Wall clock time and date at job start Sat Apr 11 2020 05:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 N 1.46306 * 113.99911 * 2 1 4 4 C 1.46903 * 110.99982 * 112.19040 * 3 2 1 5 5 C 1.50698 * 109.46991 * 298.95583 * 4 3 2 6 6 C 1.38236 * 120.00720 * 259.95677 * 5 4 3 7 7 C 1.38223 * 120.01256 * 180.02562 * 6 5 4 8 8 C 1.38259 * 120.02914 * 0.02562 * 7 6 5 9 9 C 1.38197 * 120.01247 * 0.02562 * 8 7 6 10 10 C 1.38332 * 120.00648 * 79.99982 * 5 4 3 11 11 Cl 1.73597 * 120.01457 * 359.95602 * 10 5 4 12 12 C 1.46897 * 111.00159 * 236.14396 * 3 2 1 13 13 H 1.08997 * 109.47288 * 297.95418 * 12 3 2 14 14 C 1.52994 * 109.47214 * 177.95147 * 12 3 2 15 15 C 1.50704 * 109.47018 * 57.95007 * 12 3 2 16 16 O 1.21280 * 119.99710 * 25.28005 * 15 12 3 17 17 N 1.34772 * 119.99984 * 205.27498 * 15 12 3 18 18 C 1.46500 * 120.00311 * 5.02606 * 17 15 12 19 19 C 1.46508 * 119.99958 * 185.02484 * 17 15 12 20 20 C 1.50700 * 109.46764 * 90.00415 * 19 17 15 21 21 H 1.07995 * 120.00447 * 359.97438 * 20 19 17 22 22 C 1.37876 * 119.99754 * 180.02562 * 20 19 17 23 23 N 1.31516 * 119.99813 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00067 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46909 * 89.99596 * 24 22 20 26 26 H 1.48493 * 109.46808 * 209.99599 * 24 22 20 27 27 H 1.48490 * 109.46902 * 329.99826 * 24 22 20 28 28 H 1.09000 * 109.47541 * 65.68519 * 1 2 3 29 29 H 1.09007 * 109.46794 * 185.68400 * 1 2 3 30 30 H 1.08994 * 109.47354 * 305.67873 * 1 2 3 31 31 H 1.08991 * 109.47010 * 178.95615 * 4 3 2 32 32 H 1.09001 * 109.47114 * 58.95199 * 4 3 2 33 33 H 1.07998 * 119.99333 * 0.04695 * 6 5 4 34 34 H 1.07997 * 119.98228 * 180.26978 * 7 6 5 35 35 H 1.07995 * 119.99539 * 179.97438 * 8 7 6 36 36 H 1.07996 * 120.00704 * 180.02562 * 9 8 7 37 37 H 1.09005 * 109.47266 * 304.90014 * 14 12 3 38 38 H 1.08997 * 109.47196 * 64.90026 * 14 12 3 39 39 H 1.09003 * 109.47436 * 184.90332 * 14 12 3 40 40 H 1.09002 * 109.47108 * 89.10682 * 18 17 15 41 41 H 1.08995 * 109.47365 * 209.11225 * 18 17 15 42 42 H 1.09004 * 109.46946 * 329.10682 * 18 17 15 43 43 H 1.08994 * 109.46950 * 209.99714 * 19 17 15 44 44 H 1.08998 * 109.46840 * 330.00518 * 19 17 15 45 45 H 0.96999 * 119.99481 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3366 0.0000 4 6 2.7113 1.6068 1.2699 5 6 1.7186 1.5429 2.4019 6 6 1.1968 2.7088 2.9304 7 6 0.2866 2.6503 3.9691 8 6 -0.1020 1.4259 4.4803 9 6 0.4197 0.2597 3.9535 10 6 1.3300 0.3176 2.9128 11 17 1.9848 -1.1470 2.2496 12 6 2.9361 1.5068 -1.1389 13 1 3.7553 0.7924 -1.0582 14 6 3.4981 2.9298 -1.1339 15 6 2.1856 1.2675 -2.4236 16 8 0.9854 1.4367 -2.4653 17 7 2.8482 0.8656 -3.5263 18 6 4.2779 0.5552 -3.4494 19 6 2.1387 0.7391 -4.8018 20 6 2.2056 2.0480 -5.5457 21 1 2.7243 2.8899 -5.1117 22 6 1.6037 2.1708 -6.7801 23 7 0.9717 1.1457 -7.3084 24 14 1.6860 3.7935 -7.7020 25 1 2.8939 3.8114 -8.5656 26 1 0.4728 3.9461 -8.5445 27 1 1.7567 4.9127 -6.7286 28 1 -0.3634 0.4231 -0.9365 29 1 -0.3633 -1.0227 0.1018 30 1 -0.3634 0.5993 0.8347 31 1 3.1602 2.5994 1.2359 32 1 3.4904 0.8609 1.4273 33 1 1.5000 3.6655 2.5316 34 1 -0.1240 3.5612 4.3787 35 1 -0.8129 1.3809 5.2921 36 1 0.1158 -0.6966 4.3526 37 1 2.6757 3.6452 -1.1268 38 1 4.1132 3.0745 -0.2458 39 1 4.1057 3.0836 -2.0258 40 1 4.4081 -0.4962 -3.1930 41 1 4.7453 0.7547 -4.4136 42 1 4.7439 1.1762 -2.6843 43 1 2.6047 -0.0434 -5.4007 44 1 1.0966 0.4808 -4.6138 45 1 0.5486 1.2321 -8.1770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289959919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:15 Heat of formation + Delta-G solvation = 8.457322 kcal Electronic energy + Delta-G solvation = -28384.658212 eV Core-core repulsion = 24431.105666 eV Total energy + Delta-G solvation = -3953.552546 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.79086 -39.08822 -36.81681 -36.37432 -34.68755 -34.44575 -32.73212 -32.18759 -30.88986 -29.22067 -27.73037 -26.38016 -25.71008 -25.03151 -23.58606 -22.87129 -21.88859 -20.85532 -18.41748 -17.29824 -16.85967 -16.50473 -16.48070 -15.83834 -15.76307 -15.30405 -14.93718 -14.50246 -14.29133 -14.01214 -13.98176 -13.53575 -13.46220 -13.27725 -13.01407 -12.80912 -12.44582 -12.15846 -12.04895 -11.85522 -11.77296 -11.72313 -11.61735 -11.43045 -11.33958 -11.14258 -11.02096 -10.86798 -10.74241 -10.53862 -10.13318 -9.61232 -9.52351 -9.14422 -8.82593 -8.73826 -8.41389 -8.35302 -7.55051 -6.01707 -4.06672 0.96220 1.05650 2.15516 2.75719 3.30893 3.37533 3.41027 3.45882 3.52911 3.93975 4.42053 4.46416 4.56351 4.73120 4.94339 5.02288 5.10685 5.17802 5.23142 5.29680 5.32900 5.39551 5.48138 5.51841 5.66625 5.70039 5.77598 5.82179 5.91404 5.96877 6.00150 6.03855 6.16717 6.18691 6.23863 6.29824 6.42218 6.57326 6.69599 7.14124 7.25686 7.50722 7.61181 7.95524 8.26721 8.49383 8.93954 9.20088 9.58568 11.06212 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019496 B = 0.002965 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.883251 B = 9440.264820 C = 9728.190948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.237 6.237 3 N -0.342 5.342 4 C 0.073 3.927 5 C -0.067 4.067 6 C -0.090 4.090 7 C -0.121 4.121 8 C -0.109 4.109 9 C -0.119 4.119 10 C -0.017 4.017 11 Cl -0.051 7.051 12 C 0.054 3.946 13 H 0.066 0.934 14 C -0.140 4.140 15 C 0.522 3.478 16 O -0.521 6.521 17 N -0.604 5.604 18 C 0.082 3.918 19 C 0.248 3.752 20 C -0.525 4.525 21 H 0.057 0.943 22 C 0.060 3.940 23 N -0.895 5.895 24 Si 0.898 3.102 25 H -0.281 1.281 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.034 0.966 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.042 0.958 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.030 0.970 44 H 0.044 0.956 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.486 0.024 24.171 24.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.243 6.243 3 N -0.109 5.109 4 C -0.054 4.054 5 C -0.069 4.069 6 C -0.109 4.109 7 C -0.139 4.139 8 C -0.128 4.128 9 C -0.137 4.137 10 C -0.044 4.044 11 Cl -0.022 7.022 12 C -0.058 4.058 13 H 0.083 0.917 14 C -0.198 4.198 15 C 0.307 3.693 16 O -0.396 6.396 17 N -0.338 5.338 18 C -0.062 4.062 19 C 0.129 3.871 20 C -0.564 4.564 21 H 0.075 0.925 22 C -0.141 4.141 23 N -0.534 5.534 24 Si 0.725 3.275 25 H -0.207 1.207 26 H -0.211 1.211 27 H -0.199 1.199 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.122 0.878 32 H 0.077 0.923 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.061 0.939 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.048 0.952 44 H 0.062 0.938 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.519 0.047 23.820 24.079 hybrid contribution 0.633 0.221 -0.594 0.896 sum 4.152 0.269 23.227 23.596 Atomic orbital electron populations 1.22622 0.80910 1.00406 1.01508 1.90748 1.20902 1.15831 1.96841 1.67460 1.31968 1.11109 1.00410 1.21468 0.93979 1.02529 0.87434 1.19531 0.98848 0.91668 0.96805 1.21043 0.96425 0.97592 0.95864 1.21208 0.97731 0.98051 0.96886 1.21096 0.99699 0.91939 1.00027 1.21042 0.97061 0.99472 0.96162 1.20885 0.98774 0.87984 0.96781 1.98391 1.84655 1.34323 1.84836 1.21933 0.94038 0.98968 0.90839 0.91661 1.21828 1.01468 0.93897 1.02602 1.19723 0.87742 0.77992 0.83871 1.90610 1.14230 1.50610 1.84197 1.48090 1.09143 1.65735 1.10789 1.21660 0.82865 0.99066 1.02591 1.19252 0.93372 0.96888 0.77631 1.21442 1.34724 0.97696 1.02558 0.92494 1.24943 0.95039 0.96769 0.97395 1.69940 1.35450 1.30177 1.17792 0.86506 0.77456 0.83878 0.79635 1.20691 1.21113 1.19887 0.91820 0.90627 0.94693 0.87806 0.92252 0.85039 0.85492 0.85384 0.85202 0.90587 0.91831 0.90466 0.93942 0.90733 0.92610 0.95183 0.93797 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 10.19 101.05 1.03 1.74 16 2 O -0.24 -4.02 6.83 -17.38 -0.12 -4.14 16 3 N -0.34 -5.31 4.25 -109.23 -0.46 -5.78 16 4 C 0.07 0.87 4.81 -4.98 -0.02 0.85 16 5 C -0.07 -0.77 4.76 -104.59 -0.50 -1.27 16 6 C -0.09 -0.89 9.67 -39.59 -0.38 -1.27 16 7 C -0.12 -1.03 10.05 -39.58 -0.40 -1.42 16 8 C -0.11 -0.92 10.05 -39.59 -0.40 -1.31 16 9 C -0.12 -1.16 9.83 -39.55 -0.39 -1.54 16 10 C -0.02 -0.20 4.89 -39.50 -0.19 -0.39 16 11 Cl -0.05 -0.64 24.31 -51.86 -1.26 -1.90 16 12 C 0.05 0.86 1.92 -68.87 -0.13 0.73 16 13 H 0.07 0.96 6.69 -51.93 -0.35 0.61 16 14 C -0.14 -1.83 8.49 37.15 0.32 -1.51 16 15 C 0.52 11.17 6.39 -10.99 -0.07 11.10 16 16 O -0.52 -13.26 14.02 2.10 0.03 -13.23 16 17 N -0.60 -13.17 2.86 -182.95 -0.52 -13.69 16 18 C 0.08 1.36 9.94 59.85 0.59 1.95 16 19 C 0.25 6.61 5.20 -5.19 -0.03 6.58 16 20 C -0.53 -14.94 9.39 -34.44 -0.32 -15.27 16 21 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 24 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 27 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 28 H 0.06 1.26 6.40 -51.93 -0.33 0.93 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.03 0.54 7.06 -51.93 -0.37 0.18 16 31 H 0.10 1.01 5.97 -51.93 -0.31 0.70 16 32 H 0.06 0.70 7.36 -51.93 -0.38 0.32 16 33 H 0.13 1.08 8.04 -52.49 -0.42 0.66 16 34 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 35 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.06 0.60 6.54 -51.93 -0.34 0.26 16 39 H 0.08 1.02 7.35 -51.93 -0.38 0.63 16 40 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 1.24 8.06 -51.93 -0.42 0.82 16 42 H 0.06 0.74 5.46 -51.93 -0.28 0.46 16 43 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 44 H 0.04 1.33 7.36 -51.93 -0.38 0.95 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 376.52 15.07 5.67 5.67 Total: -1.00 -34.19 376.52 -8.41 -42.60 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -6.47 Total: -0.90 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -0.99 Total: 0.60 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: -0.25 Total: -45.58 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.09 Total: -17.37 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.26 Total: -1.90 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.19 -8.41 -42.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289959919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.053 kcal (2) G-P(sol) polarization free energy of solvation -34.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds