Wall clock time and date at job start Sat Apr 11 2020 05:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47133 * 2 1 4 4 C 1.46492 * 120.00328 * 282.84694 * 3 2 1 5 5 C 1.50698 * 109.47050 * 274.99706 * 4 3 2 6 6 H 1.07998 * 120.00238 * 0.02562 * 5 4 3 7 7 C 1.37885 * 119.99736 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00294 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99535 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47599 * 60.00194 * 9 7 5 11 11 H 1.48499 * 109.47196 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47421 * 299.99798 * 9 7 5 13 13 S 1.65604 * 119.99551 * 102.84158 * 3 2 1 14 14 O 1.42104 * 106.40407 * 14.22347 * 13 3 2 15 15 O 1.42104 * 106.39874 * 147.13811 * 13 3 2 16 16 N 1.65597 * 107.22045 * 260.67787 * 13 3 2 17 17 C 1.46500 * 119.99917 * 68.53290 * 16 13 3 18 18 H 1.09005 * 109.69363 * 5.92118 * 17 16 13 19 19 C 1.53406 * 109.69878 * 245.32225 * 17 16 13 20 20 O 1.42830 * 108.37308 * 175.58811 * 19 17 16 21 21 C 1.35839 * 117.85713 * 49.20164 * 20 19 17 22 22 C 1.39154 * 118.49349 * 163.02563 * 21 20 19 23 23 C 1.37969 * 120.21263 * 179.60182 * 22 21 20 24 24 C 1.38287 * 119.95806 * 359.97438 * 23 22 21 25 25 C 1.38106 * 119.98533 * 0.07646 * 24 23 22 26 26 C 1.38377 * 121.80917 * 342.73926 * 21 20 19 27 27 C 1.50766 * 121.39997 * 0.52216 * 26 21 20 28 28 H 1.08998 * 109.46865 * 53.21428 * 1 2 3 29 29 H 1.09006 * 109.46900 * 173.21205 * 1 2 3 30 30 H 1.09001 * 109.47119 * 293.21019 * 1 2 3 31 31 H 1.08997 * 109.47123 * 240.00396 * 2 1 3 32 32 H 1.08999 * 109.46965 * 120.00121 * 2 1 3 33 33 H 1.09009 * 109.47027 * 34.99935 * 4 3 2 34 34 H 1.09004 * 109.47372 * 154.99828 * 4 3 2 35 35 H 0.96991 * 119.99788 * 179.97438 * 8 7 5 36 36 H 0.97001 * 120.00596 * 248.53013 * 16 13 3 37 37 H 1.09000 * 109.67662 * 295.30367 * 19 17 16 38 38 H 1.08997 * 109.68402 * 55.86642 * 19 17 16 39 39 H 1.07996 * 119.89363 * 359.55263 * 22 21 20 40 40 H 1.08004 * 120.01837 * 180.02562 * 23 22 21 41 41 H 1.07999 * 120.00987 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.83776 * 179.97438 * 25 24 23 43 43 H 1.09002 * 109.43493 * 222.10704 * 27 26 21 44 44 H 1.08995 * 109.43595 * 102.23791 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9966 2.1659 -1.2369 5 6 3.2415 1.8785 -2.0360 6 1 3.9753 1.1808 -1.6604 7 6 3.4431 2.5055 -3.2473 8 7 2.5489 3.3540 -3.7055 9 14 4.9859 2.1487 -4.2382 10 1 5.0377 0.7022 -4.5701 11 1 4.9634 2.9432 -5.4926 12 1 6.1830 2.5166 -3.4402 13 16 2.5949 2.0555 1.3984 14 8 2.7994 0.9821 2.3069 15 8 3.6251 2.9559 1.0146 16 7 1.3779 2.9811 2.0344 17 6 0.1745 2.3406 2.5709 18 1 0.3004 1.2579 2.5640 19 6 -1.0406 2.7262 1.7176 20 8 -2.1764 2.0074 2.2008 21 6 -2.4201 2.0296 3.5370 22 6 -3.6825 1.6559 3.9878 23 6 -3.9660 1.6575 5.3380 24 6 -2.9935 2.0308 6.2475 25 6 -1.7399 2.4033 5.8035 26 6 -1.4499 2.4055 4.4492 27 6 -0.0714 2.8223 4.0029 28 1 -0.3633 0.6154 -0.8230 29 1 -0.3633 -1.0205 -0.1215 30 1 -0.3633 0.4050 0.9445 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.1181 1.8959 -1.8230 34 1 1.9585 3.2276 -0.9930 35 1 2.6910 3.7953 -4.5575 36 1 1.4618 3.9473 2.0517 37 1 -1.2220 3.7978 1.8001 38 1 -0.8560 2.4636 0.6759 39 1 -4.4429 1.3645 3.2784 40 1 -4.9467 1.3665 5.6845 41 1 -3.2144 2.0320 7.3046 42 1 -0.9823 2.6948 6.5158 43 1 0.6731 2.3823 4.6665 44 1 0.0084 3.9087 4.0390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336901774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:46 Heat of formation + Delta-G solvation = -91.594169 kcal Electronic energy + Delta-G solvation = -28684.309700 eV Core-core repulsion = 24728.462302 eV Total energy + Delta-G solvation = -3955.847398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.88396 -37.79748 -36.76952 -36.13084 -35.92348 -35.25806 -32.68838 -32.48676 -30.49720 -29.99666 -29.09569 -26.68424 -25.94488 -23.51074 -23.18650 -22.60180 -21.72470 -20.42128 -18.99909 -17.98451 -17.50203 -16.99326 -16.73289 -16.32785 -16.10997 -15.71967 -15.33699 -14.69174 -14.64694 -14.34762 -14.03395 -13.89357 -13.62382 -13.43513 -13.42018 -13.14544 -12.93562 -12.16828 -12.09325 -12.03144 -11.88457 -11.69555 -11.57697 -11.55544 -11.48756 -11.38817 -11.03451 -10.95845 -10.89463 -10.80689 -10.52537 -10.40824 -10.02727 -9.81133 -9.49275 -8.98988 -8.46368 -8.31260 -8.13593 -6.08799 -4.12161 1.10150 1.13072 1.24250 3.06353 3.32862 3.36285 3.40265 3.43560 3.57927 4.01076 4.39679 4.42454 4.46264 4.58289 4.64564 4.84384 4.89695 4.94942 5.15033 5.25671 5.26920 5.29150 5.34437 5.43122 5.47595 5.55362 5.72106 5.74608 5.75929 5.83550 5.89521 6.05576 6.10020 6.26505 6.30717 6.33098 6.57472 6.60039 6.61259 6.99593 7.18577 7.29732 7.36765 7.57439 7.89218 8.17903 8.90044 9.53095 10.99785 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022295 B = 0.003219 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.579033 B = 8696.129175 C = 9154.414571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.114 3.886 3 N -0.991 5.991 4 C 0.259 3.741 5 C -0.527 4.527 6 H 0.060 0.940 7 C 0.062 3.938 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.275 1.275 13 S 2.777 3.223 14 O -0.996 6.996 15 O -0.960 6.960 16 N -1.123 6.123 17 C 0.122 3.878 18 H 0.106 0.894 19 C 0.046 3.954 20 O -0.308 6.308 21 C 0.131 3.869 22 C -0.148 4.148 23 C -0.090 4.090 24 C -0.155 4.155 25 C -0.083 4.083 26 C -0.155 4.155 27 C -0.087 4.087 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.033 0.967 35 H 0.264 0.736 36 H 0.415 0.585 37 H 0.071 0.929 38 H 0.122 0.878 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.090 0.910 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.918 -1.727 16.592 21.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.012 4.012 3 N -0.833 5.833 4 C 0.137 3.863 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.140 4.140 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.200 1.200 13 S 2.785 3.215 14 O -0.980 6.980 15 O -0.943 6.943 16 N -0.880 5.880 17 C 0.014 3.986 18 H 0.124 0.876 19 C -0.031 4.031 20 O -0.220 6.220 21 C 0.086 3.914 22 C -0.167 4.167 23 C -0.108 4.108 24 C -0.173 4.173 25 C -0.101 4.101 26 C -0.157 4.157 27 C -0.126 4.126 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.248 0.752 37 H 0.089 0.911 38 H 0.140 0.860 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.109 0.891 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.193 -2.018 16.630 20.720 hybrid contribution 0.641 0.547 -0.765 1.138 sum -11.552 -1.471 15.865 19.680 Atomic orbital electron populations 1.22360 0.96950 1.02071 1.02013 1.21196 0.93483 0.83035 1.03487 1.57728 1.79595 1.20962 1.25033 1.19006 0.97989 0.89579 0.79702 1.21444 1.05477 1.25793 1.03912 0.92165 1.24919 0.96776 0.94854 0.97448 1.69896 1.34859 1.28252 1.20630 0.86580 0.83577 0.78298 0.79136 1.20191 1.21222 1.20003 1.02127 0.73355 0.73171 0.72888 1.93530 1.85008 1.55496 1.63929 1.93662 1.52639 1.65365 1.82653 1.56293 1.34002 1.20294 1.77443 1.21273 0.85325 0.98883 0.93155 0.87637 1.23613 0.83237 0.96602 0.99662 1.86063 1.46961 1.69505 1.19494 1.18803 0.93151 0.96650 0.82836 1.20612 0.94586 1.05293 0.96203 1.20925 0.99328 0.98365 0.92185 1.21003 0.93728 1.02873 0.99680 1.20905 0.96984 0.98154 0.94081 1.19820 0.95406 1.06475 0.93976 1.20881 0.93502 1.02091 0.96110 0.91619 0.92066 0.93099 0.89911 0.90314 0.94465 0.94918 0.92647 0.75214 0.91082 0.85987 0.85169 0.85533 0.85963 0.85771 0.89108 0.89645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 9.57 37.16 0.36 -2.12 16 2 C 0.11 1.93 6.45 -4.04 -0.03 1.91 16 3 N -0.99 -19.46 2.85 -115.67 -0.33 -19.79 16 4 C 0.26 6.14 5.04 -5.20 -0.03 6.11 16 5 C -0.53 -14.41 9.38 -34.44 -0.32 -14.73 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -25.59 13.29 55.43 0.74 -24.85 16 9 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 13 S 2.78 52.51 6.00 -107.50 -0.65 51.86 16 14 O -1.00 -19.78 15.83 -57.17 -0.90 -20.68 16 15 O -0.96 -22.19 17.46 -57.17 -1.00 -23.18 16 16 N -1.12 -15.65 5.47 -4.68 -0.03 -15.67 16 17 C 0.12 1.54 2.71 -67.68 -0.18 1.35 16 18 H 0.11 1.44 6.13 -51.93 -0.32 1.12 16 19 C 0.05 0.55 5.69 37.37 0.21 0.76 16 20 O -0.31 -3.91 10.27 -19.24 -0.20 -4.10 16 21 C 0.13 1.56 6.47 -39.19 -0.25 1.31 16 22 C -0.15 -1.53 9.94 -39.34 -0.39 -1.93 16 23 C -0.09 -0.78 10.04 -39.66 -0.40 -1.18 16 24 C -0.15 -1.33 10.04 -39.61 -0.40 -1.73 16 25 C -0.08 -0.79 9.67 -39.53 -0.38 -1.18 16 26 C -0.16 -1.73 5.75 -104.44 -0.60 -2.33 16 27 C -0.09 -0.94 5.48 -27.81 -0.15 -1.10 16 28 H 0.06 0.98 7.39 -51.93 -0.38 0.60 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.67 4.75 -51.93 -0.25 0.43 16 31 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 32 H 0.08 1.27 6.71 -51.93 -0.35 0.93 16 33 H 0.04 0.89 7.37 -51.92 -0.38 0.51 16 34 H 0.03 0.81 7.86 -51.93 -0.41 0.41 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.41 4.93 8.96 -34.47 -0.31 4.62 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.12 1.53 7.12 -51.93 -0.37 1.16 16 39 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 41 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 369.08 15.07 5.56 5.56 Total: -1.00 -33.19 369.08 -10.60 -43.79 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.12 Total: 3.67 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -2.66 Total: -13.21 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: 0.38 Total: -60.32 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: -2.10 Total: -47.97 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 52.51 SS G_CDS: -0.65 Total: 51.86 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.19 -10.60 -43.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336901774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.801 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds