Wall clock time and date at job start Sat Apr 11 2020 05:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46508 * 109.46839 * 2 1 4 4 C 1.46495 * 120.00366 * 270.00099 * 3 2 1 5 5 C 1.50705 * 109.47039 * 270.00540 * 4 3 2 6 6 H 1.08000 * 119.99956 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99584 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00652 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99624 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46841 * 60.00207 * 9 7 5 11 11 H 1.48500 * 109.47096 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47457 * 299.99958 * 9 7 5 13 13 C 1.34779 * 119.99517 * 90.00200 * 3 2 1 14 14 O 1.21282 * 119.99648 * 179.97438 * 13 3 2 15 15 C 1.50693 * 120.00403 * 0.02562 * 13 3 2 16 16 N 1.46500 * 109.47631 * 179.97438 * 15 13 3 17 17 S 1.65591 * 120.00361 * 164.99704 * 16 15 13 18 18 O 1.42101 * 106.40500 * 311.46049 * 17 16 15 19 19 O 1.42104 * 106.40278 * 178.54374 * 17 16 15 20 20 C 1.76195 * 107.22084 * 65.00206 * 17 16 15 21 21 C 1.38233 * 120.00186 * 89.99343 * 20 17 16 22 22 C 1.38234 * 120.00037 * 179.72636 * 21 20 17 23 23 C 1.38234 * 120.00240 * 0.26327 * 22 21 20 24 24 C 1.50700 * 120.00260 * 179.97438 * 23 22 21 25 25 C 1.38238 * 119.99693 * 0.02562 * 23 22 21 26 26 C 1.38234 * 120.00047 * 359.95697 * 25 23 22 27 27 H 1.08998 * 109.47426 * 299.99925 * 1 2 3 28 28 H 1.09000 * 109.47542 * 59.99554 * 1 2 3 29 29 H 1.09001 * 109.47240 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47011 * 240.00410 * 2 1 3 31 31 H 1.08991 * 109.47259 * 120.00352 * 2 1 3 32 32 H 1.09004 * 109.47060 * 30.00213 * 4 3 2 33 33 H 1.08999 * 109.47374 * 149.99835 * 4 3 2 34 34 H 0.96991 * 120.00145 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.47410 * 59.99360 * 15 13 3 36 36 H 1.09006 * 109.47033 * 300.00092 * 15 13 3 37 37 H 0.96998 * 119.99441 * 345.00395 * 16 15 13 38 38 H 1.08002 * 120.00157 * 0.02562 * 21 20 17 39 39 H 1.07999 * 120.00009 * 180.28389 * 22 21 20 40 40 H 1.09000 * 109.46827 * 89.99810 * 24 23 22 41 41 H 1.08999 * 109.47240 * 210.00239 * 24 23 22 42 42 H 1.08999 * 109.46861 * 329.99859 * 24 23 22 43 43 H 1.08001 * 119.99658 * 179.97438 * 25 23 22 44 44 H 1.07999 * 119.99990 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0720 -1.2686 5 6 3.6857 1.8352 -1.7037 6 1 4.3428 1.2310 -1.0958 7 6 4.1489 2.3899 -2.8779 8 7 3.3486 3.1252 -3.6185 9 14 5.9134 2.0969 -3.4169 10 1 6.1415 0.6402 -3.5938 11 1 6.1604 2.7959 -4.7036 12 1 6.8406 2.6211 -2.3823 13 6 2.2429 2.0166 1.1673 14 8 2.6475 3.1599 1.1673 15 6 1.9923 1.3060 2.4723 16 7 2.3101 2.2032 3.5859 17 16 1.7892 1.8413 5.1155 18 8 0.4095 1.5197 5.0041 19 8 2.2811 2.8718 5.9613 20 6 2.6070 0.3604 5.6083 21 6 3.8242 0.4271 6.2600 22 6 4.4631 -0.7346 6.6516 23 6 3.8873 -1.9631 6.3867 24 6 4.5840 -3.2295 6.8131 25 6 2.6729 -2.0299 5.7297 26 6 2.0338 -0.8683 5.3384 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.5816 1.6879 -2.0283 33 1 2.0954 3.1412 -1.1383 34 1 3.6744 3.5151 -4.4447 35 1 2.6229 0.4186 2.5298 36 1 0.9445 1.0113 2.5302 37 1 2.8256 3.0094 3.4272 38 1 4.2738 1.3869 6.4675 39 1 5.4119 -0.6823 7.1648 40 1 4.2625 -3.5000 7.8189 41 1 4.3312 -4.0336 6.1222 42 1 5.6623 -3.0707 6.8068 43 1 2.2232 -2.9897 5.5224 44 1 1.0849 -0.9205 4.8255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290312339.