Wall clock time and date at job start Sat Apr 11 2020 05:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46508 * 109.46839 * 2 1 4 4 C 1.46495 * 120.00366 * 270.00099 * 3 2 1 5 5 C 1.50705 * 109.47039 * 270.00540 * 4 3 2 6 6 H 1.08000 * 119.99956 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99584 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00652 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99624 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46841 * 60.00207 * 9 7 5 11 11 H 1.48500 * 109.47096 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47457 * 299.99958 * 9 7 5 13 13 C 1.34779 * 119.99517 * 90.00200 * 3 2 1 14 14 O 1.21282 * 119.99648 * 179.97438 * 13 3 2 15 15 C 1.50693 * 120.00403 * 0.02562 * 13 3 2 16 16 N 1.46500 * 109.47631 * 179.97438 * 15 13 3 17 17 S 1.65591 * 120.00361 * 164.99704 * 16 15 13 18 18 O 1.42101 * 106.40500 * 311.46049 * 17 16 15 19 19 O 1.42104 * 106.40278 * 178.54374 * 17 16 15 20 20 C 1.76195 * 107.22084 * 65.00206 * 17 16 15 21 21 C 1.38233 * 120.00186 * 89.99343 * 20 17 16 22 22 C 1.38234 * 120.00037 * 179.72636 * 21 20 17 23 23 C 1.38234 * 120.00240 * 0.26327 * 22 21 20 24 24 C 1.50700 * 120.00260 * 179.97438 * 23 22 21 25 25 C 1.38238 * 119.99693 * 0.02562 * 23 22 21 26 26 C 1.38234 * 120.00047 * 359.95697 * 25 23 22 27 27 H 1.08998 * 109.47426 * 299.99925 * 1 2 3 28 28 H 1.09000 * 109.47542 * 59.99554 * 1 2 3 29 29 H 1.09001 * 109.47240 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47011 * 240.00410 * 2 1 3 31 31 H 1.08991 * 109.47259 * 120.00352 * 2 1 3 32 32 H 1.09004 * 109.47060 * 30.00213 * 4 3 2 33 33 H 1.08999 * 109.47374 * 149.99835 * 4 3 2 34 34 H 0.96991 * 120.00145 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.47410 * 59.99360 * 15 13 3 36 36 H 1.09006 * 109.47033 * 300.00092 * 15 13 3 37 37 H 0.96998 * 119.99441 * 345.00395 * 16 15 13 38 38 H 1.08002 * 120.00157 * 0.02562 * 21 20 17 39 39 H 1.07999 * 120.00009 * 180.28389 * 22 21 20 40 40 H 1.09000 * 109.46827 * 89.99810 * 24 23 22 41 41 H 1.08999 * 109.47240 * 210.00239 * 24 23 22 42 42 H 1.08999 * 109.46861 * 329.99859 * 24 23 22 43 43 H 1.08001 * 119.99658 * 179.97438 * 25 23 22 44 44 H 1.07999 * 119.99990 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0720 -1.2686 5 6 3.6857 1.8352 -1.7037 6 1 4.3428 1.2310 -1.0958 7 6 4.1489 2.3899 -2.8779 8 7 3.3486 3.1252 -3.6185 9 14 5.9134 2.0969 -3.4169 10 1 6.1415 0.6402 -3.5938 11 1 6.1604 2.7959 -4.7036 12 1 6.8406 2.6211 -2.3823 13 6 2.2429 2.0166 1.1673 14 8 2.6475 3.1599 1.1673 15 6 1.9923 1.3060 2.4723 16 7 2.3101 2.2032 3.5859 17 16 1.7892 1.8413 5.1155 18 8 0.4095 1.5197 5.0041 19 8 2.2811 2.8718 5.9613 20 6 2.6070 0.3604 5.6083 21 6 3.8242 0.4271 6.2600 22 6 4.4631 -0.7346 6.6516 23 6 3.8873 -1.9631 6.3867 24 6 4.5840 -3.2295 6.8131 25 6 2.6729 -2.0299 5.7297 26 6 2.0338 -0.8683 5.3384 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.5816 1.6879 -2.0283 33 1 2.0954 3.1412 -1.1383 34 1 3.6744 3.5151 -4.4447 35 1 2.6229 0.4186 2.5298 36 1 0.9445 1.0113 2.5302 37 1 2.8256 3.0094 3.4272 38 1 4.2738 1.3869 6.4675 39 1 5.4119 -0.6823 7.1648 40 1 4.2625 -3.5000 7.8189 41 1 4.3312 -4.0336 6.1222 42 1 5.6623 -3.0707 6.8068 43 1 2.2232 -2.9897 5.5224 44 1 1.0849 -0.9205 4.8255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290312339.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:19 Heat of formation + Delta-G solvation = -113.716056 kcal Electronic energy + Delta-G solvation = -27534.898961 eV Core-core repulsion = 23578.092286 eV Total energy + Delta-G solvation = -3956.806675 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.85154 -40.28039 -38.41949 -37.12394 -37.03899 -35.80170 -34.83330 -33.96696 -32.03067 -31.61232 -29.83202 -28.19661 -27.65521 -24.76147 -24.01455 -23.82804 -22.90375 -20.73184 -20.22788 -19.19794 -18.74421 -18.51270 -17.78401 -17.34879 -17.03708 -16.52510 -16.52091 -16.30836 -15.83654 -15.48426 -15.22623 -14.82924 -14.70553 -14.69648 -14.50237 -14.28858 -13.89994 -13.59206 -13.33291 -13.25244 -13.24754 -13.21154 -13.19434 -13.10263 -13.09997 -13.04006 -12.62346 -12.48882 -12.14307 -12.08908 -11.89801 -11.79574 -11.72609 -10.88661 -10.63005 -10.55738 -10.08217 -10.02745 -9.47540 -8.21316 -6.36000 -0.74273 -0.20871 0.32898 1.37878 1.41982 1.49060 1.71914 1.82911 2.28357 2.42425 2.48780 2.73420 3.08767 3.24954 3.48440 3.78678 3.88025 3.95789 4.03134 4.19576 4.29112 4.32668 4.37475 4.46733 4.51410 4.68337 4.68616 4.71279 4.82353 4.99808 5.02211 5.02772 5.08676 5.10296 5.11708 5.24328 5.26551 5.44409 5.50624 5.57952 5.81532 5.84734 5.89797 6.06738 6.68624 6.76406 7.26001 7.40949 8.85749 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012081 B = 0.003122 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.115595 B = 8966.848659 C = 9604.131076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.093 3.907 3 N -0.597 5.597 4 C 0.261 3.739 5 C -0.543 4.543 6 H 0.057 0.943 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.259 1.259 11 H -0.281 1.281 12 H -0.278 1.278 13 C 0.495 3.505 14 O -0.587 6.587 15 C 0.104 3.896 16 N -1.109 6.109 17 S 2.716 3.284 18 O -0.978 6.978 19 O -0.987 6.987 20 C -0.690 4.690 21 C -0.031 4.031 22 C -0.151 4.151 23 C -0.032 4.032 24 C -0.123 4.123 25 C -0.145 4.145 26 C -0.027 4.027 27 H 0.060 0.940 28 H 0.038 0.962 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.025 0.975 33 H -0.003 1.003 34 H 0.267 0.733 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.424 0.576 38 H 0.140 0.860 39 H 0.152 0.848 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.161 0.839 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.988 -17.814 20.644 27.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.029 4.029 3 N -0.328 5.328 4 C 0.140 3.860 5 C -0.581 4.581 6 H 0.076 0.924 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.183 1.183 11 H -0.206 1.206 12 H -0.204 1.204 13 C 0.282 3.718 14 O -0.468 6.468 15 C -0.025 4.025 16 N -0.871 5.871 17 S 2.809 3.191 18 O -0.968 6.968 19 O -0.977 6.977 20 C -0.780 4.780 21 C -0.051 4.051 22 C -0.170 4.170 23 C -0.032 4.032 24 C -0.180 4.180 25 C -0.163 4.163 26 C -0.046 4.046 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.126 0.874 32 H 0.043 0.957 33 H 0.015 0.985 34 H 0.075 0.925 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.262 0.738 38 H 0.158 0.842 39 H 0.169 0.831 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.178 0.822 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.523 -16.803 20.943 26.894 hybrid contribution 1.436 0.538 -0.960 1.809 sum -0.087 -16.265 19.983 25.766 Atomic orbital electron populations 1.22217 0.94639 1.03861 1.01816 1.21891 0.95317 0.81005 1.04685 1.48247 1.63333 1.15298 1.05969 1.18742 0.95429 0.91576 0.80253 1.21699 0.97836 1.32066 1.06510 0.92429 1.25858 1.02311 0.94506 0.96505 1.70046 1.37838 1.34241 1.14783 0.85480 0.79082 0.79059 0.77254 1.18299 1.20649 1.20360 1.20972 0.77713 0.86705 0.86450 1.90639 1.48192 1.20387 1.87561 1.21324 1.04911 0.92937 0.83349 1.55261 1.73209 1.35563 1.23072 1.00921 0.73294 0.73582 0.71262 1.93543 1.31720 1.85413 1.86095 1.93549 1.81896 1.56929 1.65355 1.30530 1.10873 1.18239 1.18391 1.21125 0.91625 1.00553 0.91787 1.21499 1.01732 0.91667 1.02081 1.20723 0.93929 0.96389 0.92146 1.21025 1.00775 0.93209 1.02952 1.21562 0.95536 0.99423 0.99825 1.21255 0.98754 0.90734 0.93895 0.92102 0.94284 0.88191 0.90349 0.87362 0.95723 0.98526 0.92462 0.85636 0.85300 0.73849 0.84202 0.83062 0.89196 0.89633 0.90188 0.82165 0.82642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.79 10.24 71.98 0.74 -3.06 16 2 C 0.09 2.53 5.93 86.38 0.51 3.04 16 3 N -0.60 -23.90 2.46 -826.16 -2.03 -25.93 16 4 C 0.26 13.75 5.16 85.64 0.44 14.19 16 5 C -0.54 -30.46 9.39 25.60 0.24 -30.22 16 6 H 0.06 3.15 7.81 -2.91 -0.02 3.12 16 7 C 0.01 0.41 5.46 84.65 0.46 0.87 16 8 N -0.93 -55.81 13.29 21.45 0.28 -55.52 16 9 Si 0.97 44.10 29.54 68.60 2.03 46.13 16 10 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 C 0.49 19.51 7.74 87.65 0.68 20.19 16 14 O -0.59 -29.20 15.31 -3.04 -0.05 -29.25 16 15 C 0.10 2.73 5.25 85.63 0.45 3.18 16 16 N -1.11 -30.29 5.93 -190.79 -1.13 -31.43 16 17 S 2.72 69.02 5.74 -56.49 -0.32 68.69 16 18 O -0.98 -27.92 16.76 -128.00 -2.15 -30.07 16 19 O -0.99 -30.62 17.28 -128.00 -2.21 -32.84 16 20 C -0.69 -14.08 5.95 22.27 0.13 -13.95 16 21 C -0.03 -0.61 9.52 22.27 0.21 -0.39 16 22 C -0.15 -2.26 9.70 22.27 0.22 -2.05 16 23 C -0.03 -0.40 5.88 -19.86 -0.12 -0.51 16 24 C -0.12 -0.80 10.01 71.24 0.71 -0.08 16 25 C -0.14 -1.85 9.70 22.27 0.22 -1.63 16 26 C -0.03 -0.44 9.52 22.27 0.21 -0.23 16 27 H 0.06 1.30 7.22 -2.39 -0.02 1.29 16 28 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.08 2.27 8.07 -2.39 -0.02 2.25 16 31 H 0.11 2.02 6.44 -2.39 -0.02 2.00 16 32 H 0.02 1.32 8.07 -2.39 -0.02 1.30 16 33 H 0.00 -0.21 7.42 -2.39 -0.02 -0.23 16 34 H 0.27 15.08 8.31 -92.72 -0.77 14.31 16 35 H 0.13 2.38 7.40 -2.39 -0.02 2.36 16 36 H 0.13 2.74 6.80 -2.38 -0.02 2.72 16 37 H 0.42 12.89 7.70 -96.75 -0.75 12.15 16 38 H 0.14 2.58 7.62 -2.91 -0.02 2.56 16 39 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.08 0.38 8.09 -2.39 -0.02 0.36 16 42 H 0.08 0.43 8.09 -2.39 -0.02 0.41 16 43 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 44 H 0.16 2.01 7.62 -2.91 -0.02 1.99 16 Total: -1.00 -82.54 384.28 -0.20 -82.74 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.27 Total: 18.12 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: 5.11 Total: -10.66 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -2.88 Total: -112.88 kcal Atomic # 8 Polarization: -87.75 SS G_CDS: -4.40 Total: -92.15 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: 69.02 SS G_CDS: -0.32 Total: 68.69 kcal Total: -82.54 -0.20 -82.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290312339.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.974 kcal (2) G-P(sol) polarization free energy of solvation -82.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds