Wall clock time and date at job start Sat Apr 11 2020 05:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 N 1.46306 * 113.99911 * 2 1 4 4 C 1.46903 * 110.99982 * 112.19040 * 3 2 1 5 5 C 1.50698 * 109.46991 * 298.95583 * 4 3 2 6 6 C 1.38236 * 120.00720 * 259.95677 * 5 4 3 7 7 C 1.38223 * 120.01256 * 180.02562 * 6 5 4 8 8 C 1.38259 * 120.02914 * 0.02562 * 7 6 5 9 9 C 1.38197 * 120.01247 * 0.02562 * 8 7 6 10 10 C 1.38332 * 120.00648 * 79.99982 * 5 4 3 11 11 Cl 1.73597 * 120.01457 * 359.95602 * 10 5 4 12 12 C 1.46897 * 111.00159 * 236.14396 * 3 2 1 13 13 H 1.08997 * 109.47288 * 297.95418 * 12 3 2 14 14 C 1.52994 * 109.47214 * 177.95147 * 12 3 2 15 15 C 1.50704 * 109.47018 * 57.95007 * 12 3 2 16 16 O 1.21280 * 119.99710 * 25.28005 * 15 12 3 17 17 N 1.34772 * 119.99984 * 205.27498 * 15 12 3 18 18 C 1.46500 * 120.00311 * 5.02606 * 17 15 12 19 19 C 1.46508 * 119.99958 * 185.02484 * 17 15 12 20 20 C 1.50700 * 109.46764 * 90.00415 * 19 17 15 21 21 H 1.07995 * 120.00447 * 359.97438 * 20 19 17 22 22 C 1.37876 * 119.99754 * 180.02562 * 20 19 17 23 23 N 1.31516 * 119.99813 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00067 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46909 * 89.99596 * 24 22 20 26 26 H 1.48493 * 109.46808 * 209.99599 * 24 22 20 27 27 H 1.48490 * 109.46902 * 329.99826 * 24 22 20 28 28 H 1.09000 * 109.47541 * 65.68519 * 1 2 3 29 29 H 1.09007 * 109.46794 * 185.68400 * 1 2 3 30 30 H 1.08994 * 109.47354 * 305.67873 * 1 2 3 31 31 H 1.08991 * 109.47010 * 178.95615 * 4 3 2 32 32 H 1.09001 * 109.47114 * 58.95199 * 4 3 2 33 33 H 1.07998 * 119.99333 * 0.04695 * 6 5 4 34 34 H 1.07997 * 119.98228 * 180.26978 * 7 6 5 35 35 H 1.07995 * 119.99539 * 179.97438 * 8 7 6 36 36 H 1.07996 * 120.00704 * 180.02562 * 9 8 7 37 37 H 1.09005 * 109.47266 * 304.90014 * 14 12 3 38 38 H 1.08997 * 109.47196 * 64.90026 * 14 12 3 39 39 H 1.09003 * 109.47436 * 184.90332 * 14 12 3 40 40 H 1.09002 * 109.47108 * 89.10682 * 18 17 15 41 41 H 1.08995 * 109.47365 * 209.11225 * 18 17 15 42 42 H 1.09004 * 109.46946 * 329.10682 * 18 17 15 43 43 H 1.08994 * 109.46950 * 209.99714 * 19 17 15 44 44 H 1.08998 * 109.46840 * 330.00518 * 19 17 15 45 45 H 0.96999 * 119.99481 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3366 0.0000 4 6 2.7113 1.6068 1.2699 5 6 1.7186 1.5429 2.4019 6 6 1.1968 2.7088 2.9304 7 6 0.2866 2.6503 3.9691 8 6 -0.1020 1.4259 4.4803 9 6 0.4197 0.2597 3.9535 10 6 1.3300 0.3176 2.9128 11 17 1.9848 -1.1470 2.2496 12 6 2.9361 1.5068 -1.1389 13 1 3.7553 0.7924 -1.0582 14 6 3.4981 2.9298 -1.1339 15 6 2.1856 1.2675 -2.4236 16 8 0.9854 1.4367 -2.4653 17 7 2.8482 0.8656 -3.5263 18 6 4.2779 0.5552 -3.4494 19 6 2.1387 0.7391 -4.8018 20 6 2.2056 2.0480 -5.5457 21 1 2.7243 2.8899 -5.1117 22 6 1.6037 2.1708 -6.7801 23 7 0.9717 1.1457 -7.3084 24 14 1.6860 3.7935 -7.7020 25 1 2.8939 3.8114 -8.5656 26 1 0.4728 3.9461 -8.5445 27 1 1.7567 4.9127 -6.7286 28 1 -0.3634 0.4231 -0.9365 29 1 -0.3633 -1.0227 0.1018 30 1 -0.3634 0.5993 0.8347 31 1 3.1602 2.5994 1.2359 32 1 3.4904 0.8609 1.4273 33 1 1.5000 3.6655 2.5316 34 1 -0.1240 3.5612 4.3787 35 1 -0.8129 1.3809 5.2921 36 1 0.1158 -0.6966 4.3526 37 1 2.6757 3.6452 -1.1268 38 1 4.1132 3.0745 -0.2458 39 1 4.1057 3.0836 -2.0258 40 1 4.4081 -0.4962 -3.1930 41 1 4.7453 0.7547 -4.4136 42 1 4.7439 1.1762 -2.6843 43 1 2.6047 -0.0434 -5.4007 44 1 1.0966 0.4808 -4.6138 45 1 0.5486 1.2321 -8.1770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289959919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:14 Heat of formation + Delta-G solvation = -12.825661 kcal Electronic energy + Delta-G solvation = -28385.581111 eV Core-core repulsion = 24431.105666 eV Total energy + Delta-G solvation = -3954.475445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.94943 -40.28156 -38.05785 -37.22916 -36.48753 -35.71757 -34.67339 -33.27830 -31.59987 -30.44230 -29.52665 -27.57681 -27.17932 -26.30280 -25.29985 -23.58939 -23.21234 -21.87353 -19.94484 -18.65886 -18.31265 -18.17536 -17.58480 -17.14369 -16.88007 -16.53607 -16.11485 -16.02099 -15.81985 -15.51066 -14.80699 -14.73461 -14.64605 -14.31451 -14.04905 -14.03105 -13.93587 -13.66479 -13.49119 -13.34257 -13.07726 -13.00884 -12.75507 -12.68439 -12.62563 -12.48374 -12.28624 -12.21897 -12.18196 -12.08679 -11.69613 -11.60901 -10.78294 -10.63515 -10.41329 -9.92262 -9.66840 -9.42189 -9.36642 -8.20956 -6.36448 0.21668 0.34331 1.33407 1.37373 1.40727 1.51069 1.59866 1.90256 2.29535 2.44546 2.74891 3.08318 3.53633 3.64608 3.84209 3.97712 4.09021 4.11362 4.24503 4.32448 4.38175 4.42496 4.51471 4.57389 4.62968 4.66142 4.69367 4.73866 4.78457 4.84326 4.91578 4.96288 5.00821 5.01598 5.22257 5.24195 5.32376 5.47097 5.52964 5.57078 5.64162 5.87987 5.93301 6.00603 6.07204 6.71933 6.81863 7.30143 7.54978 8.86229 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019496 B = 0.002965 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.883251 B = 9440.264820 C = 9728.190948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.251 6.251 3 N -0.354 5.354 4 C 0.075 3.925 5 C -0.088 4.088 6 C -0.097 4.097 7 C -0.121 4.121 8 C -0.106 4.106 9 C -0.128 4.128 10 C -0.033 4.033 11 Cl -0.069 7.069 12 C 0.065 3.935 13 H 0.085 0.915 14 C -0.135 4.135 15 C 0.510 3.490 16 O -0.573 6.573 17 N -0.613 5.613 18 C 0.078 3.922 19 C 0.264 3.736 20 C -0.539 4.539 21 H 0.058 0.942 22 C 0.005 3.995 23 N -0.931 5.931 24 Si 0.971 3.029 25 H -0.263 1.263 26 H -0.283 1.283 27 H -0.269 1.269 28 H 0.023 0.977 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.131 0.869 32 H 0.061 0.939 33 H 0.147 0.853 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.140 0.860 37 H 0.060 0.940 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.018 0.982 44 H -0.006 1.006 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.047 2.102 26.159 26.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.255 6.255 3 N -0.123 5.123 4 C -0.051 4.051 5 C -0.089 4.089 6 C -0.116 4.116 7 C -0.139 4.139 8 C -0.124 4.124 9 C -0.147 4.147 10 C -0.061 4.061 11 Cl -0.040 7.040 12 C -0.047 4.047 13 H 0.103 0.897 14 C -0.193 4.193 15 C 0.298 3.702 16 O -0.452 6.452 17 N -0.346 5.346 18 C -0.065 4.065 19 C 0.142 3.858 20 C -0.578 4.578 21 H 0.076 0.924 22 C -0.194 4.194 23 N -0.571 5.571 24 Si 0.795 3.205 25 H -0.188 1.188 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.042 0.958 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.148 0.852 32 H 0.079 0.921 33 H 0.165 0.835 34 H 0.171 0.829 35 H 0.173 0.827 36 H 0.158 0.842 37 H 0.079 0.921 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.112 0.888 43 H 0.036 0.964 44 H 0.012 0.988 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.133 2.108 25.839 26.428 hybrid contribution 0.106 -0.446 -1.116 1.207 sum 5.239 1.662 24.722 25.326 Atomic orbital electron populations 1.22416 0.81188 1.00868 0.99475 1.90716 1.20613 1.17417 1.96777 1.67478 1.32836 1.10119 1.01853 1.21604 0.94006 1.03800 0.85715 1.19620 0.99768 0.92273 0.97250 1.21318 0.96469 0.97650 0.96144 1.21577 0.96910 0.99201 0.96170 1.21468 0.99403 0.91360 1.00183 1.21281 0.96812 1.00698 0.95894 1.21071 0.99806 0.87455 0.97730 1.98378 1.85017 1.35429 1.85211 1.21896 0.93518 1.01360 0.87913 0.89741 1.21879 1.01401 0.91123 1.04885 1.20793 0.87553 0.76507 0.85359 1.90588 1.16731 1.52579 1.85260 1.48116 1.11234 1.65853 1.09358 1.21933 0.79686 1.00984 1.03859 1.18689 0.91189 0.96060 0.79852 1.21702 1.34880 0.98153 1.03036 0.92411 1.25917 0.94386 1.00684 0.98402 1.70076 1.36184 1.32527 1.18322 0.85370 0.78031 0.78902 0.78240 1.18803 1.20865 1.19373 0.95845 0.89520 0.93968 0.85172 0.92083 0.83523 0.82882 0.82671 0.84225 0.92074 0.87320 0.90337 0.92243 0.91048 0.88785 0.96442 0.98790 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.00 10.19 113.37 1.16 3.15 16 2 O -0.25 -8.55 6.83 -46.87 -0.32 -8.87 16 3 N -0.35 -10.66 4.25 -499.48 -2.12 -12.79 16 4 C 0.08 1.63 4.81 85.56 0.41 2.04 16 5 C -0.09 -1.87 4.76 -19.84 -0.09 -1.97 16 6 C -0.10 -1.67 9.67 22.27 0.22 -1.45 16 7 C -0.12 -1.69 10.05 22.27 0.22 -1.47 16 8 C -0.11 -1.49 10.05 22.26 0.22 -1.27 16 9 C -0.13 -2.30 9.83 22.29 0.22 -2.08 16 10 C -0.03 -0.74 4.89 22.33 0.11 -0.63 16 11 Cl -0.07 -1.70 24.31 -2.72 -0.07 -1.77 16 12 C 0.06 1.97 1.92 44.17 0.08 2.06 16 13 H 0.08 2.25 6.69 -2.39 -0.02 2.23 16 14 C -0.14 -3.14 8.49 71.98 0.61 -2.53 16 15 C 0.51 22.24 6.39 87.66 0.56 22.80 16 16 O -0.57 -30.66 14.02 0.28 0.00 -30.66 16 17 N -0.61 -27.20 2.86 -851.12 -2.43 -29.63 16 18 C 0.08 2.45 9.94 127.77 1.27 3.72 16 19 C 0.26 14.75 5.20 85.63 0.44 15.19 16 20 C -0.54 -31.40 9.39 25.60 0.24 -31.16 16 21 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16 22 C 0.00 0.28 5.46 84.65 0.46 0.74 16 23 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 24 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 25 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 27 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 28 H 0.02 0.98 6.40 -2.39 -0.02 0.96 16 29 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 30 H 0.04 1.34 7.06 -2.39 -0.02 1.32 16 31 H 0.13 2.05 5.97 -2.39 -0.01 2.03 16 32 H 0.06 1.31 7.36 -2.39 -0.02 1.29 16 33 H 0.15 1.97 8.04 -2.91 -0.02 1.94 16 34 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 35 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 36 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 37 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.11 1.55 6.54 -2.39 -0.02 1.53 16 39 H 0.08 1.83 7.35 -2.39 -0.02 1.81 16 40 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.07 2.30 8.06 -2.39 -0.02 2.28 16 42 H 0.09 2.23 5.46 -2.39 -0.01 2.22 16 43 H 0.02 1.00 8.07 -2.39 -0.02 0.98 16 44 H -0.01 -0.39 7.36 -2.39 -0.02 -0.41 16 45 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -79.00 376.52 4.50 -74.50 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.99 Total: 12.11 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 6.14 Total: 7.16 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -4.27 Total: -99.62 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -0.32 Total: -39.53 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -0.07 Total: -1.77 kcal Total: -79.00 4.50 -74.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289959919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.676 kcal (2) G-P(sol) polarization free energy of solvation -79.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds