Wall clock time and date at job start Sat Apr 11 2020 05:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47139 * 2 1 4 4 C 1.50696 * 109.46976 * 240.00150 * 2 1 3 5 5 H 1.07998 * 120.00373 * 239.99659 * 4 2 1 6 6 C 1.37883 * 120.00077 * 59.99991 * 4 2 1 7 7 N 1.31519 * 119.99611 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00333 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47004 * 59.99936 * 8 6 4 10 10 H 1.48497 * 109.47127 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47018 * 300.00265 * 8 6 4 12 12 N 1.46496 * 109.47390 * 120.00295 * 2 1 3 13 13 C 1.46497 * 120.00090 * 59.99689 * 12 2 1 14 14 S 1.65598 * 120.00110 * 239.99921 * 12 2 1 15 15 O 1.42101 * 106.40248 * 336.45844 * 14 12 2 16 16 O 1.42101 * 106.40302 * 203.53630 * 14 12 2 17 17 N 1.65605 * 107.21880 * 90.00135 * 14 12 2 18 18 C 1.46493 * 120.00343 * 64.99689 * 17 14 12 19 19 C 1.52999 * 109.47526 * 165.00482 * 18 17 14 20 20 H 1.08999 * 110.83266 * 51.28538 * 19 18 17 21 21 C 1.54712 * 110.96609 * 287.55277 * 19 18 17 22 22 O 1.43773 * 102.78786 * 216.51760 * 21 19 18 23 23 C 1.36132 * 109.24969 * 27.69059 * 22 21 19 24 24 C 1.39286 * 129.88399 * 161.38810 * 23 22 21 25 25 C 1.37936 * 120.24308 * 179.35033 * 24 23 22 26 26 C 1.38285 * 120.34853 * 0.04731 * 25 24 23 27 27 C 1.38344 * 119.76699 * 0.17199 * 26 25 24 28 28 C 1.37737 * 119.97985 * 359.91066 * 27 26 25 29 29 H 1.09003 * 109.46646 * 299.99466 * 1 2 3 30 30 H 1.08993 * 109.47231 * 59.99369 * 1 2 3 31 31 H 1.08997 * 109.46885 * 179.97438 * 1 2 3 32 32 H 0.96995 * 119.99656 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.47535 * 270.00278 * 13 12 2 34 34 H 1.09007 * 109.46760 * 30.00017 * 13 12 2 35 35 H 1.09004 * 109.47239 * 150.00062 * 13 12 2 36 36 H 0.97004 * 119.99897 * 245.00712 * 17 14 12 37 37 H 1.09001 * 109.47304 * 45.00341 * 18 17 14 38 38 H 1.09003 * 109.47209 * 285.00754 * 18 17 14 39 39 H 1.08995 * 110.75158 * 334.84917 * 21 19 18 40 40 H 1.09009 * 110.74566 * 98.19843 * 21 19 18 41 41 H 1.08008 * 119.88161 * 359.38050 * 24 23 22 42 42 H 1.07999 * 119.82075 * 180.32198 * 25 24 23 43 43 H 1.08002 * 120.11109 * 180.14944 * 26 25 24 44 44 H 1.07998 * 120.01157 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3224 -1.1193 -4.0081 9 1 1.8279 -2.5196 -4.0083 10 1 1.8277 -0.4189 -5.2205 11 1 3.8074 -1.1188 -4.0079 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 16 2.9705 0.1141 2.2861 15 8 3.5795 1.1829 1.5748 16 8 3.7119 -0.8790 2.9813 17 7 1.9608 0.8089 3.3998 18 6 1.1511 -0.0354 4.2817 19 6 0.6088 0.8073 5.4378 20 1 0.1184 1.7066 5.0653 21 6 1.7340 1.1649 6.4376 22 8 1.0617 1.1075 7.7072 23 6 0.0231 0.2312 7.6259 24 6 -0.6838 -0.4123 8.6388 25 6 -1.7245 -1.2625 8.3277 26 6 -2.0748 -1.4846 7.0085 27 6 -1.3746 -0.8528 5.9963 28 6 -0.3340 -0.0047 6.3047 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7086 1.1614 -3.4843 33 1 0.7376 -2.1445 1.9993 34 1 1.5295 -2.5968 0.4706 35 1 2.4630 -2.5819 1.9862 36 1 1.9055 1.7749 3.4682 37 1 1.7670 -0.8426 4.6782 38 1 0.3189 -0.4568 3.7177 39 1 2.5381 0.4305 6.3929 40 1 2.1150 2.1683 6.2474 41 1 -0.4166 -0.2447 9.6718 42 1 -2.2714 -1.7539 9.1187 43 1 -2.8918 -2.1492 6.7693 44 1 -1.6445 -1.0236 4.9646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288364977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:04 Heat of formation + Delta-G solvation = -100.574016 kcal Electronic energy + Delta-G solvation = -28128.929740 eV Core-core repulsion = 24172.692947 eV Total energy + Delta-G solvation = -3956.236793 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.18333 -38.37715 -38.30405 -37.89026 -36.97516 -36.89242 -34.51434 -33.24070 -30.97783 -30.90638 -30.15065 -27.22515 -27.01981 -26.60647 -24.14659 -23.03314 -22.63407 -21.86325 -20.30809 -18.92739 -18.59464 -18.33022 -18.20534 -17.54380 -17.36711 -17.01066 -16.46102 -16.42911 -15.75920 -15.57299 -15.13647 -14.86689 -14.77963 -14.37090 -14.34220 -14.17795 -13.78222 -13.63459 -13.47779 -13.40731 -13.18102 -13.11349 -13.02458 -12.97877 -12.71258 -12.61953 -12.49695 -12.40111 -12.22341 -12.11333 -11.89992 -11.83338 -11.66572 -11.16559 -10.54844 -10.47730 -9.84158 -9.65580 -9.11549 -8.11331 -6.24547 -0.33651 0.34953 0.44412 1.43417 1.45533 1.52193 2.01570 2.31104 2.43590 2.61132 2.78717 3.17294 3.32036 3.44761 3.52638 3.71324 3.97918 4.07981 4.16731 4.26161 4.36895 4.43681 4.51626 4.56682 4.58604 4.69210 4.75611 4.77254 4.82156 4.96634 5.03371 5.07539 5.12065 5.18254 5.28199 5.41633 5.49184 5.59458 5.62198 5.69318 5.70051 5.88433 6.04451 6.19699 6.23492 6.31484 6.83022 7.44276 8.92592 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019558 B = 0.003002 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.260991 B = 9323.778320 C =10009.257805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.274 3.726 3 H 0.025 0.975 4 C -0.541 4.541 5 H 0.057 0.943 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.953 3.047 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.280 1.280 12 N -0.996 5.996 13 C 0.090 3.910 14 S 2.797 3.203 15 O -1.016 7.016 16 O -1.009 7.009 17 N -1.119 6.119 18 C 0.133 3.867 19 C -0.075 4.075 20 H 0.116 0.884 21 C 0.048 3.952 22 O -0.321 6.321 23 C 0.080 3.920 24 C -0.152 4.152 25 C -0.083 4.083 26 C -0.149 4.149 27 C -0.076 4.076 28 C -0.179 4.179 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.264 0.736 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.424 0.576 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.127 0.873 41 H 0.137 0.863 42 H 0.159 0.841 43 H 0.152 0.848 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.715 -3.427 20.561 22.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.170 3.830 3 H 0.043 0.957 4 C -0.580 4.580 5 H 0.076 0.924 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.779 3.221 9 H -0.191 1.191 10 H -0.208 1.208 11 H -0.206 1.206 12 N -0.838 5.838 13 C -0.056 4.056 14 S 2.806 3.194 15 O -1.000 7.000 16 O -0.992 6.992 17 N -0.882 5.882 18 C 0.007 3.993 19 C -0.094 4.094 20 H 0.133 0.867 21 C -0.026 4.026 22 O -0.236 6.236 23 C 0.035 3.965 24 C -0.171 4.171 25 C -0.101 4.101 26 C -0.167 4.167 27 C -0.094 4.094 28 C -0.181 4.181 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.259 0.741 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.144 0.856 41 H 0.155 0.845 42 H 0.176 0.824 43 H 0.170 0.830 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.723 -3.340 20.590 21.916 hybrid contribution 0.163 0.316 -1.278 1.327 sum -6.561 -3.024 19.312 20.619 Atomic orbital electron populations 1.21895 0.96696 1.00232 1.00460 1.18384 0.92300 0.91310 0.81044 0.95716 1.21653 1.31676 1.13130 0.91548 0.92445 1.25616 0.95211 0.95709 1.01604 1.69965 1.37233 1.23656 1.24398 0.85686 0.78423 0.79104 0.78872 1.19051 1.20778 1.20578 1.57513 1.69936 1.21089 1.35213 1.21518 1.00623 0.80709 1.02740 1.01169 0.73548 0.72331 0.72343 1.93562 1.75823 1.57396 1.73218 1.93509 1.69893 1.61225 1.74557 1.55779 1.62181 1.18145 1.52061 1.21299 0.95178 0.92625 0.90204 1.21531 0.94445 0.99024 0.94436 0.86662 1.24162 0.94434 1.05010 0.79001 1.86799 1.42344 1.58176 1.36259 1.19930 0.90059 0.91505 0.94990 1.20587 0.98689 0.99370 0.98436 1.21268 0.95111 0.95977 0.97746 1.21428 1.01316 1.01605 0.92341 1.20678 0.93228 0.94379 1.01133 1.20743 1.00762 1.03000 0.93600 0.94443 0.91717 0.93911 0.92649 0.91148 0.91017 0.91053 0.74071 0.90324 0.89825 0.90200 0.85554 0.84518 0.82374 0.82984 0.84289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.73 8.97 71.98 0.65 -5.09 16 2 C 0.27 13.05 2.62 44.25 0.12 13.17 16 3 H 0.03 1.35 6.91 -2.38 -0.02 1.34 16 4 C -0.54 -28.74 7.99 25.60 0.20 -28.54 16 5 H 0.06 3.03 7.33 -2.91 -0.02 3.00 16 6 C 0.02 1.00 5.30 84.66 0.45 1.45 16 7 N -0.91 -50.67 11.32 21.45 0.24 -50.43 16 8 Si 0.95 42.76 29.54 68.60 2.03 44.78 16 9 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 N -1.00 -38.90 3.12 -520.44 -1.62 -40.52 16 13 C 0.09 2.90 9.65 127.77 1.23 4.13 16 14 S 2.80 103.10 6.14 -56.49 -0.35 102.76 16 15 O -1.02 -46.51 16.70 -128.00 -2.14 -48.64 16 16 O -1.01 -39.21 16.21 -128.00 -2.07 -41.29 16 17 N -1.12 -28.67 5.99 -187.50 -1.12 -29.80 16 18 C 0.13 2.83 5.62 86.38 0.49 3.31 16 19 C -0.07 -1.41 3.16 -10.65 -0.03 -1.44 16 20 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 21 C 0.05 0.93 7.49 72.57 0.54 1.47 16 22 O -0.32 -7.41 11.10 -95.05 -1.06 -8.47 16 23 C 0.08 1.74 7.04 22.68 0.16 1.90 16 24 C -0.15 -2.69 10.06 22.45 0.23 -2.46 16 25 C -0.08 -1.13 10.02 22.21 0.22 -0.91 16 26 C -0.15 -2.08 10.07 22.31 0.22 -1.86 16 27 C -0.08 -1.30 9.86 22.18 0.22 -1.08 16 28 C -0.18 -3.59 5.69 -19.53 -0.11 -3.70 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 31 H 0.04 1.71 7.67 -2.39 -0.02 1.69 16 32 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 2.50 7.02 -2.38 -0.02 2.49 16 35 H 0.07 2.18 7.02 -2.38 -0.02 2.16 16 36 H 0.42 9.15 8.65 -96.74 -0.84 8.32 16 37 H 0.08 1.75 7.55 -2.39 -0.02 1.73 16 38 H 0.08 1.63 8.05 -2.39 -0.02 1.61 16 39 H 0.08 1.57 7.78 -2.39 -0.02 1.55 16 40 H 0.13 1.89 8.14 -2.38 -0.02 1.87 16 41 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 42 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 43 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 44 H 0.14 1.97 8.04 -2.91 -0.02 1.95 16 Total: -1.00 -70.64 372.15 -1.33 -71.97 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.18 Total: 19.28 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 4.58 Total: -19.64 kcal Atomic # 7 Polarization: -118.24 SS G_CDS: -2.50 Total: -120.74 kcal Atomic # 8 Polarization: -93.13 SS G_CDS: -5.27 Total: -98.40 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 103.10 SS G_CDS: -0.35 Total: 102.76 kcal Total: -70.64 -1.33 -71.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288364977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.609 kcal (2) G-P(sol) polarization free energy of solvation -70.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds