Wall clock time and date at job start Sat Apr 11 2020 05:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46510 * 109.46896 * 2 1 4 4 C 1.46503 * 119.99818 * 276.04734 * 3 2 1 5 5 C 1.50694 * 109.47042 * 274.99814 * 4 3 2 6 6 H 1.07997 * 120.00134 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99907 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99867 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00192 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47433 * 89.99547 * 9 7 5 11 11 H 1.48492 * 109.47106 * 210.00220 * 9 7 5 12 12 H 1.48504 * 109.46863 * 329.99912 * 9 7 5 13 13 S 1.65598 * 119.99803 * 96.04855 * 3 2 1 14 14 O 1.42098 * 106.40182 * 162.35464 * 13 3 2 15 15 O 1.42099 * 106.40319 * 29.43832 * 13 3 2 16 16 N 1.65597 * 107.21982 * 275.89443 * 13 3 2 17 17 C 1.46506 * 120.00089 * 294.72824 * 16 13 3 18 18 H 1.08998 * 110.26417 * 20.15547 * 17 16 13 19 19 C 1.54347 * 110.30195 * 142.22752 * 17 16 13 20 20 C 1.54349 * 102.38100 * 145.36637 * 19 17 16 21 21 C 1.51361 * 105.24936 * 333.61313 * 20 19 17 22 22 C 1.38400 * 109.64877 * 17.22759 * 21 20 19 23 23 C 1.38507 * 119.84373 * 180.02562 * 22 21 20 24 24 C 1.38171 * 120.33361 * 359.97438 * 23 22 21 25 25 C 1.38126 * 119.99876 * 359.97438 * 24 23 22 26 26 C 1.38646 * 119.86618 * 0.02562 * 25 24 23 27 27 O 1.35905 * 119.94577 * 180.02562 * 26 25 24 28 28 H 1.08999 * 109.47308 * 304.81652 * 1 2 3 29 29 H 1.09002 * 109.46754 * 64.81842 * 1 2 3 30 30 H 1.08996 * 109.46820 * 184.81701 * 1 2 3 31 31 H 1.08998 * 109.47635 * 240.00369 * 2 1 3 32 32 H 1.08996 * 109.47234 * 119.99825 * 2 1 3 33 33 H 1.08998 * 109.47138 * 35.00206 * 4 3 2 34 34 H 1.08998 * 109.46683 * 155.00010 * 4 3 2 35 35 H 0.96993 * 119.99931 * 180.02562 * 8 7 5 36 36 H 0.97004 * 120.00245 * 114.72817 * 16 13 3 37 37 H 1.08994 * 110.82449 * 27.14132 * 19 17 16 38 38 H 1.09002 * 110.82217 * 263.58918 * 19 17 16 39 39 H 1.08997 * 110.30191 * 92.58687 * 20 19 17 40 40 H 1.09000 * 110.30054 * 214.64100 * 20 19 17 41 41 H 1.08000 * 119.83226 * 179.97438 * 23 22 21 42 42 H 1.07997 * 120.00533 * 179.97438 * 24 23 22 43 43 H 1.07995 * 120.06752 * 180.02562 * 25 24 23 44 44 H 0.96699 * 114.00474 * 90.00436 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1364 2.1165 -1.2617 5 6 3.4621 1.8005 -1.9050 6 1 4.1478 1.1199 -1.4225 7 6 3.7995 2.3804 -3.1095 8 7 2.9646 3.2097 -3.6968 9 14 5.4424 1.9883 -3.9073 10 1 5.2909 0.8110 -4.7997 11 1 5.8981 3.1568 -4.7022 12 1 6.4443 1.6852 -2.8539 13 16 2.4368 2.1116 1.4262 14 8 3.2360 3.2350 1.0823 15 8 2.8826 1.0763 2.2914 16 7 1.0467 2.7137 2.0949 17 6 0.3162 3.7903 1.4212 18 1 0.5934 3.8329 0.3679 19 6 -1.2056 3.5774 1.5664 20 6 -1.7336 5.0240 1.6708 21 6 -0.5828 5.8280 2.2365 22 6 0.5963 5.1179 2.0922 23 6 1.7880 5.6618 2.5423 24 6 1.8057 6.9101 3.1343 25 6 0.6312 7.6224 3.2793 26 6 -0.5640 7.0819 2.8302 27 8 -1.7205 7.7816 2.9715 28 1 -0.3634 0.5867 0.8437 29 1 -0.3633 0.4373 -0.9300 30 1 -0.3633 -1.0240 0.0863 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.3283 1.8216 -1.9310 34 1 2.0736 3.1868 -1.0657 35 1 3.2018 3.6173 -4.5443 36 1 0.7159 2.3537 2.9328 37 1 -1.4336 3.0153 2.4720 38 1 -1.6127 3.0788 0.6867 39 1 -2.0081 5.3985 0.6846 40 1 -2.5909 5.0661 2.3427 41 1 2.7080 5.1073 2.4299 42 1 2.7378 7.3289 3.4838 43 1 0.6438 8.5984 3.7415 44 1 -1.9266 8.3565 2.2217 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337092619.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:15 Heat of formation + Delta-G solvation = -96.521693 kcal Electronic energy + Delta-G solvation = -28798.158306 eV Core-core repulsion = 24842.097235 eV Total energy + Delta-G solvation = -3956.061071 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -40.44711 -37.69031 -36.61715 -36.09710 -35.68098 -35.17702 -33.23278 -32.68243 -30.02081 -29.71086 -28.81001 -26.63291 -26.19452 -23.16666 -22.67674 -21.74776 -21.15108 -20.95390 -18.92788 -18.25598 -17.41177 -16.71275 -16.39901 -16.25114 -15.75936 -15.61823 -15.30735 -14.95715 -14.50167 -14.24896 -13.86332 -13.78619 -13.35212 -13.10318 -12.94715 -12.48230 -12.40849 -12.12032 -12.09604 -12.01845 -11.92915 -11.70088 -11.47209 -11.37380 -11.21672 -11.15112 -11.01384 -10.91812 -10.89360 -10.62749 -10.49626 -10.43249 -10.01769 -9.78162 -9.40088 -8.62513 -8.50582 -8.45947 -8.10904 -6.08683 -4.12399 1.12558 1.30288 1.36844 3.30066 3.36777 3.41897 3.46605 3.64296 4.07881 4.20434 4.35020 4.43382 4.54548 4.90070 4.94205 5.04150 5.11328 5.22461 5.25833 5.32546 5.42563 5.51088 5.55527 5.64967 5.71042 5.74235 5.81008 5.87036 5.97249 5.99476 6.02593 6.21347 6.27613 6.38402 6.52143 6.55927 6.61484 6.64871 6.83972 7.10835 7.23934 7.39472 7.58896 7.60939 7.89070 8.18596 8.90027 9.53073 10.99884 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012404 B = 0.004099 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.836636 B = 6829.186244 C = 7521.124714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.118 3.882 3 N -0.991 5.991 4 C 0.256 3.744 5 C -0.530 4.530 6 H 0.060 0.940 7 C 0.064 3.936 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 S 2.776 3.224 14 O -0.961 6.961 15 O -0.998 6.998 16 N -1.125 6.125 17 C 0.195 3.805 18 H 0.110 0.890 19 C -0.122 4.122 20 C -0.075 4.075 21 C -0.117 4.117 22 C -0.090 4.090 23 C -0.095 4.095 24 C -0.109 4.109 25 C -0.143 4.143 26 C 0.106 3.894 27 O -0.501 6.501 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.035 0.965 34 H 0.039 0.961 35 H 0.263 0.737 36 H 0.409 0.591 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.137 0.863 42 H 0.128 0.872 43 H 0.127 0.873 44 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.407 3.987 11.054 16.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.009 4.009 3 N -0.833 5.833 4 C 0.134 3.866 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.723 3.277 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.197 1.197 13 S 2.784 3.216 14 O -0.944 6.944 15 O -0.982 6.982 16 N -0.881 5.881 17 C 0.088 3.912 18 H 0.128 0.872 19 C -0.161 4.161 20 C -0.112 4.112 21 C -0.119 4.119 22 C -0.092 4.092 23 C -0.113 4.113 24 C -0.127 4.127 25 C -0.162 4.162 26 C 0.062 3.938 27 O -0.310 6.310 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.242 0.758 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.154 0.846 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -10.489 3.936 11.609 16.133 hybrid contribution 0.445 0.069 -0.839 0.952 sum -10.044 4.005 10.770 15.262 Atomic orbital electron populations 1.22259 0.97165 1.01300 1.02254 1.21129 0.93093 0.83184 1.03445 1.57708 1.80977 1.21417 1.23174 1.19069 0.97529 0.91001 0.78964 1.21481 1.02578 1.27394 1.05445 0.92205 1.24909 0.97242 0.94760 0.96950 1.69907 1.36011 1.29875 1.17604 0.86535 0.84006 0.77831 0.79326 1.20618 1.21074 1.19717 1.02107 0.73350 0.73414 0.72704 1.93614 1.65421 1.51974 1.83432 1.93538 1.79707 1.58147 1.66836 1.56372 1.47313 1.48731 1.35729 1.20220 0.92080 0.82477 0.96459 0.87229 1.22651 0.93483 0.96568 1.03397 1.20933 0.95964 0.93272 1.01078 1.20807 0.96392 0.95239 0.99425 1.20881 0.92986 0.96688 0.98692 1.21016 0.98304 0.95402 0.96581 1.20972 0.97795 0.94519 0.99408 1.21287 0.91725 1.00707 1.02436 1.17924 0.85414 0.90708 0.99765 1.84798 1.39008 1.60844 1.46369 0.93052 0.91985 0.92346 0.89756 0.90820 0.94690 0.94326 0.92704 0.75798 0.90165 0.89411 0.89867 0.90324 0.84556 0.85381 0.85495 0.75895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.23 37.16 0.38 -1.86 16 2 C 0.12 1.96 6.41 -4.04 -0.03 1.94 16 3 N -0.99 -19.57 2.83 -115.66 -0.33 -19.89 16 4 C 0.26 6.12 4.99 -5.20 -0.03 6.09 16 5 C -0.53 -14.50 9.38 -34.44 -0.32 -14.82 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 9 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 S 2.78 53.27 6.01 -107.50 -0.65 52.62 16 14 O -0.96 -21.85 15.21 -57.17 -0.87 -22.72 16 15 O -1.00 -20.65 16.82 -57.17 -0.96 -21.61 16 16 N -1.13 -16.13 5.54 -4.99 -0.03 -16.16 16 17 C 0.20 2.74 3.43 -68.04 -0.23 2.51 16 18 H 0.11 1.74 6.97 -51.93 -0.36 1.38 16 19 C -0.12 -1.29 6.77 -25.32 -0.17 -1.46 16 20 C -0.08 -0.79 6.70 -26.85 -0.18 -0.97 16 21 C -0.12 -1.52 6.11 -104.05 -0.64 -2.16 16 22 C -0.09 -1.33 5.80 -104.13 -0.60 -1.93 16 23 C -0.09 -1.46 10.00 -39.51 -0.39 -1.85 16 24 C -0.11 -1.41 10.04 -39.65 -0.40 -1.81 16 25 C -0.14 -1.72 9.98 -39.47 -0.39 -2.11 16 26 C 0.11 1.32 6.70 -39.24 -0.26 1.05 16 27 O -0.50 -5.27 13.45 -19.44 -0.26 -5.53 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.46 8.12 -51.93 -0.42 1.04 16 32 H 0.07 1.18 6.99 -51.93 -0.36 0.81 16 33 H 0.04 0.85 8.11 -51.93 -0.42 0.42 16 34 H 0.04 0.98 6.58 -51.93 -0.34 0.64 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.41 4.83 8.74 -34.47 -0.30 4.53 16 37 H 0.08 0.75 7.93 -51.93 -0.41 0.34 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.14 2.31 6.54 -52.49 -0.34 1.97 16 42 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 44 H 0.39 2.33 9.06 45.56 0.41 2.74 16 LS Contribution 376.13 15.07 5.67 5.67 Total: -1.00 -34.14 376.13 -10.56 -44.70 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -5.48 Total: 6.88 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -3.37 Total: -15.72 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.38 Total: -60.84 kcal Atomic # 8 Polarization: -47.77 SS G_CDS: -2.09 Total: -49.86 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 53.27 SS G_CDS: -0.65 Total: 52.62 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.14 -10.56 -44.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337092619.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.821 kcal (2) G-P(sol) polarization free energy of solvation -34.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds