Wall clock time and date at job start Sat Apr 11 2020 05:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47241 * 2 1 4 4 C 1.50699 * 109.46967 * 239.99716 * 2 1 3 5 5 H 1.08001 * 120.00212 * 239.99809 * 4 2 1 6 6 C 1.37876 * 120.00118 * 60.00244 * 4 2 1 7 7 N 1.31518 * 119.99867 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99965 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.46814 * 269.99806 * 8 6 4 10 10 H 1.48502 * 109.46977 * 29.99894 * 8 6 4 11 11 H 1.48498 * 109.47293 * 149.99910 * 8 6 4 12 12 N 1.46497 * 109.47018 * 119.99853 * 2 1 3 13 13 C 1.46493 * 120.00193 * 60.00061 * 12 2 1 14 14 C 1.34780 * 119.99761 * 239.99931 * 12 2 1 15 15 O 1.21547 * 120.00353 * 6.98534 * 14 12 2 16 16 C 1.47847 * 119.99932 * 186.98829 * 14 12 2 17 17 C 1.39605 * 120.14271 * 20.29710 * 16 14 12 18 18 C 1.37939 * 119.85007 * 179.74891 * 17 16 14 19 19 C 1.38379 * 120.14660 * 0.52740 * 18 17 16 20 20 C 1.38338 * 120.29252 * 359.74950 * 19 18 17 21 21 S 1.76203 * 119.93027 * 179.97438 * 20 19 18 22 22 O 1.42101 * 106.39894 * 23.51308 * 21 20 19 23 23 O 1.42091 * 106.40369 * 156.43334 * 21 20 19 24 24 N 1.65596 * 107.21708 * 269.97825 * 21 20 19 25 25 C 1.46492 * 120.00407 * 89.99681 * 24 21 20 26 26 C 1.46506 * 119.99587 * 269.99671 * 24 21 20 27 27 C 1.37978 * 120.14456 * 359.97227 * 20 19 18 28 28 H 1.09000 * 109.46968 * 300.00312 * 1 2 3 29 29 H 1.09000 * 109.47199 * 60.00053 * 1 2 3 30 30 H 1.08996 * 109.47047 * 180.02562 * 1 2 3 31 31 H 0.97008 * 119.99306 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47391 * 85.92508 * 13 12 2 33 33 H 1.09007 * 109.47632 * 205.92572 * 13 12 2 34 34 H 1.08996 * 109.47281 * 325.92516 * 13 12 2 35 35 H 1.08000 * 120.07307 * 359.97438 * 17 16 14 36 36 H 1.07998 * 119.92491 * 180.27380 * 18 17 16 37 37 H 1.08002 * 119.85629 * 179.76205 * 19 18 17 38 38 H 1.09000 * 109.46984 * 59.99746 * 25 24 21 39 39 H 1.09006 * 109.47577 * 180.02562 * 25 24 21 40 40 H 1.09002 * 109.47242 * 300.00290 * 25 24 21 41 41 H 1.08996 * 109.46876 * 90.00282 * 26 24 21 42 42 H 1.09000 * 109.47172 * 209.99957 * 26 24 21 43 43 H 1.09000 * 109.47167 * 329.99916 * 26 24 21 44 44 H 1.08000 * 120.07775 * 180.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 2.1380 -0.8593 -3.5565 8 14 0.6248 1.2790 -2.6542 9 1 -0.8028 0.8725 -2.6999 10 1 0.8470 2.1764 -1.4921 11 1 0.9759 1.9950 -3.9069 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7932 -0.0355 2.0833 15 8 2.9827 1.1587 1.9594 16 6 3.4127 -0.7695 3.2073 17 6 3.5654 -2.1556 3.1401 18 6 4.1489 -2.8337 4.1900 19 6 4.5726 -2.1445 5.3127 20 6 4.4190 -0.7718 5.3881 21 16 4.9613 0.0961 6.8225 22 8 5.9565 -0.7159 7.4303 23 8 5.1944 1.4374 6.4157 24 7 3.6865 0.1425 7.8784 25 6 3.5095 -0.9300 8.8605 26 6 2.7358 1.2561 7.8305 27 6 3.8421 -0.0806 4.3424 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.9034 -0.5280 -4.4375 32 1 2.3753 -2.7375 0.9109 33 1 1.6944 -2.3035 2.4972 34 1 0.6602 -2.2819 1.0487 35 1 3.2307 -2.6952 2.2665 36 1 4.2716 -3.9054 4.1374 37 1 5.0254 -2.6807 6.1336 38 1 4.3855 -0.9787 9.5073 39 1 2.6235 -0.7286 9.4628 40 1 3.3874 -1.8810 8.3420 41 1 1.9238 1.0113 7.1459 42 1 2.3305 1.4310 8.8271 43 1 3.2458 2.1545 7.4828 44 1 3.7231 0.9911 4.4023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330574824.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:27 Heat of formation + Delta-G solvation = -37.576072 kcal Electronic energy + Delta-G solvation = -27972.664389 eV Core-core repulsion = 24019.159392 eV Total energy + Delta-G solvation = -3953.504997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.29924 -38.25446 -37.49745 -36.49192 -36.04196 -35.78456 -33.25954 -31.76208 -31.30659 -29.93143 -28.45296 -26.84422 -25.24842 -25.04249 -24.07597 -23.27870 -21.36319 -19.66537 -18.93977 -18.00162 -17.56859 -16.94664 -16.61998 -16.42250 -15.92521 -15.73363 -15.13000 -15.02921 -14.76894 -14.54718 -14.27581 -13.96377 -13.57649 -13.30115 -13.25207 -13.03151 -12.89133 -12.76852 -12.58420 -12.45895 -12.29338 -12.28328 -11.95167 -11.88836 -11.85744 -11.72841 -11.42882 -11.24419 -10.97035 -10.64569 -10.20576 -9.75459 -9.58092 -9.46035 -9.41248 -9.29023 -9.13147 -8.70817 -7.89206 -6.22029 -4.23841 0.09169 0.55514 0.91540 2.58768 2.96304 3.18312 3.32866 3.34935 3.45839 3.55871 3.74022 4.04939 4.28870 4.41193 4.57118 4.63521 4.80144 4.93092 4.97184 5.01409 5.11572 5.20083 5.23572 5.35646 5.36979 5.45165 5.47317 5.55629 5.64457 5.75656 5.77744 5.97776 6.03762 6.09125 6.13341 6.15277 6.23604 6.37568 6.55439 6.74926 7.00781 7.19786 7.51861 8.00564 8.35195 8.66758 8.78321 9.38229 10.90438 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021861 B = 0.002892 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.524468 B = 9680.477315 C =10092.495922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.230 3.770 3 H 0.065 0.935 4 C -0.532 4.532 5 H 0.079 0.921 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.262 1.262 11 H -0.293 1.293 12 N -0.579 5.579 13 C 0.071 3.929 14 C 0.547 3.453 15 O -0.542 6.542 16 C -0.140 4.140 17 C -0.053 4.053 18 C -0.149 4.149 19 C -0.008 4.008 20 C -0.690 4.690 21 S 2.697 3.303 22 O -0.955 6.955 23 O -0.949 6.949 24 N -1.007 6.007 25 C 0.090 3.910 26 C 0.080 3.920 27 C 0.032 3.968 28 H 0.034 0.966 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.267 0.733 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.164 0.836 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.056 -4.792 24.466 24.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.129 3.871 3 H 0.083 0.917 4 C -0.570 4.570 5 H 0.097 0.903 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.713 3.287 9 H -0.203 1.203 10 H -0.187 1.187 11 H -0.220 1.220 12 N -0.309 5.309 13 C -0.072 4.072 14 C 0.335 3.665 15 O -0.421 6.421 16 C -0.144 4.144 17 C -0.071 4.071 18 C -0.168 4.168 19 C -0.027 4.027 20 C -0.777 4.777 21 S 2.787 3.213 22 O -0.945 6.945 23 O -0.940 6.940 24 N -0.846 5.846 25 C -0.055 4.055 26 C -0.065 4.065 27 C 0.012 3.988 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.181 0.819 36 H 0.156 0.844 37 H 0.158 0.842 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.189 -3.807 24.317 24.614 hybrid contribution -1.167 0.095 -0.888 1.469 sum -1.356 -3.712 23.429 23.760 Atomic orbital electron populations 1.22456 0.98910 1.01129 0.99481 1.19363 0.90210 0.95245 0.82330 0.91739 1.21119 1.33048 1.14416 0.88411 0.90314 1.24854 0.95606 0.96585 0.95570 1.69871 1.44943 1.40145 0.98025 0.86917 0.80391 0.83783 0.77654 1.20327 1.18710 1.22020 1.47769 1.48667 1.11803 1.22663 1.22231 1.02072 0.83117 0.99742 1.18130 0.79529 0.86861 0.82025 1.90750 1.61931 1.14420 1.74997 1.20305 1.03602 0.94245 0.96246 1.22829 0.91169 0.93795 0.99294 1.21298 1.00598 1.00771 0.94114 1.21050 0.91913 0.91797 0.97956 1.30894 1.19367 1.06708 1.20722 1.01915 0.72759 0.73701 0.72920 1.93568 1.54730 1.70592 1.75613 1.93600 1.83355 1.34398 1.82612 1.57332 1.46614 1.32278 1.48395 1.21566 1.03217 0.88782 0.91959 1.21709 0.92791 0.88591 1.03401 1.20990 0.87734 1.00386 0.89668 0.94665 0.92968 0.92475 0.92317 0.91806 0.91402 0.90629 0.81903 0.84390 0.84188 0.91322 0.90007 0.92186 0.92381 0.90379 0.89569 0.83282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 8.64 37.16 0.32 -3.05 16 2 C 0.23 5.42 2.22 -69.08 -0.15 5.26 16 3 H 0.06 1.70 5.98 -51.93 -0.31 1.39 16 4 C -0.53 -14.32 8.95 -34.44 -0.31 -14.63 16 5 H 0.08 2.26 7.78 -52.49 -0.41 1.85 16 6 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 7 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 8 Si 0.88 21.46 24.37 -169.99 -4.14 17.31 16 9 H -0.28 -6.39 6.87 56.52 0.39 -6.01 16 10 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 N -0.58 -11.55 2.75 -176.38 -0.49 -12.04 16 13 C 0.07 1.07 7.92 59.84 0.47 1.54 16 14 C 0.55 11.04 7.52 -12.33 -0.09 10.95 16 15 O -0.54 -12.89 15.88 5.32 0.08 -12.81 16 16 C -0.14 -2.23 5.57 -104.96 -0.58 -2.82 16 17 C -0.05 -0.67 7.61 -39.18 -0.30 -0.97 16 18 C -0.15 -1.53 10.03 -39.64 -0.40 -1.92 16 19 C -0.01 -0.08 9.52 -39.49 -0.38 -0.46 16 20 C -0.69 -8.48 5.97 -39.64 -0.24 -8.72 16 21 S 2.70 31.42 5.70 -107.50 -0.61 30.80 16 22 O -0.95 -12.48 16.43 -57.17 -0.94 -13.42 16 23 O -0.95 -13.94 15.88 -57.17 -0.91 -14.85 16 24 N -1.01 -8.45 3.58 -129.20 -0.46 -8.91 16 25 C 0.09 0.52 10.30 59.84 0.62 1.14 16 26 C 0.08 0.57 10.63 59.85 0.64 1.20 16 27 C 0.03 0.48 9.06 -39.19 -0.36 0.12 16 28 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 30 H 0.06 1.09 6.68 -51.93 -0.35 0.74 16 31 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.06 0.93 6.90 -51.93 -0.36 0.58 16 33 H 0.07 0.80 5.21 -51.93 -0.27 0.53 16 34 H 0.08 1.11 6.44 -51.93 -0.33 0.77 16 35 H 0.16 1.90 4.04 -52.49 -0.21 1.69 16 36 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 37 H 0.14 1.12 7.60 -52.49 -0.40 0.73 16 38 H 0.07 0.40 8.01 -51.93 -0.42 -0.02 16 39 H 0.08 0.30 7.80 -51.93 -0.40 -0.10 16 40 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.36 7.92 -51.93 -0.41 -0.05 16 43 H 0.09 0.69 7.02 -51.93 -0.36 0.32 16 44 H 0.15 2.27 7.34 -52.49 -0.39 1.88 16 LS Contribution 361.24 15.07 5.44 5.44 Total: -1.00 -36.35 361.24 -7.76 -44.11 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.66 Total: 0.25 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -0.85 Total: -10.28 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.17 Total: -46.57 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -1.76 Total: -41.07 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.14 Total: 17.31 kcal Atomic # 16 Polarization: 31.42 SS G_CDS: -0.61 Total: 30.80 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.35 -7.76 -44.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330574824.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.536 kcal (2) G-P(sol) polarization free energy of solvation -36.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds