Wall clock time and date at job start Sat Apr 11 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46959 * 2 1 4 4 C 1.46503 * 120.00165 * 270.00308 * 3 2 1 5 5 C 1.50704 * 109.47095 * 270.00101 * 4 3 2 6 6 H 1.08002 * 119.99887 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99726 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00315 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99698 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47217 * 89.99798 * 9 7 5 11 11 H 1.48506 * 109.47003 * 209.99680 * 9 7 5 12 12 H 1.48503 * 109.47101 * 329.99410 * 9 7 5 13 13 C 1.34776 * 120.00028 * 90.00223 * 3 2 1 14 14 O 1.21281 * 120.00203 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00024 * 359.97438 * 13 3 2 16 16 N 1.46894 * 109.47123 * 179.97438 * 15 13 3 17 17 C 1.46909 * 110.99859 * 190.00056 * 16 15 13 18 18 C 1.50699 * 109.46961 * 174.99995 * 17 16 15 19 19 C 1.38237 * 120.00455 * 104.99910 * 18 17 16 20 20 C 1.38224 * 120.01313 * 179.74163 * 19 18 17 21 21 C 1.38264 * 120.02445 * 0.26351 * 20 19 18 22 22 C 1.38190 * 120.01695 * 0.02562 * 21 20 19 23 23 C 1.38328 * 120.01174 * 285.27645 * 18 17 16 24 24 Cl 1.73603 * 120.01189 * 0.02562 * 23 18 17 25 25 O 1.46298 * 110.99966 * 66.05099 * 16 15 13 26 26 C 1.42899 * 114.00126 * 243.94934 * 25 16 15 27 27 H 1.08998 * 109.46950 * 299.99620 * 1 2 3 28 28 H 1.09000 * 109.47088 * 59.99989 * 1 2 3 29 29 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47465 * 240.00470 * 2 1 3 31 31 H 1.09002 * 109.47572 * 119.99864 * 2 1 3 32 32 H 1.08998 * 109.46973 * 29.99866 * 4 3 2 33 33 H 1.09000 * 109.47527 * 150.00065 * 4 3 2 34 34 H 0.97008 * 119.99960 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.46842 * 59.99947 * 15 13 3 36 36 H 1.09003 * 109.47506 * 300.00468 * 15 13 3 37 37 H 1.08993 * 109.47031 * 55.00488 * 17 16 15 38 38 H 1.08991 * 109.47270 * 294.99980 * 17 16 15 39 39 H 1.08002 * 119.99593 * 0.02780 * 19 18 17 40 40 H 1.07996 * 119.98813 * 180.23496 * 20 19 18 41 41 H 1.08004 * 119.98845 * 179.97438 * 21 20 19 42 42 H 1.08000 * 120.00844 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.47532 * 179.97438 * 26 25 16 44 44 H 1.09004 * 109.47208 * 300.00520 * 26 25 16 45 45 H 1.09002 * 109.46669 * 59.99700 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8352 -1.7039 6 1 4.3428 1.2310 -1.0959 7 6 4.1492 2.3907 -2.8775 8 7 3.3491 3.1268 -3.6175 9 14 5.9136 2.0978 -3.4165 10 1 5.9775 0.8771 -4.2597 11 1 6.3925 3.2656 -4.1990 12 1 6.7736 1.9180 -2.2192 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9913 1.3064 2.4723 16 7 2.3102 2.2061 3.5888 17 6 2.3061 1.4813 4.8666 18 6 2.7557 2.4048 5.9693 19 6 1.8319 2.9200 6.8593 20 6 2.2449 3.7629 7.8740 21 6 3.5814 4.0954 7.9962 22 6 4.5050 3.5858 7.1036 23 6 4.0921 2.7417 6.0878 24 17 5.2518 2.1014 4.9658 25 8 1.3882 3.3414 3.6270 26 6 2.0148 4.6066 3.4067 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5816 1.6878 -2.0283 33 1 2.0954 3.1412 -1.1384 34 1 3.6752 3.5173 -4.4435 35 1 2.6212 0.4186 2.5301 36 1 0.9432 1.0125 2.5299 37 1 2.9859 0.6316 4.8046 38 1 1.2981 1.1254 5.0792 39 1 0.7879 2.6603 6.7646 40 1 1.5234 4.1621 8.5714 41 1 3.9034 4.7544 8.7891 42 1 5.5490 3.8453 7.1994 43 1 1.2645 5.3962 3.4502 44 1 2.7681 4.7779 4.1757 45 1 2.4897 4.6109 2.4256 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289763378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:11 Heat of formation + Delta-G solvation = -21.935536 kcal Electronic energy + Delta-G solvation = -28040.282723 eV Core-core repulsion = 24085.412244 eV Total energy + Delta-G solvation = -3954.870479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.76189 -40.27347 -37.98627 -37.26822 -36.75676 -35.18874 -34.81172 -32.65605 -31.61999 -31.54382 -29.64855 -28.00598 -27.17082 -25.33316 -24.42968 -23.60851 -23.52322 -22.13519 -19.94053 -18.65679 -18.37095 -17.92647 -17.65645 -17.13333 -16.65235 -16.47446 -16.23382 -16.02512 -15.94655 -15.46406 -14.84408 -14.71289 -14.64912 -14.46394 -14.17156 -14.06172 -13.95684 -13.82975 -13.52201 -13.27616 -13.13749 -12.92732 -12.68535 -12.63718 -12.48725 -12.37930 -12.34872 -12.16278 -12.15250 -11.84209 -11.69093 -11.58587 -10.89222 -10.62822 -10.33086 -9.89096 -9.65435 -9.53193 -9.34886 -8.20629 -6.34958 0.21234 0.33222 1.31627 1.35428 1.38711 1.48851 1.61232 1.94776 2.31327 2.46062 2.73455 3.08584 3.53960 3.70147 3.83004 4.06104 4.10186 4.16687 4.24387 4.31545 4.38476 4.43748 4.46615 4.53770 4.60779 4.65378 4.67431 4.78445 4.81890 4.93983 4.98144 4.99896 5.07310 5.16900 5.24878 5.31864 5.39553 5.44612 5.51091 5.61053 5.63539 5.91566 5.93805 6.02425 6.10228 6.73692 6.87384 7.31993 7.63454 8.86085 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014031 B = 0.003301 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.127374 B = 8480.827317 C = 9393.692832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.268 3.732 5 C -0.538 4.538 6 H 0.052 0.948 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.965 3.035 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.275 1.275 13 C 0.500 3.500 14 O -0.567 6.567 15 C 0.036 3.964 16 N -0.355 5.355 17 C 0.081 3.919 18 C -0.084 4.084 19 C -0.096 4.096 20 C -0.119 4.119 21 C -0.105 4.105 22 C -0.129 4.129 23 C -0.032 4.032 24 Cl -0.077 7.077 25 O -0.263 6.263 26 C 0.049 3.951 27 H 0.056 0.944 28 H 0.036 0.964 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.018 0.982 33 H -0.006 1.006 34 H 0.266 0.734 35 H 0.139 0.861 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.076 0.924 39 H 0.141 0.859 40 H 0.154 0.846 41 H 0.157 0.843 42 H 0.139 0.861 43 H 0.090 0.910 44 H 0.031 0.969 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.406 -5.978 25.011 26.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.339 5.339 4 C 0.147 3.853 5 C -0.576 4.576 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.789 3.211 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.199 1.199 13 C 0.288 3.712 14 O -0.446 6.446 15 C -0.095 4.095 16 N -0.123 5.123 17 C -0.045 4.045 18 C -0.085 4.085 19 C -0.115 4.115 20 C -0.137 4.137 21 C -0.123 4.123 22 C -0.147 4.147 23 C -0.059 4.059 24 Cl -0.048 7.048 25 O -0.268 6.268 26 C -0.048 4.048 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.036 0.964 33 H 0.012 0.988 34 H 0.075 0.925 35 H 0.156 0.844 36 H 0.113 0.887 37 H 0.131 0.869 38 H 0.094 0.906 39 H 0.159 0.841 40 H 0.172 0.828 41 H 0.174 0.826 42 H 0.157 0.843 43 H 0.108 0.892 44 H 0.049 0.951 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.866 -5.174 24.676 25.507 hybrid contribution 0.448 0.001 -1.057 1.148 sum -3.418 -5.173 23.619 24.419 Atomic orbital electron populations 1.22146 0.94849 1.03392 1.01424 1.21736 0.95090 0.81514 1.03918 1.48245 1.64525 1.15070 1.06073 1.18608 0.95020 0.91366 0.80342 1.21709 0.97907 1.31690 1.06320 0.92965 1.25828 1.02196 0.94559 0.96534 1.70056 1.37712 1.34359 1.14800 0.85459 0.79264 0.78184 0.78158 1.18746 1.20725 1.19942 1.20929 0.77534 0.86792 0.85916 1.90524 1.46740 1.19942 1.87442 1.22348 1.03755 0.95397 0.87984 1.67363 1.38378 1.03896 1.02705 1.21434 1.02421 0.94713 0.85946 1.19583 0.91651 1.00045 0.97271 1.21261 0.99460 0.96621 0.94132 1.21558 0.96661 0.97271 0.98193 1.21464 0.92848 0.99174 0.98842 1.21302 1.01652 0.97306 0.94468 1.21051 0.90498 1.00455 0.93940 1.98391 1.59042 1.85530 1.61831 1.90490 1.28360 1.13506 1.94397 1.22631 0.98253 0.83346 1.00612 0.92517 0.94487 0.88559 0.90971 0.88138 0.96368 0.98771 0.92513 0.84387 0.88730 0.86872 0.90581 0.84132 0.82798 0.82553 0.84288 0.89177 0.95061 0.93407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 10.24 71.98 0.74 -3.25 16 2 C 0.10 3.01 5.93 86.38 0.51 3.53 16 3 N -0.61 -25.92 2.46 -826.14 -2.03 -27.95 16 4 C 0.27 14.73 5.16 85.63 0.44 15.17 16 5 C -0.54 -31.53 9.39 25.60 0.24 -31.29 16 6 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.44 5.46 84.65 0.46 0.90 16 8 N -0.93 -57.26 13.29 21.44 0.28 -56.98 16 9 Si 0.96 45.92 29.54 68.60 2.03 47.95 16 10 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 13 C 0.50 21.13 7.58 87.66 0.66 21.80 16 14 O -0.57 -29.50 12.41 10.01 0.12 -29.38 16 15 C 0.04 1.04 4.31 85.56 0.37 1.41 16 16 N -0.35 -10.68 4.31 -521.99 -2.25 -12.93 16 17 C 0.08 1.79 4.75 85.55 0.41 2.20 16 18 C -0.08 -1.87 4.99 -19.84 -0.10 -1.96 16 19 C -0.10 -1.72 9.67 22.27 0.22 -1.50 16 20 C -0.12 -1.72 10.05 22.27 0.22 -1.50 16 21 C -0.11 -1.56 10.05 22.26 0.22 -1.33 16 22 C -0.13 -2.49 9.83 22.29 0.22 -2.27 16 23 C -0.03 -0.76 6.31 22.32 0.14 -0.62 16 24 Cl -0.08 -2.08 27.55 -2.72 -0.07 -2.16 16 25 O -0.26 -8.84 10.09 -37.11 -0.37 -9.21 16 26 C 0.05 1.70 11.07 113.37 1.26 2.96 16 27 H 0.06 1.34 7.22 -2.39 -0.02 1.32 16 28 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 31 H 0.10 2.25 6.44 -2.39 -0.02 2.24 16 32 H 0.02 1.03 8.07 -2.39 -0.02 1.01 16 33 H -0.01 -0.37 7.42 -2.39 -0.02 -0.39 16 34 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 35 H 0.14 3.20 7.26 -2.39 -0.02 3.18 16 36 H 0.09 2.29 7.18 -2.39 -0.02 2.27 16 37 H 0.11 2.21 7.49 -2.39 -0.02 2.19 16 38 H 0.08 1.36 7.95 -2.39 -0.02 1.34 16 39 H 0.14 2.09 8.00 -2.91 -0.02 2.06 16 40 H 0.15 1.33 8.06 -2.91 -0.02 1.30 16 41 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 42 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 43 H 0.09 2.70 8.14 -2.39 -0.02 2.69 16 44 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 45 H 0.05 2.09 5.18 -2.39 -0.01 2.08 16 Total: -1.00 -78.13 388.90 4.70 -73.43 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.98 Total: 13.00 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 6.01 Total: 4.23 kcal Atomic # 7 Polarization: -93.86 SS G_CDS: -3.99 Total: -97.86 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -0.25 Total: -38.59 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Atomic # 17 Polarization: -2.08 SS G_CDS: -0.07 Total: -2.16 kcal Total: -78.13 4.70 -73.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289763378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.495 kcal (2) G-P(sol) polarization free energy of solvation -78.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds