Wall clock time and date at job start Sat Apr 11 2020 05:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46860 * 2 1 4 4 C 1.50702 * 109.47703 * 120.00401 * 2 1 3 5 5 H 1.07996 * 120.00325 * 114.56507 * 4 2 1 6 6 C 1.37877 * 119.99829 * 294.56345 * 4 2 1 7 7 N 1.31514 * 119.99851 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00149 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47393 * 89.99756 * 8 6 4 10 10 H 1.48497 * 109.47254 * 210.00552 * 8 6 4 11 11 H 1.48500 * 109.46775 * 329.99862 * 8 6 4 12 12 N 1.46501 * 109.47216 * 240.00643 * 2 1 3 13 13 C 1.46503 * 119.99769 * 305.53886 * 12 2 1 14 14 S 1.65599 * 120.00065 * 125.53887 * 12 2 1 15 15 O 1.42101 * 106.40113 * 200.52943 * 14 12 2 16 16 O 1.42099 * 106.40524 * 333.44835 * 14 12 2 17 17 N 1.65603 * 107.21931 * 86.99190 * 14 12 2 18 18 C 1.47071 * 136.05710 * 87.94188 * 17 14 12 19 19 C 1.53752 * 87.88692 * 152.96688 * 18 17 14 20 20 O 1.42895 * 114.08745 * 139.77923 * 19 18 17 21 21 C 1.50698 * 114.39704 * 272.67972 * 19 18 17 22 22 C 1.38234 * 119.99920 * 25.13218 * 21 19 18 23 23 C 1.38238 * 119.99877 * 179.74478 * 22 21 19 24 24 C 1.38238 * 119.99829 * 0.53271 * 23 22 21 25 25 C 1.38226 * 120.00245 * 359.73914 * 24 23 22 26 26 C 1.38232 * 120.00205 * 205.40425 * 21 19 18 27 27 C 1.47060 * 136.05639 * 268.31882 * 17 14 12 28 28 H 1.09005 * 109.46860 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47685 * 59.99584 * 1 2 3 30 30 H 1.09001 * 109.46640 * 299.98976 * 1 2 3 31 31 H 0.97002 * 119.99936 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.46787 * 89.99975 * 13 12 2 33 33 H 1.08997 * 109.46901 * 209.99877 * 13 12 2 34 34 H 1.08994 * 109.47364 * 330.00353 * 13 12 2 35 35 H 1.08996 * 113.47260 * 267.70240 * 18 17 14 36 36 H 1.09003 * 113.46534 * 38.13826 * 18 17 14 37 37 H 0.96705 * 114.00242 * 86.56245 * 20 19 18 38 38 H 1.07995 * 120.00153 * 359.97438 * 22 21 19 39 39 H 1.08003 * 120.00189 * 180.29477 * 23 22 21 40 40 H 1.08001 * 119.99666 * 179.77333 * 24 23 22 41 41 H 1.08001 * 120.00541 * 180.02562 * 25 24 23 42 42 H 1.07998 * 119.99968 * 0.02562 * 26 21 19 43 43 H 1.08995 * 113.47188 * 321.86509 * 27 17 14 44 44 H 1.09005 * 113.46679 * 92.24842 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7105 1.2304 5 1 2.5791 -1.6368 1.1337 6 6 1.7943 -0.1778 2.4796 7 7 1.1291 0.9506 2.5973 8 14 2.4165 -1.0587 4.0048 9 1 3.7821 -0.5764 4.3325 10 1 1.5060 -0.7791 5.1440 11 1 2.4559 -2.5212 3.7501 12 7 2.0183 -0.6905 -1.1962 13 6 1.5672 -2.0528 -1.4911 14 16 3.0803 0.0689 -2.2151 15 8 2.9895 -0.6040 -3.4633 16 8 2.8523 1.4635 -2.0656 17 7 4.6053 -0.2202 -1.6378 18 6 5.6223 -1.2682 -1.8115 19 6 6.6880 -0.2081 -1.4885 20 8 7.7495 -0.6824 -0.6577 21 6 7.1670 0.5768 -2.6824 22 6 6.3521 0.7161 -3.7903 23 6 6.7894 1.4406 -4.8833 24 6 8.0461 2.0165 -4.8729 25 6 8.8632 1.8725 -3.7674 26 6 8.4236 1.1528 -2.6720 27 6 5.5359 0.4548 -0.7207 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3632 0.5137 0.8901 31 1 0.9613 1.3252 3.4762 32 1 0.6669 -2.0126 -2.1043 33 1 2.3503 -2.5861 -2.0300 34 1 1.3487 -2.5730 -0.5586 35 1 5.5597 -2.0617 -1.0668 36 1 5.6825 -1.6500 -2.8308 37 1 8.4736 -1.0994 -1.1444 38 1 5.3722 0.2621 -3.8003 39 1 6.1508 1.5535 -5.7470 40 1 8.3892 2.5794 -5.7284 41 1 9.8449 2.3227 -3.7591 42 1 9.0622 1.0400 -1.8085 43 1 5.5226 1.5409 -0.8105 44 1 5.4498 0.1162 0.3118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285258353.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:52 Heat of formation + Delta-G solvation = -70.555695 kcal Electronic energy + Delta-G solvation = -29053.911168 eV Core-core repulsion = 25098.976067 eV Total energy + Delta-G solvation = -3954.935101 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.74532 -39.17168 -38.43619 -37.93988 -37.03546 -36.57920 -34.53113 -32.08503 -31.78821 -31.01292 -28.51292 -27.38588 -27.17565 -26.98329 -24.05360 -23.41315 -22.61352 -21.25885 -19.79552 -19.09714 -18.85434 -18.42577 -18.35165 -17.41478 -17.03555 -16.57641 -16.24371 -15.96761 -15.60105 -15.42045 -15.25887 -14.84756 -14.76994 -14.48508 -14.38597 -13.99065 -13.82580 -13.68622 -13.53107 -13.34988 -13.27230 -13.19055 -13.02943 -12.98066 -12.82123 -12.72633 -12.57769 -12.25289 -12.19457 -12.03904 -11.94740 -11.86405 -11.29318 -11.08504 -10.52821 -10.20875 -9.88130 -9.72390 -9.71831 -8.12074 -6.26788 -0.51034 0.29384 0.43257 1.44966 1.46324 1.55348 1.79865 2.42914 2.46740 2.69327 3.03028 3.15893 3.17902 3.26781 3.59814 3.75696 3.99980 4.09485 4.12591 4.26573 4.40830 4.47786 4.55379 4.59722 4.63071 4.67885 4.70460 4.74601 4.76442 4.90785 4.92129 5.03558 5.07825 5.09047 5.18362 5.32693 5.51918 5.55658 5.57107 5.60583 5.62825 5.81325 6.03350 6.04308 6.23149 6.78488 6.82511 7.43263 8.93946 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014360 B = 0.004330 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.370093 B = 6464.518481 C = 7527.124203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.271 3.729 3 H 0.022 0.978 4 C -0.531 4.531 5 H 0.068 0.932 6 C 0.018 3.982 7 N -0.919 5.919 8 Si 0.958 3.042 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.264 1.264 12 N -0.999 5.999 13 C 0.099 3.901 14 S 2.816 3.184 15 O -0.995 6.995 16 O -1.010 7.010 17 N -1.043 6.043 18 C 0.106 3.894 19 C 0.156 3.844 20 O -0.536 6.536 21 C -0.105 4.105 22 C -0.129 4.129 23 C -0.136 4.136 24 C -0.116 4.116 25 C -0.118 4.118 26 C -0.106 4.106 27 C 0.141 3.859 28 H 0.050 0.950 29 H 0.021 0.979 30 H 0.061 0.939 31 H 0.264 0.736 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.400 0.600 38 H 0.098 0.902 39 H 0.130 0.870 40 H 0.149 0.851 41 H 0.155 0.845 42 H 0.150 0.850 43 H 0.072 0.928 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.202 -4.087 -10.908 19.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.166 3.834 3 H 0.040 0.960 4 C -0.570 4.570 5 H 0.086 0.914 6 C -0.182 4.182 7 N -0.558 5.558 8 Si 0.784 3.216 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.188 1.188 12 N -0.840 5.840 13 C -0.046 4.046 14 S 2.827 3.173 15 O -0.979 6.979 16 O -0.995 6.995 17 N -0.884 5.884 18 C -0.019 4.019 19 C 0.112 3.888 20 O -0.344 6.344 21 C -0.105 4.105 22 C -0.147 4.147 23 C -0.154 4.154 24 C -0.133 4.133 25 C -0.136 4.136 26 C -0.123 4.123 27 C 0.016 3.984 28 H 0.069 0.931 29 H 0.040 0.960 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.109 0.891 37 H 0.251 0.749 38 H 0.116 0.884 39 H 0.148 0.852 40 H 0.167 0.833 41 H 0.173 0.827 42 H 0.168 0.832 43 H 0.090 0.910 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.300 -3.198 -11.185 19.221 hybrid contribution -0.210 -0.500 0.890 1.042 sum 15.090 -3.698 -10.295 18.638 Atomic orbital electron populations 1.21877 0.97499 1.00283 0.99604 1.18439 0.92229 0.91302 0.81394 0.96016 1.21590 1.35725 1.08894 0.90781 0.91423 1.25696 0.95156 0.95479 1.01855 1.70050 1.40956 1.20158 1.24623 0.85555 0.78018 0.79238 0.78810 1.20248 1.21309 1.18838 1.57787 1.59649 1.26420 1.40186 1.21399 0.99843 0.81607 1.01758 1.00644 0.71379 0.72436 0.72822 1.93519 1.86571 1.76595 1.41218 1.93531 1.84928 1.33600 1.87433 1.60259 1.30473 1.36948 1.60755 1.23491 0.83163 0.91747 1.03490 1.21126 0.85784 0.93364 0.88559 1.86548 1.32827 1.79276 1.35729 1.19763 0.95891 1.00933 0.93925 1.21135 0.99252 0.99951 0.94389 1.21425 0.97607 0.97952 0.98399 1.21551 0.93388 0.98785 0.99623 1.21540 1.01007 0.98247 0.92775 1.21258 0.94683 0.96742 0.99666 1.22549 0.83486 0.97871 0.94528 0.93130 0.95973 0.91989 0.92690 0.92680 0.90845 0.90344 0.87589 0.89058 0.74889 0.88427 0.85200 0.83285 0.82705 0.83229 0.90953 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.41 8.94 71.98 0.64 -5.76 16 2 C 0.27 13.63 2.54 44.24 0.11 13.75 16 3 H 0.02 1.27 6.92 -2.38 -0.02 1.26 16 4 C -0.53 -27.31 8.08 25.60 0.21 -27.10 16 5 H 0.07 3.34 7.53 -2.91 -0.02 3.32 16 6 C 0.02 0.96 5.32 84.65 0.45 1.41 16 7 N -0.92 -51.73 11.73 21.45 0.25 -51.48 16 8 Si 0.96 41.62 29.54 68.60 2.03 43.64 16 9 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 12 N -1.00 -42.69 3.12 -520.44 -1.62 -44.32 16 13 C 0.10 3.48 9.11 127.77 1.16 4.64 16 14 S 2.82 117.57 6.15 -56.49 -0.35 117.22 16 15 O -0.99 -41.07 16.57 -128.00 -2.12 -43.19 16 16 O -1.01 -50.07 16.74 -128.00 -2.14 -52.21 16 17 N -1.04 -36.09 3.03 -549.91 -1.67 -37.76 16 18 C 0.11 2.78 7.58 83.26 0.63 3.41 16 19 C 0.16 3.84 2.00 -11.12 -0.02 3.82 16 20 O -0.54 -10.59 12.73 -148.98 -1.90 -12.49 16 21 C -0.10 -2.51 5.26 -19.87 -0.10 -2.62 16 22 C -0.13 -3.56 8.76 22.27 0.20 -3.37 16 23 C -0.14 -3.17 10.05 22.27 0.22 -2.95 16 24 C -0.12 -2.06 10.05 22.27 0.22 -1.84 16 25 C -0.12 -1.89 10.05 22.27 0.22 -1.67 16 26 C -0.11 -1.95 9.26 22.27 0.21 -1.75 16 27 C 0.14 4.61 8.13 83.18 0.68 5.29 16 28 H 0.05 2.21 7.53 -2.38 -0.02 2.20 16 29 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 3.26 6.52 -2.39 -0.02 3.25 16 31 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 32 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 2.21 7.71 -2.39 -0.02 2.19 16 34 H 0.08 2.74 7.32 -2.39 -0.02 2.72 16 35 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.09 2.16 7.43 -2.39 -0.02 2.14 16 37 H 0.40 4.17 8.69 -74.05 -0.64 3.52 16 38 H 0.10 3.11 5.13 -2.91 -0.01 3.10 16 39 H 0.13 2.72 8.06 -2.91 -0.02 2.70 16 40 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 41 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 42 H 0.15 2.09 7.40 -2.91 -0.02 2.07 16 43 H 0.07 2.48 8.11 -2.39 -0.02 2.46 16 44 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 Total: -1.00 -70.22 371.38 -2.31 -72.53 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.38 Total: 22.79 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 4.83 Total: -14.74 kcal Atomic # 7 Polarization: -130.52 SS G_CDS: -3.04 Total: -133.56 kcal Atomic # 8 Polarization: -101.73 SS G_CDS: -6.16 Total: -107.89 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 16 Polarization: 117.57 SS G_CDS: -0.35 Total: 117.22 kcal Total: -70.22 -2.31 -72.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285258353.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.970 kcal (2) G-P(sol) polarization free energy of solvation -70.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds