Wall clock time and date at job start Sat Apr 11 2020 05:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46959 * 2 1 4 4 C 1.46503 * 120.00165 * 270.00308 * 3 2 1 5 5 C 1.50704 * 109.47095 * 270.00101 * 4 3 2 6 6 H 1.08002 * 119.99887 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99726 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00315 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99698 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47217 * 89.99798 * 9 7 5 11 11 H 1.48506 * 109.47003 * 209.99680 * 9 7 5 12 12 H 1.48503 * 109.47101 * 329.99410 * 9 7 5 13 13 C 1.34776 * 120.00028 * 90.00223 * 3 2 1 14 14 O 1.21281 * 120.00203 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00024 * 359.97438 * 13 3 2 16 16 N 1.46894 * 109.47123 * 179.97438 * 15 13 3 17 17 C 1.46909 * 110.99859 * 190.00056 * 16 15 13 18 18 C 1.50699 * 109.46961 * 174.99995 * 17 16 15 19 19 C 1.38237 * 120.00455 * 104.99910 * 18 17 16 20 20 C 1.38224 * 120.01313 * 179.74163 * 19 18 17 21 21 C 1.38264 * 120.02445 * 0.26351 * 20 19 18 22 22 C 1.38190 * 120.01695 * 0.02562 * 21 20 19 23 23 C 1.38328 * 120.01174 * 285.27645 * 18 17 16 24 24 Cl 1.73603 * 120.01189 * 0.02562 * 23 18 17 25 25 O 1.46298 * 110.99966 * 66.05099 * 16 15 13 26 26 C 1.42899 * 114.00126 * 243.94934 * 25 16 15 27 27 H 1.08998 * 109.46950 * 299.99620 * 1 2 3 28 28 H 1.09000 * 109.47088 * 59.99989 * 1 2 3 29 29 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47465 * 240.00470 * 2 1 3 31 31 H 1.09002 * 109.47572 * 119.99864 * 2 1 3 32 32 H 1.08998 * 109.46973 * 29.99866 * 4 3 2 33 33 H 1.09000 * 109.47527 * 150.00065 * 4 3 2 34 34 H 0.97008 * 119.99960 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.46842 * 59.99947 * 15 13 3 36 36 H 1.09003 * 109.47506 * 300.00468 * 15 13 3 37 37 H 1.08993 * 109.47031 * 55.00488 * 17 16 15 38 38 H 1.08991 * 109.47270 * 294.99980 * 17 16 15 39 39 H 1.08002 * 119.99593 * 0.02780 * 19 18 17 40 40 H 1.07996 * 119.98813 * 180.23496 * 20 19 18 41 41 H 1.08004 * 119.98845 * 179.97438 * 21 20 19 42 42 H 1.08000 * 120.00844 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.47532 * 179.97438 * 26 25 16 44 44 H 1.09004 * 109.47208 * 300.00520 * 26 25 16 45 45 H 1.09002 * 109.46669 * 59.99700 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8352 -1.7039 6 1 4.3428 1.2310 -1.0959 7 6 4.1492 2.3907 -2.8775 8 7 3.3491 3.1268 -3.6175 9 14 5.9136 2.0978 -3.4165 10 1 5.9775 0.8771 -4.2597 11 1 6.3925 3.2656 -4.1990 12 1 6.7736 1.9180 -2.2192 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9913 1.3064 2.4723 16 7 2.3102 2.2061 3.5888 17 6 2.3061 1.4813 4.8666 18 6 2.7557 2.4048 5.9693 19 6 1.8319 2.9200 6.8593 20 6 2.2449 3.7629 7.8740 21 6 3.5814 4.0954 7.9962 22 6 4.5050 3.5858 7.1036 23 6 4.0921 2.7417 6.0878 24 17 5.2518 2.1014 4.9658 25 8 1.3882 3.3414 3.6270 26 6 2.0148 4.6066 3.4067 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5816 1.6878 -2.0283 33 1 2.0954 3.1412 -1.1384 34 1 3.6752 3.5173 -4.4435 35 1 2.6212 0.4186 2.5301 36 1 0.9432 1.0125 2.5299 37 1 2.9859 0.6316 4.8046 38 1 1.2981 1.1254 5.0792 39 1 0.7879 2.6603 6.7646 40 1 1.5234 4.1621 8.5714 41 1 3.9034 4.7544 8.7891 42 1 5.5490 3.8453 7.1994 43 1 1.2645 5.3962 3.4502 44 1 2.7681 4.7779 4.1757 45 1 2.4897 4.6109 2.4256 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289763378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:12 Heat of formation + Delta-G solvation = -2.122235 kcal Electronic energy + Delta-G solvation = -28039.423554 eV Core-core repulsion = 24085.412244 eV Total energy + Delta-G solvation = -3954.011310 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.66562 -38.99544 -36.75124 -36.34806 -35.12196 -33.97719 -32.78994 -31.62669 -30.83627 -30.06192 -28.13662 -26.45443 -25.89517 -23.82872 -22.97899 -22.84299 -22.05259 -21.25793 -18.39681 -17.37579 -16.75358 -16.54629 -16.29450 -15.91542 -15.41694 -15.30641 -14.99065 -14.69186 -14.34223 -13.99443 -13.96028 -13.60570 -13.36910 -13.30076 -13.05181 -12.86840 -12.62314 -12.47472 -11.99046 -11.84944 -11.68466 -11.56619 -11.48935 -11.41131 -11.17984 -11.14739 -10.88085 -10.70522 -10.67190 -10.49094 -10.09048 -9.62717 -9.49563 -9.10567 -8.78896 -8.74274 -8.41291 -8.39880 -7.58672 -6.00566 -4.04803 0.99193 1.08651 2.19994 2.77066 3.32300 3.39121 3.43465 3.47937 3.54508 3.93152 4.42694 4.48759 4.59203 4.76204 4.95916 5.04362 5.15194 5.19638 5.25668 5.33375 5.35170 5.42430 5.47600 5.54917 5.65632 5.69338 5.72065 5.81025 6.01526 6.03313 6.05049 6.08923 6.18844 6.24846 6.26080 6.49517 6.58628 6.61875 6.67258 7.14667 7.27935 7.50305 7.64331 7.96916 8.28356 8.49391 8.96298 9.23367 9.60464 11.07396 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014031 B = 0.003301 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.127374 B = 8480.827317 C = 9393.692832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.250 3.750 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.514 3.486 14 O -0.519 6.519 15 C 0.023 3.977 16 N -0.339 5.339 17 C 0.081 3.919 18 C -0.067 4.067 19 C -0.090 4.090 20 C -0.122 4.122 21 C -0.109 4.109 22 C -0.118 4.118 23 C -0.013 4.013 24 Cl -0.053 7.053 25 O -0.252 6.252 26 C 0.035 3.965 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.030 0.970 33 H 0.042 0.958 34 H 0.262 0.738 35 H 0.109 0.891 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.056 0.944 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.073 0.927 44 H 0.029 0.971 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.092 -4.391 22.614 23.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.333 5.333 4 C 0.131 3.869 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.299 3.701 14 O -0.394 6.394 15 C -0.108 4.108 16 N -0.107 5.107 17 C -0.047 4.047 18 C -0.068 4.068 19 C -0.109 4.109 20 C -0.140 4.140 21 C -0.127 4.127 22 C -0.136 4.136 23 C -0.040 4.040 24 Cl -0.024 7.024 25 O -0.258 6.258 26 C -0.062 4.062 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.127 0.873 36 H 0.087 0.913 37 H 0.120 0.880 38 H 0.074 0.926 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.146 0.854 42 H 0.149 0.851 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.522 -3.540 22.255 22.808 hybrid contribution 0.399 -0.518 -0.404 0.769 sum -3.124 -4.058 21.850 22.442 Atomic orbital electron populations 1.22227 0.96913 1.01292 1.02325 1.21396 0.93419 0.84415 1.02502 1.48228 1.64312 1.13167 1.07615 1.19220 0.96106 0.93584 0.78014 1.21445 0.96956 1.31679 1.06116 0.92503 1.24922 0.97739 0.94970 0.96462 1.69934 1.35654 1.33563 1.14335 0.86527 0.84883 0.77615 0.78580 1.20715 1.21135 1.19888 1.19885 0.78774 0.87040 0.84378 1.90514 1.44739 1.17637 1.86551 1.22415 1.01644 0.95587 0.91134 1.67371 1.38463 1.03747 1.01088 1.21333 1.00990 0.94716 0.87651 1.19486 0.91510 0.99169 0.96633 1.21019 0.99106 0.96614 0.94142 1.21180 0.96054 0.98335 0.98456 1.21094 0.93060 0.99650 0.98918 1.21063 1.00641 0.97455 0.94475 1.20858 0.90554 0.99158 0.93468 1.98407 1.58110 1.85072 1.60793 1.90544 1.27524 1.13183 1.94555 1.22841 0.97930 0.82382 1.03008 0.93173 0.92020 0.92259 0.89939 0.92040 0.95200 0.93959 0.92799 0.87321 0.91311 0.87967 0.92585 0.85403 0.85617 0.85382 0.85069 0.90896 0.95213 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.89 16 2 C 0.11 1.69 5.93 -4.04 -0.02 1.67 16 3 N -0.60 -12.62 2.46 -175.06 -0.43 -13.05 16 4 C 0.25 6.53 5.16 -5.19 -0.03 6.51 16 5 C -0.52 -14.88 9.39 -34.44 -0.32 -15.20 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 9 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.51 10.72 7.58 -10.99 -0.08 10.63 16 14 O -0.52 -12.85 12.41 -8.08 -0.10 -12.95 16 15 C 0.02 0.36 4.31 -4.98 -0.02 0.34 16 16 N -0.34 -5.31 4.31 -116.34 -0.50 -5.81 16 17 C 0.08 0.97 4.75 -4.97 -0.02 0.95 16 18 C -0.07 -0.79 4.99 -104.59 -0.52 -1.32 16 19 C -0.09 -0.92 9.67 -39.59 -0.38 -1.30 16 20 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 21 C -0.11 -0.96 10.05 -39.59 -0.40 -1.35 16 22 C -0.12 -1.22 9.83 -39.55 -0.39 -1.61 16 23 C -0.01 -0.16 6.31 -39.50 -0.25 -0.41 16 24 Cl -0.05 -0.72 27.55 -51.86 -1.43 -2.15 16 25 O -0.25 -4.31 10.09 -27.56 -0.28 -4.59 16 26 C 0.04 0.60 11.07 101.05 1.12 1.72 16 27 H 0.05 0.66 7.22 -51.93 -0.37 0.28 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 31 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 32 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.11 1.43 7.26 -51.93 -0.38 1.06 16 36 H 0.07 0.95 7.18 -51.93 -0.37 0.57 16 37 H 0.10 1.11 7.49 -51.93 -0.39 0.72 16 38 H 0.06 0.59 7.95 -51.93 -0.41 0.18 16 39 H 0.13 1.14 8.00 -52.49 -0.42 0.72 16 40 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 42 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.09 1.82 5.18 -51.93 -0.27 1.55 16 LS Contribution 388.90 15.07 5.86 5.86 Total: -1.00 -33.78 388.90 -9.28 -43.06 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.68 Total: -0.31 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.44 Total: -1.08 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: -0.20 Total: -44.92 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.38 Total: -17.55 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.43 Total: -2.15 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.78 -9.28 -43.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289763378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.938 kcal (2) G-P(sol) polarization free energy of solvation -33.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds