Wall clock time and date at job start Sat Apr 11 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46501 * 109.47187 * 2 1 4 4 C 1.46490 * 120.00119 * 275.52709 * 3 2 1 5 5 C 1.50706 * 109.47318 * 275.00273 * 4 3 2 6 6 H 1.08004 * 119.99731 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00052 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99909 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99649 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47406 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.46951 * 120.00265 * 9 7 5 12 12 H 1.48503 * 109.46979 * 239.99869 * 9 7 5 13 13 S 1.65600 * 119.99775 * 95.52869 * 3 2 1 14 14 O 1.42099 * 106.40574 * 337.26202 * 13 3 2 15 15 O 1.42099 * 106.40063 * 204.33923 * 13 3 2 16 16 N 1.65606 * 107.21915 * 90.80134 * 13 3 2 17 17 C 1.46500 * 119.99885 * 67.92318 * 16 13 3 18 18 H 1.09005 * 109.69737 * 337.93976 * 17 16 13 19 19 C 1.53407 * 109.69961 * 98.50383 * 17 16 13 20 20 O 1.42820 * 108.38018 * 184.41677 * 19 17 16 21 21 C 1.35844 * 117.86273 * 310.83443 * 20 19 17 22 22 C 1.39149 * 118.49616 * 196.99381 * 21 20 19 23 23 C 1.37974 * 120.21078 * 180.51317 * 22 21 20 24 24 C 1.38283 * 119.95713 * 359.49149 * 23 22 21 25 25 C 1.38103 * 119.98914 * 0.52419 * 24 23 22 26 26 C 1.38376 * 121.80887 * 17.19097 * 21 20 19 27 27 C 1.50773 * 121.40052 * 359.53367 * 26 21 20 28 28 H 1.09006 * 109.46800 * 305.02189 * 1 2 3 29 29 H 1.08999 * 109.46758 * 65.01825 * 1 2 3 30 30 H 1.08991 * 109.47001 * 185.02391 * 1 2 3 31 31 H 1.08999 * 109.46653 * 239.99879 * 2 1 3 32 32 H 1.09002 * 109.46689 * 120.00506 * 2 1 3 33 33 H 1.09003 * 109.47535 * 35.00141 * 4 3 2 34 34 H 1.09003 * 109.47414 * 155.00191 * 4 3 2 35 35 H 0.97004 * 119.99357 * 180.02562 * 8 7 5 36 36 H 0.97000 * 119.99629 * 247.93175 * 16 13 3 37 37 H 1.08997 * 109.67729 * 64.69353 * 19 17 16 38 38 H 1.09002 * 109.71254 * 304.16109 * 19 17 16 39 39 H 1.08000 * 119.89651 * 0.24341 * 22 21 20 40 40 H 1.08002 * 120.01691 * 179.79181 * 23 22 21 41 41 H 1.08012 * 120.00599 * 180.19699 * 24 23 22 42 42 H 1.08001 * 119.84290 * 179.67514 * 25 24 23 43 43 H 1.08997 * 109.43337 * 257.75320 * 27 26 21 44 44 H 1.09005 * 109.39568 * 137.86507 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1474 2.1125 -1.2627 5 6 3.4785 1.7945 -1.8938 6 1 4.1604 1.1158 -1.4030 7 6 3.8258 2.3700 -3.0976 8 7 2.9957 3.1968 -3.6949 9 14 5.4755 1.9752 -3.8801 10 1 6.2195 1.0255 -3.0142 11 1 5.2562 1.3616 -5.2145 12 1 6.2624 3.2252 -4.0334 13 16 2.4247 2.1157 1.4275 14 8 1.7229 1.4219 2.4499 15 8 2.2981 3.5142 1.2094 16 7 4.0346 1.8268 1.6867 17 6 5.0385 2.4360 0.8107 18 1 4.5813 2.7023 -0.1424 19 6 5.6128 3.6925 1.4777 20 8 6.5094 4.3197 0.5600 21 6 7.4488 3.5438 -0.0406 22 6 8.5377 4.1662 -0.6431 23 6 9.5073 3.4128 -1.2725 24 6 9.4032 2.0341 -1.2963 25 6 8.3236 1.4129 -0.6997 26 6 7.3454 2.1642 -0.0695 27 6 6.1852 1.4497 0.5760 28 1 -0.3633 0.5898 0.8416 29 1 -0.3633 0.4340 -0.9315 30 1 -0.3633 -1.0236 0.0900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.3450 1.8157 -1.9382 34 1 2.0830 3.1836 -1.0706 35 1 3.2399 3.6013 -4.5421 36 1 4.3129 1.2541 2.4185 37 1 6.1505 3.4137 2.3839 38 1 4.8035 4.3786 1.7276 39 1 8.6221 5.2427 -0.6219 40 1 10.3494 3.8993 -1.7420 41 1 10.1634 1.4434 -1.7860 42 1 8.2420 0.3363 -0.7242 43 1 6.5035 1.0297 1.5302 44 1 5.8452 0.6469 -0.0783 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336901773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:42 Heat of formation + Delta-G solvation = -93.997333 kcal Electronic energy + Delta-G solvation = -29597.470071 eV Core-core repulsion = 25641.518464 eV Total energy + Delta-G solvation = -3955.951607 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.48300 -37.41695 -36.72654 -36.14398 -35.60781 -35.28221 -32.77930 -32.16165 -30.11758 -29.99385 -28.81273 -26.68750 -25.57787 -23.19128 -23.10163 -22.25435 -21.78579 -20.04021 -18.96165 -17.66461 -17.27670 -16.88096 -16.67303 -16.33095 -15.67320 -15.47330 -15.17304 -14.64388 -14.29485 -14.16393 -13.89027 -13.66705 -13.40313 -13.18021 -13.07977 -12.96140 -12.77026 -12.12686 -12.05589 -11.81541 -11.76509 -11.63406 -11.52778 -11.41106 -11.32789 -11.22795 -11.05816 -10.94269 -10.64101 -10.54362 -10.49025 -10.28973 -10.08233 -9.76882 -9.21382 -8.61302 -8.54691 -8.12774 -7.92859 -6.17640 -4.25043 1.20518 1.48260 1.61573 3.23389 3.31076 3.34280 3.36407 3.62565 3.91830 4.08172 4.33122 4.80426 4.85779 4.88045 5.03981 5.09859 5.16674 5.23089 5.36666 5.38486 5.49782 5.56923 5.63854 5.67890 5.72916 5.79575 5.85462 5.95696 6.07593 6.13166 6.22740 6.29118 6.43715 6.49134 6.61775 6.62663 6.64373 6.68210 6.95155 7.18775 7.32102 7.40867 7.60272 7.68355 7.79253 8.07379 8.79684 9.41943 10.89577 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012016 B = 0.005726 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.688912 B = 4888.660288 C = 6143.786129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.131 3.869 3 N -0.991 5.991 4 C 0.241 3.759 5 C -0.548 4.548 6 H 0.066 0.934 7 C 0.073 3.927 8 N -0.882 5.882 9 Si 0.880 3.120 10 H -0.264 1.264 11 H -0.285 1.285 12 H -0.279 1.279 13 S 2.783 3.217 14 O -0.998 6.998 15 O -0.976 6.976 16 N -1.119 6.119 17 C 0.105 3.895 18 H 0.145 0.855 19 C 0.049 3.951 20 O -0.306 6.306 21 C 0.136 3.864 22 C -0.151 4.151 23 C -0.092 4.092 24 C -0.159 4.159 25 C -0.081 4.081 26 C -0.148 4.148 27 C -0.079 4.079 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.040 0.960 34 H 0.051 0.949 35 H 0.265 0.735 36 H 0.407 0.593 37 H 0.060 0.940 38 H 0.116 0.884 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.076 0.924 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.122 -4.612 7.792 12.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.004 3.996 3 N -0.833 5.833 4 C 0.119 3.881 5 C -0.587 4.587 6 H 0.085 0.915 7 C -0.132 4.132 8 N -0.519 5.519 9 Si 0.707 3.293 10 H -0.188 1.188 11 H -0.211 1.211 12 H -0.205 1.205 13 S 2.791 3.209 14 O -0.982 6.982 15 O -0.960 6.960 16 N -0.876 5.876 17 C -0.002 4.002 18 H 0.163 0.837 19 C -0.028 4.028 20 O -0.218 6.218 21 C 0.091 3.909 22 C -0.170 4.170 23 C -0.110 4.110 24 C -0.177 4.177 25 C -0.099 4.099 26 C -0.150 4.150 27 C -0.117 4.117 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.239 0.761 37 H 0.079 0.921 38 H 0.134 0.866 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.094 0.906 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.402 -3.639 8.016 11.501 hybrid contribution 1.245 -0.937 -0.583 1.663 sum 8.646 -4.576 7.433 12.286 Atomic orbital electron populations 1.22196 0.96895 1.01343 1.02379 1.20981 0.93694 0.82780 1.02142 1.57705 1.78345 1.22968 1.24266 1.19255 0.97509 0.92212 0.79087 1.21581 1.02516 1.28349 1.06235 0.91547 1.24907 0.96950 0.94552 0.96793 1.69934 1.35741 1.29122 1.17111 0.86685 0.84173 0.78957 0.79446 1.18837 1.21100 1.20489 1.01873 0.72527 0.73805 0.72727 1.93554 1.71246 1.75728 1.57713 1.93592 1.85533 1.30998 1.85837 1.56054 1.25562 1.63990 1.41993 1.21813 0.90108 0.91910 0.96382 0.83742 1.23532 0.92466 0.96426 0.90374 1.86043 1.42658 1.36402 1.56731 1.18778 0.88790 0.89256 0.94106 1.20571 0.93319 1.00500 1.02622 1.20864 0.98201 0.93856 0.98089 1.20949 0.99269 0.94785 1.02729 1.20869 0.93229 0.99604 0.96234 1.19773 0.98343 0.92528 1.04363 1.20754 0.91855 0.98383 1.00732 0.92734 0.92084 0.92346 0.90161 0.91877 0.94211 0.93094 0.92525 0.76131 0.92133 0.86588 0.85327 0.85722 0.86171 0.85993 0.90599 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 10.23 37.16 0.38 -2.21 16 2 C 0.13 2.17 6.07 -4.04 -0.02 2.14 16 3 N -0.99 -19.41 2.83 -115.66 -0.33 -19.74 16 4 C 0.24 5.71 5.30 -5.20 -0.03 5.69 16 5 C -0.55 -13.49 7.02 -34.44 -0.24 -13.73 16 6 H 0.07 1.55 6.36 -52.48 -0.33 1.22 16 7 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 8 N -0.88 -24.65 13.29 55.43 0.74 -23.91 16 9 Si 0.88 20.51 29.54 -169.99 -5.02 15.49 16 10 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 S 2.78 52.53 6.03 -107.50 -0.65 51.89 16 14 O -1.00 -19.38 17.07 -57.17 -0.98 -20.36 16 15 O -0.98 -21.68 16.32 -57.17 -0.93 -22.62 16 16 N -1.12 -17.21 5.54 -4.68 -0.03 -17.23 16 17 C 0.11 1.79 2.52 -67.68 -0.17 1.62 16 18 H 0.15 3.04 4.87 -51.93 -0.25 2.79 16 19 C 0.05 0.79 6.65 37.37 0.25 1.04 16 20 O -0.31 -5.51 10.27 -19.25 -0.20 -5.71 16 21 C 0.14 2.35 6.47 -39.19 -0.25 2.10 16 22 C -0.15 -2.33 9.94 -39.34 -0.39 -2.72 16 23 C -0.09 -1.25 10.04 -39.66 -0.40 -1.64 16 24 C -0.16 -2.16 10.04 -39.61 -0.40 -2.55 16 25 C -0.08 -1.20 9.67 -39.53 -0.38 -1.58 16 26 C -0.15 -2.43 5.75 -104.44 -0.60 -3.03 16 27 C -0.08 -1.19 5.35 -27.81 -0.15 -1.34 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.32 8.11 -51.93 -0.42 0.90 16 32 H 0.06 0.93 7.57 -51.93 -0.39 0.53 16 33 H 0.04 0.99 8.11 -51.93 -0.42 0.57 16 34 H 0.05 1.34 6.92 -51.93 -0.36 0.98 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.41 4.87 8.85 -34.47 -0.31 4.57 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.12 1.91 8.06 -51.93 -0.42 1.49 16 39 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 41 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 42 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 43 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 44 H 0.09 1.46 7.39 -51.93 -0.38 1.08 16 LS Contribution 370.19 15.07 5.58 5.58 Total: -1.00 -31.20 370.19 -10.55 -41.74 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -6.23 Total: 9.28 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -2.50 Total: -14.41 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: 0.38 Total: -60.88 kcal Atomic # 8 Polarization: -46.58 SS G_CDS: -2.11 Total: -48.68 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 52.53 SS G_CDS: -0.65 Total: 51.89 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.20 -10.55 -41.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336901773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.254 kcal (2) G-P(sol) polarization free energy of solvation -31.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds