Wall clock time and date at job start Sat Apr 11 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46510 * 109.46896 * 2 1 4 4 C 1.46503 * 119.99818 * 276.04734 * 3 2 1 5 5 C 1.50694 * 109.47042 * 274.99814 * 4 3 2 6 6 H 1.07997 * 120.00134 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99907 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99867 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00192 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47433 * 89.99547 * 9 7 5 11 11 H 1.48492 * 109.47106 * 210.00220 * 9 7 5 12 12 H 1.48504 * 109.46863 * 329.99912 * 9 7 5 13 13 S 1.65598 * 119.99803 * 96.04855 * 3 2 1 14 14 O 1.42098 * 106.40182 * 162.35464 * 13 3 2 15 15 O 1.42099 * 106.40319 * 29.43832 * 13 3 2 16 16 N 1.65597 * 107.21982 * 275.89443 * 13 3 2 17 17 C 1.46506 * 120.00089 * 294.72824 * 16 13 3 18 18 H 1.08998 * 110.26417 * 20.15547 * 17 16 13 19 19 C 1.54347 * 110.30195 * 142.22752 * 17 16 13 20 20 C 1.54349 * 102.38100 * 145.36637 * 19 17 16 21 21 C 1.51361 * 105.24936 * 333.61313 * 20 19 17 22 22 C 1.38400 * 109.64877 * 17.22759 * 21 20 19 23 23 C 1.38507 * 119.84373 * 180.02562 * 22 21 20 24 24 C 1.38171 * 120.33361 * 359.97438 * 23 22 21 25 25 C 1.38126 * 119.99876 * 359.97438 * 24 23 22 26 26 C 1.38646 * 119.86618 * 0.02562 * 25 24 23 27 27 O 1.35905 * 119.94577 * 180.02562 * 26 25 24 28 28 H 1.08999 * 109.47308 * 304.81652 * 1 2 3 29 29 H 1.09002 * 109.46754 * 64.81842 * 1 2 3 30 30 H 1.08996 * 109.46820 * 184.81701 * 1 2 3 31 31 H 1.08998 * 109.47635 * 240.00369 * 2 1 3 32 32 H 1.08996 * 109.47234 * 119.99825 * 2 1 3 33 33 H 1.08998 * 109.47138 * 35.00206 * 4 3 2 34 34 H 1.08998 * 109.46683 * 155.00010 * 4 3 2 35 35 H 0.96993 * 119.99931 * 180.02562 * 8 7 5 36 36 H 0.97004 * 120.00245 * 114.72817 * 16 13 3 37 37 H 1.08994 * 110.82449 * 27.14132 * 19 17 16 38 38 H 1.09002 * 110.82217 * 263.58918 * 19 17 16 39 39 H 1.08997 * 110.30191 * 92.58687 * 20 19 17 40 40 H 1.09000 * 110.30054 * 214.64100 * 20 19 17 41 41 H 1.08000 * 119.83226 * 179.97438 * 23 22 21 42 42 H 1.07997 * 120.00533 * 179.97438 * 24 23 22 43 43 H 1.07995 * 120.06752 * 180.02562 * 25 24 23 44 44 H 0.96699 * 114.00474 * 90.00436 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1364 2.1165 -1.2617 5 6 3.4621 1.8005 -1.9050 6 1 4.1478 1.1199 -1.4225 7 6 3.7995 2.3804 -3.1095 8 7 2.9646 3.2097 -3.6968 9 14 5.4424 1.9883 -3.9073 10 1 5.2909 0.8110 -4.7997 11 1 5.8981 3.1568 -4.7022 12 1 6.4443 1.6852 -2.8539 13 16 2.4368 2.1116 1.4262 14 8 3.2360 3.2350 1.0823 15 8 2.8826 1.0763 2.2914 16 7 1.0467 2.7137 2.0949 17 6 0.3162 3.7903 1.4212 18 1 0.5934 3.8329 0.3679 19 6 -1.2056 3.5774 1.5664 20 6 -1.7336 5.0240 1.6708 21 6 -0.5828 5.8280 2.2365 22 6 0.5963 5.1179 2.0922 23 6 1.7880 5.6618 2.5423 24 6 1.8057 6.9101 3.1343 25 6 0.6312 7.6224 3.2793 26 6 -0.5640 7.0819 2.8302 27 8 -1.7205 7.7816 2.9715 28 1 -0.3634 0.5867 0.8437 29 1 -0.3633 0.4373 -0.9300 30 1 -0.3633 -1.0240 0.0863 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.3283 1.8216 -1.9310 34 1 2.0736 3.1868 -1.0657 35 1 3.2018 3.6173 -4.5443 36 1 0.7159 2.3537 2.9328 37 1 -1.4336 3.0153 2.4720 38 1 -1.6127 3.0788 0.6867 39 1 -2.0081 5.3985 0.6846 40 1 -2.5909 5.0661 2.3427 41 1 2.7080 5.1073 2.4299 42 1 2.7378 7.3289 3.4838 43 1 0.6438 8.5984 3.7415 44 1 -1.9266 8.3565 2.2217 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337092619.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:11 Heat of formation + Delta-G solvation = -122.058777 kcal Electronic energy + Delta-G solvation = -28799.265677 eV Core-core repulsion = 24842.097235 eV Total energy + Delta-G solvation = -3957.168442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 4.03 seconds Orbital eigenvalues (eV) -41.41919 -38.65316 -38.22716 -37.67193 -36.85911 -36.66734 -34.71745 -34.32554 -31.51693 -30.71389 -29.75733 -28.48999 -27.23432 -24.93772 -23.62311 -23.26500 -22.15356 -21.92833 -20.36926 -19.27470 -19.01434 -18.28445 -18.16371 -17.58809 -16.97523 -16.75332 -16.52133 -16.24703 -15.87733 -15.48155 -15.31410 -14.83730 -14.67524 -14.62129 -14.07076 -13.86402 -13.69227 -13.57196 -13.37878 -13.34813 -13.13613 -13.03191 -12.99479 -12.86872 -12.73387 -12.66282 -12.37627 -12.28300 -12.17544 -12.11471 -11.83538 -11.72815 -11.61941 -11.51227 -10.65949 -10.52550 -9.80897 -9.62630 -9.48759 -8.20254 -6.31251 -0.35995 0.28688 0.32088 1.37834 1.40196 1.50285 2.03249 2.39799 2.59543 2.67153 3.11142 3.31236 3.36962 3.45497 3.58125 3.93167 4.00646 4.09742 4.16562 4.22697 4.29288 4.49199 4.52511 4.56649 4.59732 4.74875 4.81338 4.88370 4.98773 5.05765 5.06498 5.16177 5.18212 5.19887 5.28096 5.41258 5.44838 5.49527 5.53837 5.60841 5.72674 5.87968 5.91303 6.12627 6.16897 6.76924 6.88061 7.37463 8.87069 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012404 B = 0.004099 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.836636 B = 6829.186244 C = 7521.124714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.108 3.892 3 N -0.994 5.994 4 C 0.276 3.724 5 C -0.551 4.551 6 H 0.049 0.951 7 C 0.017 3.983 8 N -0.921 5.921 9 Si 0.951 3.049 10 H -0.265 1.265 11 H -0.279 1.279 12 H -0.276 1.276 13 S 2.790 3.210 14 O -1.003 7.003 15 O -1.015 7.015 16 N -1.104 6.104 17 C 0.189 3.811 18 H 0.084 0.916 19 C -0.113 4.113 20 C -0.070 4.070 21 C -0.123 4.123 22 C -0.112 4.112 23 C -0.127 4.127 24 C -0.113 4.113 25 C -0.142 4.142 26 C 0.109 3.891 27 O -0.502 6.502 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.031 0.969 34 H 0.018 0.982 35 H 0.267 0.733 36 H 0.424 0.576 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.144 0.856 43 H 0.153 0.847 44 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.433 4.127 11.735 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.017 4.017 3 N -0.836 5.836 4 C 0.152 3.848 5 C -0.590 4.590 6 H 0.067 0.933 7 C -0.183 4.183 8 N -0.561 5.561 9 Si 0.776 3.224 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.201 1.201 13 S 2.799 3.201 14 O -0.986 6.986 15 O -0.999 6.999 16 N -0.865 5.865 17 C 0.082 3.918 18 H 0.102 0.898 19 C -0.152 4.152 20 C -0.108 4.108 21 C -0.124 4.124 22 C -0.114 4.114 23 C -0.146 4.146 24 C -0.131 4.131 25 C -0.161 4.161 26 C 0.065 3.935 27 O -0.315 6.315 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.049 0.951 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.260 0.740 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.127 0.873 42 H 0.162 0.838 43 H 0.170 0.830 44 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -12.530 4.055 12.295 18.017 hybrid contribution 1.034 0.092 -0.983 1.429 sum -11.496 4.147 11.312 16.653 Atomic orbital electron populations 1.22188 0.94040 1.03369 1.02528 1.21386 0.95770 0.81321 1.03241 1.57575 1.81562 1.22622 1.21827 1.18584 0.95808 0.90188 0.80218 1.21837 1.03905 1.27290 1.05963 0.93294 1.25661 1.00434 0.94679 0.97553 1.69990 1.37500 1.30546 1.18019 0.85661 0.79986 0.78253 0.78460 1.19042 1.20419 1.20143 1.01420 0.73783 0.72559 0.72370 1.93564 1.67525 1.53449 1.84060 1.93502 1.80643 1.58725 1.67028 1.55816 1.46043 1.48596 1.36053 1.20377 0.94359 0.82130 0.94929 0.89802 1.22689 0.90207 0.97313 1.04974 1.20990 0.95458 0.92455 1.01856 1.21093 0.96530 0.95563 0.99222 1.20995 0.93534 0.97337 0.99532 1.21024 0.97771 0.96773 0.99000 1.21175 0.99229 0.93732 0.98962 1.21568 0.91135 1.01493 1.01857 1.18033 0.86061 0.90690 0.98765 1.84742 1.37960 1.61083 1.47712 0.91506 0.92760 0.89547 0.90934 0.90071 0.95117 0.96432 0.92416 0.73958 0.88291 0.88027 0.88836 0.88547 0.87314 0.83781 0.82973 0.73375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 10.23 71.98 0.74 -3.24 16 2 C 0.11 3.57 6.41 86.38 0.55 4.13 16 3 N -0.99 -40.16 2.83 -519.84 -1.47 -41.63 16 4 C 0.28 13.63 4.99 85.63 0.43 14.05 16 5 C -0.55 -31.01 9.38 25.60 0.24 -30.77 16 6 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 7 C 0.02 0.93 5.46 84.66 0.46 1.39 16 8 N -0.92 -53.38 13.29 21.45 0.28 -53.10 16 9 Si 0.95 44.62 29.54 68.60 2.03 46.64 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 13 S 2.79 110.22 6.01 -56.49 -0.34 109.88 16 14 O -1.00 -48.20 15.21 -128.00 -1.95 -50.14 16 15 O -1.01 -42.47 16.82 -128.00 -2.15 -44.62 16 16 N -1.10 -31.64 5.54 -169.70 -0.94 -32.58 16 17 C 0.19 5.30 3.43 44.91 0.15 5.45 16 18 H 0.08 2.79 6.97 -2.39 -0.02 2.77 16 19 C -0.11 -2.13 6.77 31.51 0.21 -1.92 16 20 C -0.07 -1.29 6.70 30.52 0.20 -1.08 16 21 C -0.12 -3.00 6.11 -19.49 -0.12 -3.12 16 22 C -0.11 -3.31 5.80 -19.55 -0.11 -3.42 16 23 C -0.13 -4.07 10.00 22.32 0.22 -3.85 16 24 C -0.11 -2.93 10.04 22.23 0.22 -2.71 16 25 C -0.14 -3.18 9.98 22.34 0.22 -2.95 16 26 C 0.11 2.48 6.70 22.49 0.15 2.63 16 27 O -0.50 -9.01 13.45 -92.48 -1.24 -10.25 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 2.54 8.12 -2.39 -0.02 2.52 16 32 H 0.08 2.54 6.99 -2.39 -0.02 2.53 16 33 H 0.03 1.53 8.11 -2.39 -0.02 1.51 16 34 H 0.02 0.95 6.58 -2.39 -0.02 0.93 16 35 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 36 H 0.42 9.58 8.74 -96.74 -0.85 8.74 16 37 H 0.10 1.51 7.93 -2.39 -0.02 1.49 16 38 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.11 4.01 6.54 -2.91 -0.02 3.99 16 42 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 43 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 44 H 0.41 3.58 9.06 -74.06 -0.67 2.91 16 Total: -1.00 -75.32 376.13 -2.68 -78.00 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -0.48 Total: 23.21 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: 3.58 Total: -25.40 kcal Atomic # 7 Polarization: -125.18 SS G_CDS: -2.13 Total: -127.31 kcal Atomic # 8 Polarization: -99.68 SS G_CDS: -5.34 Total: -105.02 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: 110.22 SS G_CDS: -0.34 Total: 109.88 kcal Total: -75.32 -2.68 -78.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337092619.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.062 kcal (2) G-P(sol) polarization free energy of solvation -75.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.03 seconds