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:20 Heat of formation + Delta-G solvation = -87.470284 kcal Electronic energy + Delta-G solvation = -27533.760859 eV Core-core repulsion = 23578.092286 eV Total energy + Delta-G solvation = -3955.668573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.64650 -39.30703 -37.31677 -35.93855 -35.59651 -34.55012 -33.37264 -32.80734 -31.38363 -30.17238 -28.23990 -27.65827 -26.04174 -23.21328 -23.09422 -22.51912 -22.24445 -19.72664 -18.84008 -18.24316 -17.52684 -16.58460 -16.49312 -16.01211 -15.87689 -15.69615 -15.35310 -14.83426 -14.73682 -14.52588 -14.25141 -13.90671 -13.84706 -13.45385 -13.41193 -12.84758 -12.73403 -12.64186 -12.44032 -12.23660 -12.20539 -12.14435 -12.09202 -11.95780 -11.62648 -11.50005 -11.24696 -11.00514 -10.95951 -10.80778 -10.57615 -10.18724 -9.74768 -9.66730 -9.43557 -9.36968 -9.07994 -8.47359 -7.78355 -6.08506 -4.13741 0.22186 0.54036 0.98180 2.81403 3.18615 3.22967 3.28731 3.33756 3.36794 3.67668 3.79562 4.17066 4.37897 4.40453 4.45603 4.57487 4.77577 4.90462 4.96452 5.11242 5.12057 5.23440 5.25873 5.26792 5.27851 5.36910 5.55310 5.57441 5.58396 5.63532 5.73898 5.78226 5.82514 6.00627 6.09137 6.18308 6.45304 6.51289 6.95736 7.01594 7.38292 7.44776 7.86994 8.17639 8.28616 8.80062 8.95297 9.51364 10.99606 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012081 B = 0.003122 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.115595 B = 8966.848659 C = 9604.131076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.246 3.754 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.505 3.495 14 O -0.532 6.532 15 C 0.095 3.905 16 N -1.102 6.102 17 S 2.701 3.299 18 O -0.957 6.957 19 O -0.957 6.957 20 C -0.683 4.683 21 C -0.012 4.012 22 C -0.144 4.144 23 C -0.032 4.032 24 C -0.124 4.124 25 C -0.143 4.143 26 C -0.017 4.017 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.429 0.571 38 H 0.141 0.859 39 H 0.132 0.868 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.133 0.867 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.831 -14.046 19.282 23.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.022 4.022 3 N -0.324 5.324 4 C 0.127 3.873 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.289 3.711 14 O -0.410 6.410 15 C -0.035 4.035 16 N -0.866 5.866 17 S 2.789 3.211 18 O -0.947 6.947 19 O -0.947 6.947 20 C -0.770 4.770 21 C -0.032 4.032 22 C -0.163 4.163 23 C -0.032 4.032 24 C -0.180 4.180 25 C -0.162 4.162 26 C -0.036 4.036 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.122 0.878 37 H 0.268 0.732 38 H 0.159 0.841 39 H 0.150 0.850 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.150 0.850 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.319 -13.011 19.578 23.621 hybrid contribution 1.709 -0.555 -0.602 1.895 sum -0.610 -13.566 18.976 23.334 Atomic orbital electron populations 1.22257 0.96460 1.01725 1.02689 1.21501 0.93799 0.83968 1.02938 1.48245 1.63267 1.13352 1.07553 1.19318 0.96381 0.93717 0.77841 1.21379 0.96862 1.32199 1.06371 0.92476 1.24931 0.97865 0.94867 0.96369 1.69915 1.35753 1.33262 1.14314 0.86555 0.84735 0.78229 0.77857 1.20264 1.21157 1.20195 1.20008 0.79074 0.87094 0.84898 1.90669 1.45879 1.17831 1.86576 1.21228 1.02550 0.92843 0.86897 1.55218 1.73167 1.35447 1.22732 1.01675 0.73875 0.73442 0.72071 1.93581 1.30167 1.84997 1.85960 1.93595 1.81503 1.54893 1.64746 1.30996 1.10237 1.19191 1.16553 1.20950 0.91433 0.99671 0.91107 1.21193 1.00952 0.91890 1.02216 1.20298 0.93994 0.95561 0.93366 1.20947 1.00588 0.94397 1.02108 1.21188 0.95607 0.98760 1.00620 1.20971 0.98107 0.90909 0.93642 0.92743 0.91836 0.91920 0.89559 0.91675 0.94746 0.93742 0.92593 0.89313 0.87843 0.73151 0.84093 0.85040 0.90385 0.90842 0.90904 0.84952 0.84030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.24 37.16 0.38 -1.77 16 2 C 0.10 1.49 5.93 -4.04 -0.02 1.47 16 3 N -0.59 -11.77 2.46 -175.06 -0.43 -12.20 16 4 C 0.25 6.20 5.16 -5.19 -0.03 6.17 16 5 C -0.53 -14.55 9.39 -34.44 -0.32 -14.87 16 6 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 9 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.51 9.88 7.74 -10.99 -0.09 9.80 16 14 O -0.53 -12.65 15.31 5.56 0.09 -12.57 16 15 C 0.09 1.33 5.25 -5.20 -0.03 1.30 16 16 N -1.10 -15.19 5.93 -11.66 -0.07 -15.25 16 17 S 2.70 34.85 5.74 -107.50 -0.62 34.23 16 18 O -0.96 -14.09 16.76 -57.17 -0.96 -15.05 16 19 O -0.96 -14.53 17.28 -57.17 -0.99 -15.52 16 20 C -0.68 -7.51 5.95 -39.58 -0.24 -7.74 16 21 C -0.01 -0.13 9.52 -39.58 -0.38 -0.50 16 22 C -0.14 -1.25 9.70 -39.58 -0.38 -1.63 16 23 C -0.03 -0.26 5.88 -104.62 -0.62 -0.87 16 24 C -0.12 -0.65 10.01 36.01 0.36 -0.29 16 25 C -0.14 -1.18 9.70 -39.58 -0.38 -1.57 16 26 C -0.02 -0.16 9.52 -39.58 -0.38 -0.54 16 27 H 0.05 0.65 7.22 -51.93 -0.38 0.28 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 31 H 0.06 0.74 6.44 -51.93 -0.33 0.41 16 32 H 0.03 0.87 8.07 -51.93 -0.42 0.46 16 33 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.09 1.00 7.40 -51.93 -0.38 0.61 16 36 H 0.10 1.24 6.80 -51.93 -0.35 0.89 16 37 H 0.43 6.29 7.70 -34.46 -0.27 6.03 16 38 H 0.14 1.31 7.62 -52.49 -0.40 0.91 16 39 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 42 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 43 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.14 1.16 7.62 -52.49 -0.40 0.76 16 LS Contribution 384.28 15.07 5.79 5.79 Total: -1.00 -36.19 384.28 -9.92 -46.11 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -6.23 Total: 2.83 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -2.22 Total: -9.41 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.24 Total: -52.81 kcal Atomic # 8 Polarization: -41.28 SS G_CDS: -1.86 Total: -43.14 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 34.85 SS G_CDS: -0.62 Total: 34.23 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.19 -9.92 -46.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290312339.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.359 kcal (2) G-P(sol) polarization free energy of solvation -36.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds