Wall clock time and date at job start Sat Apr 11 2020 05:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47139 * 2 1 4 4 C 1.50696 * 109.46976 * 240.00150 * 2 1 3 5 5 H 1.07998 * 120.00373 * 239.99659 * 4 2 1 6 6 C 1.37883 * 120.00077 * 59.99991 * 4 2 1 7 7 N 1.31519 * 119.99611 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00333 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47004 * 59.99936 * 8 6 4 10 10 H 1.48497 * 109.47127 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47018 * 300.00265 * 8 6 4 12 12 N 1.46496 * 109.47390 * 120.00295 * 2 1 3 13 13 C 1.46497 * 120.00090 * 59.99689 * 12 2 1 14 14 S 1.65598 * 120.00110 * 239.99921 * 12 2 1 15 15 O 1.42101 * 106.40248 * 336.45844 * 14 12 2 16 16 O 1.42101 * 106.40302 * 203.53630 * 14 12 2 17 17 N 1.65605 * 107.21880 * 90.00135 * 14 12 2 18 18 C 1.46493 * 120.00343 * 64.99689 * 17 14 12 19 19 C 1.52999 * 109.47526 * 165.00482 * 18 17 14 20 20 H 1.08999 * 110.83266 * 51.28538 * 19 18 17 21 21 C 1.54712 * 110.96609 * 287.55277 * 19 18 17 22 22 O 1.43773 * 102.78786 * 216.51760 * 21 19 18 23 23 C 1.36132 * 109.24969 * 27.69059 * 22 21 19 24 24 C 1.39286 * 129.88399 * 161.38810 * 23 22 21 25 25 C 1.37936 * 120.24308 * 179.35033 * 24 23 22 26 26 C 1.38285 * 120.34853 * 0.04731 * 25 24 23 27 27 C 1.38344 * 119.76699 * 0.17199 * 26 25 24 28 28 C 1.37737 * 119.97985 * 359.91066 * 27 26 25 29 29 H 1.09003 * 109.46646 * 299.99466 * 1 2 3 30 30 H 1.08993 * 109.47231 * 59.99369 * 1 2 3 31 31 H 1.08997 * 109.46885 * 179.97438 * 1 2 3 32 32 H 0.96995 * 119.99656 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.47535 * 270.00278 * 13 12 2 34 34 H 1.09007 * 109.46760 * 30.00017 * 13 12 2 35 35 H 1.09004 * 109.47239 * 150.00062 * 13 12 2 36 36 H 0.97004 * 119.99897 * 245.00712 * 17 14 12 37 37 H 1.09001 * 109.47304 * 45.00341 * 18 17 14 38 38 H 1.09003 * 109.47209 * 285.00754 * 18 17 14 39 39 H 1.08995 * 110.75158 * 334.84917 * 21 19 18 40 40 H 1.09009 * 110.74566 * 98.19843 * 21 19 18 41 41 H 1.08008 * 119.88161 * 359.38050 * 24 23 22 42 42 H 1.07999 * 119.82075 * 180.32198 * 25 24 23 43 43 H 1.08002 * 120.11109 * 180.14944 * 26 25 24 44 44 H 1.07998 * 120.01157 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3224 -1.1193 -4.0081 9 1 1.8279 -2.5196 -4.0083 10 1 1.8277 -0.4189 -5.2205 11 1 3.8074 -1.1188 -4.0079 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 16 2.9705 0.1141 2.2861 15 8 3.5795 1.1829 1.5748 16 8 3.7119 -0.8790 2.9813 17 7 1.9608 0.8089 3.3998 18 6 1.1511 -0.0354 4.2817 19 6 0.6088 0.8073 5.4378 20 1 0.1184 1.7066 5.0653 21 6 1.7340 1.1649 6.4376 22 8 1.0617 1.1075 7.7072 23 6 0.0231 0.2312 7.6259 24 6 -0.6838 -0.4123 8.6388 25 6 -1.7245 -1.2625 8.3277 26 6 -2.0748 -1.4846 7.0085 27 6 -1.3746 -0.8528 5.9963 28 6 -0.3340 -0.0047 6.3047 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7086 1.1614 -3.4843 33 1 0.7376 -2.1445 1.9993 34 1 1.5295 -2.5968 0.4706 35 1 2.4630 -2.5819 1.9862 36 1 1.9055 1.7749 3.4682 37 1 1.7670 -0.8426 4.6782 38 1 0.3189 -0.4568 3.7177 39 1 2.5381 0.4305 6.3929 40 1 2.1150 2.1683 6.2474 41 1 -0.4166 -0.2447 9.6718 42 1 -2.2714 -1.7539 9.1187 43 1 -2.8918 -2.1492 6.7693 44 1 -1.6445 -1.0236 4.9646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288364977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:04 Heat of formation + Delta-G solvation = -77.825303 kcal Electronic energy + Delta-G solvation = -28127.943282 eV Core-core repulsion = 24172.692947 eV Total energy + Delta-G solvation = -3955.250335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.43171 -37.63420 -36.76695 -36.23466 -35.91119 -35.28458 -32.61000 -32.35459 -30.27719 -29.39916 -29.13803 -25.76993 -25.50161 -25.19539 -23.42536 -22.31757 -21.14815 -20.77145 -18.90667 -17.72127 -17.33655 -17.00287 -16.73119 -16.60752 -16.16128 -15.75448 -15.50542 -14.94617 -14.72766 -14.30635 -14.01897 -13.64835 -13.48669 -13.43383 -13.18829 -12.89699 -12.72226 -12.42429 -12.16796 -12.03555 -11.86693 -11.71879 -11.53368 -11.39913 -11.36420 -11.25458 -11.11129 -10.93934 -10.93623 -10.85777 -10.50951 -10.25517 -10.09090 -9.42507 -9.30524 -9.14855 -8.47848 -8.38512 -8.02471 -6.10177 -4.16936 1.01883 1.14821 1.16658 3.03807 3.28371 3.33040 3.35244 3.40210 3.48940 3.98083 4.20340 4.27216 4.37845 4.47246 4.70561 4.82640 4.85899 4.97542 5.15012 5.20971 5.21673 5.22590 5.26543 5.34499 5.55353 5.60336 5.68169 5.79544 5.92607 6.05613 6.08310 6.18810 6.25015 6.31330 6.35833 6.62722 6.73769 6.80137 6.94794 6.98908 7.05945 7.44034 7.59314 7.75954 8.01648 8.24301 8.84813 9.48866 10.95522 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019558 B = 0.003002 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.260991 B = 9323.778320 C =10009.257805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.269 3.731 3 H 0.059 0.941 4 C -0.522 4.522 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.988 5.988 13 C 0.095 3.905 14 S 2.779 3.221 15 O -0.972 6.972 16 O -0.996 6.996 17 N -1.136 6.136 18 C 0.135 3.865 19 C -0.082 4.082 20 H 0.106 0.894 21 C 0.054 3.946 22 O -0.305 6.305 23 C 0.108 3.892 24 C -0.142 4.142 25 C -0.085 4.085 26 C -0.149 4.149 27 C -0.065 4.065 28 C -0.166 4.166 29 H 0.010 0.990 30 H 0.092 0.908 31 H 0.032 0.968 32 H 0.264 0.736 33 H 0.036 0.964 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.412 0.588 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.300 -2.237 19.443 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.562 4.562 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.831 5.831 13 C -0.052 4.052 14 S 2.788 3.212 15 O -0.956 6.956 16 O -0.979 6.979 17 N -0.894 5.894 18 C 0.008 3.992 19 C -0.102 4.102 20 H 0.124 0.876 21 C -0.021 4.021 22 O -0.219 6.219 23 C 0.063 3.937 24 C -0.161 4.161 25 C -0.103 4.103 26 C -0.167 4.167 27 C -0.083 4.083 28 C -0.168 4.168 29 H 0.029 0.971 30 H 0.110 0.890 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.245 0.755 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.128 0.872 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.308 -2.133 19.464 20.287 hybrid contribution -0.247 -0.021 -1.065 1.094 sum -5.555 -2.154 18.399 19.339 Atomic orbital electron populations 1.22107 0.98217 0.99724 1.00531 1.18724 0.91285 0.92996 0.80417 0.92380 1.21298 1.31724 1.13097 0.90076 0.91941 1.24907 0.94914 0.95001 0.99005 1.69848 1.36417 1.22666 1.23934 0.86551 0.79372 0.79567 0.81881 1.20218 1.21202 1.20143 1.57642 1.69884 1.19837 1.35709 1.21336 0.98657 0.82418 1.02767 1.01953 0.73622 0.73201 0.72453 1.93623 1.74293 1.55962 1.71748 1.93529 1.69193 1.60701 1.74524 1.56284 1.62577 1.17324 1.53233 1.21128 0.95293 0.92731 0.90024 1.21610 0.94436 0.98984 0.95176 0.87561 1.24029 0.94603 1.04096 0.79352 1.86831 1.41865 1.57678 1.35515 1.19597 0.89463 0.90559 0.94073 1.20260 0.98423 0.99299 0.98071 1.20888 0.95768 0.96802 0.96862 1.21061 1.01197 1.01974 0.92488 1.20412 0.93334 0.94421 1.00094 1.20628 1.00107 1.02259 0.93778 0.97137 0.88956 0.94845 0.92613 0.94544 0.89744 0.91885 0.75506 0.90078 0.90925 0.89715 0.87241 0.85532 0.85217 0.85360 0.85358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 8.97 37.16 0.33 -2.88 16 2 C 0.27 6.39 2.62 -69.09 -0.18 6.21 16 3 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 4 C -0.52 -13.80 7.99 -34.44 -0.28 -14.08 16 5 H 0.06 1.64 7.33 -52.49 -0.38 1.25 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.44 11.32 55.43 0.63 -23.82 16 8 Si 0.90 20.87 29.54 -169.99 -5.02 15.84 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.99 -19.65 3.12 -115.85 -0.36 -20.01 16 13 C 0.09 1.61 9.65 59.85 0.58 2.19 16 14 S 2.78 51.80 6.14 -107.50 -0.66 51.14 16 15 O -0.97 -21.89 16.70 -57.17 -0.95 -22.85 16 16 O -1.00 -19.74 16.21 -57.17 -0.93 -20.66 16 17 N -1.14 -15.28 5.99 -10.62 -0.06 -15.34 16 18 C 0.14 1.56 5.62 -4.05 -0.02 1.54 16 19 C -0.08 -0.84 3.16 -90.41 -0.29 -1.12 16 20 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 21 C 0.05 0.54 7.49 38.06 0.29 0.83 16 22 O -0.30 -3.59 11.10 -20.16 -0.22 -3.82 16 23 C 0.11 1.23 7.04 -38.95 -0.27 0.96 16 24 C -0.14 -1.36 10.06 -39.30 -0.40 -1.76 16 25 C -0.09 -0.69 10.02 -39.67 -0.40 -1.09 16 26 C -0.15 -1.25 10.07 -39.53 -0.40 -1.65 16 27 C -0.06 -0.62 9.86 -39.73 -0.39 -1.01 16 28 C -0.17 -1.79 5.69 -104.10 -0.59 -2.38 16 29 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 31 H 0.03 0.69 7.67 -51.93 -0.40 0.29 16 32 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 1.52 7.02 -51.93 -0.36 1.16 16 35 H 0.06 1.01 7.02 -51.93 -0.36 0.65 16 36 H 0.41 4.71 8.65 -34.48 -0.30 4.41 16 37 H 0.08 0.97 7.55 -51.93 -0.39 0.58 16 38 H 0.07 0.81 8.05 -51.93 -0.42 0.39 16 39 H 0.08 0.85 7.78 -51.93 -0.40 0.45 16 40 H 0.11 0.88 8.14 -51.92 -0.42 0.46 16 41 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 42 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.13 1.08 8.04 -52.49 -0.42 0.66 16 LS Contribution 372.15 15.07 5.61 5.61 Total: -1.00 -32.68 372.15 -10.30 -42.98 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.22 Total: 3.57 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -2.11 Total: -12.63 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: 0.20 Total: -59.18 kcal Atomic # 8 Polarization: -45.23 SS G_CDS: -2.11 Total: -47.33 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 51.80 SS G_CDS: -0.66 Total: 51.14 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.68 -10.30 -42.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288364977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.846 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds