Wall clock time and date at job start Sat Apr 11 2020 05:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 N 1.65598 * 107.21541 * 89.99985 * 14 12 2 18 18 C 1.46501 * 120.00034 * 65.00515 * 17 14 12 19 19 C 1.50707 * 109.47168 * 165.00185 * 18 17 14 20 20 C 1.38267 * 119.97194 * 269.71960 * 19 18 17 21 21 C 1.38293 * 120.03659 * 179.78710 * 20 19 18 22 22 C 1.37969 * 119.92175 * 0.47159 * 21 20 19 23 23 C 1.38604 * 120.03610 * 359.78075 * 22 21 20 24 24 C 1.37970 * 120.04081 * 359.97438 * 23 22 21 25 25 C 1.51082 * 107.27288 * 179.97438 * 23 22 21 26 26 O 1.43944 * 105.95510 * 17.68993 * 25 23 22 27 27 C 1.43947 * 104.95085 * 331.55341 * 26 25 23 28 28 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 29 29 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 33 33 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 34 34 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 35 35 H 0.96998 * 120.00285 * 244.99932 * 17 14 12 36 36 H 1.09001 * 109.46915 * 284.99450 * 18 17 14 37 37 H 1.08992 * 109.47300 * 44.99797 * 18 17 14 38 38 H 1.07999 * 119.98215 * 359.97438 * 20 19 18 39 39 H 1.08001 * 120.04245 * 180.25186 * 21 20 19 40 40 H 1.07997 * 120.03935 * 180.02562 * 24 23 22 41 41 H 1.09002 * 110.15528 * 136.81099 * 25 23 22 42 42 H 1.09003 * 110.15254 * 258.56843 * 25 23 22 43 43 H 1.08996 * 110.15248 * 147.56830 * 27 26 25 44 44 H 1.08998 * 110.15372 * 269.25234 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 7 4.5436 -0.1041 -1.8180 18 6 5.1357 -1.4439 -1.8417 19 6 6.6349 -1.3327 -1.7352 20 6 7.4030 -1.2308 -2.8803 21 6 8.7785 -1.1242 -2.7840 22 6 9.3840 -1.1295 -1.5443 23 6 8.6143 -1.2368 -0.3966 24 6 7.2417 -1.3381 -0.4926 25 6 9.5599 -1.2139 0.7815 26 8 10.7988 -0.6758 0.2840 27 6 10.8278 -1.0370 -1.1091 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.7089 1.1611 3.4845 32 1 0.7376 -2.1442 -1.9996 33 1 2.4629 -2.5817 -1.9866 34 1 1.5295 -2.5968 -0.4711 35 1 5.0733 0.6551 -1.5281 36 1 4.7540 -2.0247 -1.0019 37 1 4.8736 -1.9405 -2.7759 38 1 6.9284 -1.2314 -3.8504 39 1 9.3783 -1.0406 -3.6782 40 1 6.6419 -1.4213 0.4017 41 1 9.1623 -0.5746 1.5697 42 1 9.7141 -2.2248 1.1589 43 1 11.3454 -0.2700 -1.6852 44 1 11.3222 -1.9999 -1.2371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337740887.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:33 Heat of formation + Delta-G solvation = -107.693343 kcal Electronic energy + Delta-G solvation = -27970.349562 eV Core-core repulsion = 24013.804052 eV Total energy + Delta-G solvation = -3956.545511 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.66405 -38.91959 -38.30965 -37.87136 -36.90316 -36.05111 -34.48964 -32.53493 -32.25172 -30.91377 -29.05851 -27.27503 -27.13950 -26.91862 -24.78354 -22.70397 -22.61929 -21.85100 -20.37175 -18.80973 -18.45448 -18.24153 -17.70974 -17.38237 -17.33806 -16.99908 -16.77041 -16.24043 -15.72824 -15.28950 -15.12381 -14.92063 -14.73577 -14.50768 -14.18440 -14.10113 -13.89105 -13.69420 -13.49771 -13.43542 -13.21033 -13.15735 -13.10204 -12.96744 -12.88534 -12.71481 -12.67054 -12.24780 -12.20052 -12.10488 -11.87455 -11.85904 -11.19401 -11.07813 -10.49970 -10.46351 -9.88324 -9.67621 -9.50490 -8.07158 -6.21966 -0.35923 0.18093 0.32689 1.47811 1.48344 1.55535 2.01876 2.46681 2.55878 2.73116 2.93958 3.15129 3.21602 3.45177 3.62221 3.71294 3.96474 4.09271 4.23468 4.33550 4.38102 4.43373 4.46565 4.56036 4.61460 4.72632 4.75834 4.81499 4.82982 4.90752 4.98583 5.05106 5.06457 5.17252 5.27886 5.29263 5.29982 5.54495 5.62689 5.67983 5.69419 5.85973 5.90762 6.03647 6.15436 6.30755 6.87292 7.47717 8.97276 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010578 B = 0.003963 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.264773 B = 7064.265036 C = 9063.941453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.274 3.726 3 H 0.023 0.977 4 C -0.528 4.528 5 H 0.073 0.927 6 C 0.016 3.984 7 N -0.919 5.919 8 Si 0.957 3.043 9 H -0.293 1.293 10 H -0.268 1.268 11 H -0.270 1.270 12 N -0.996 5.996 13 C 0.097 3.903 14 S 2.800 3.200 15 O -1.004 7.004 16 O -1.020 7.020 17 N -1.116 6.116 18 C 0.159 3.841 19 C -0.096 4.096 20 C -0.101 4.101 21 C -0.094 4.094 22 C -0.137 4.137 23 C -0.149 4.149 24 C -0.085 4.085 25 C 0.089 3.911 26 O -0.382 6.382 27 C 0.089 3.911 28 H 0.017 0.983 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.262 0.738 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.418 0.582 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.146 0.854 39 H 0.154 0.846 40 H 0.128 0.872 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.112 0.888 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.478 -8.530 -8.277 20.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.169 3.831 3 H 0.041 0.959 4 C -0.567 4.567 5 H 0.091 0.909 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.783 3.217 9 H -0.219 1.219 10 H -0.193 1.193 11 H -0.195 1.195 12 N -0.838 5.838 13 C -0.048 4.048 14 S 2.809 3.191 15 O -0.987 6.987 16 O -1.004 7.004 17 N -0.877 5.877 18 C 0.034 3.966 19 C -0.098 4.098 20 C -0.119 4.119 21 C -0.112 4.112 22 C -0.137 4.137 23 C -0.150 4.150 24 C -0.104 4.104 25 C 0.013 3.987 26 O -0.301 6.301 27 C 0.013 3.987 28 H 0.036 0.964 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.252 0.748 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.164 0.836 39 H 0.172 0.828 40 H 0.146 0.854 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.130 0.870 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 16.126 -7.981 -8.863 20.057 hybrid contribution -0.020 0.025 1.451 1.451 sum 16.106 -7.956 -7.412 19.433 Atomic orbital electron populations 1.21948 0.98020 1.00073 0.99855 1.18376 0.91851 0.91386 0.81463 0.95880 1.21607 1.31509 1.13117 0.90471 0.90897 1.25689 0.95235 0.95584 1.01852 1.70019 1.37495 1.24048 1.24287 0.85627 0.78785 0.78742 0.78531 1.21859 1.19347 1.19531 1.57587 1.65116 1.22542 1.38518 1.21441 1.00624 0.80431 1.02345 1.01131 0.72990 0.71964 0.73043 1.93523 1.86499 1.76256 1.42413 1.93543 1.84551 1.35011 1.87297 1.55820 1.30754 1.15905 1.85226 1.20282 0.89793 0.82939 1.03612 1.19780 0.94584 1.01937 0.93449 1.21363 0.93695 0.98102 0.98755 1.20662 0.94332 0.99433 0.96779 1.21375 0.97018 1.00951 0.94404 1.21190 0.94521 1.02268 0.96980 1.20470 0.92949 0.99038 0.97956 1.21849 0.81871 1.00689 0.94329 1.89060 1.38817 1.78508 1.23738 1.21938 0.92013 1.02861 0.81873 0.96354 0.93664 0.91284 0.92850 0.93086 0.90346 0.90352 0.74761 0.90172 0.88597 0.83650 0.82807 0.85370 0.88233 0.89002 0.86994 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.61 8.97 71.98 0.65 -5.96 16 2 C 0.27 13.14 2.62 44.24 0.12 13.26 16 3 H 0.02 1.28 6.91 -2.39 -0.02 1.27 16 4 C -0.53 -25.96 7.99 25.60 0.20 -25.76 16 5 H 0.07 3.35 7.33 -2.91 -0.02 3.33 16 6 C 0.02 0.82 5.30 84.66 0.45 1.27 16 7 N -0.92 -50.61 11.32 21.45 0.24 -50.37 16 8 Si 0.96 40.42 29.54 68.60 2.03 42.45 16 9 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 11 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 12 N -1.00 -39.08 3.12 -520.45 -1.62 -40.71 16 13 C 0.10 3.11 9.28 127.77 1.19 4.29 16 14 S 2.80 104.81 6.09 -56.49 -0.34 104.46 16 15 O -1.00 -38.05 16.68 -128.00 -2.14 -40.18 16 16 O -1.02 -46.65 16.70 -128.00 -2.14 -48.79 16 17 N -1.12 -33.16 6.05 -190.78 -1.15 -34.31 16 18 C 0.16 3.85 6.37 85.64 0.55 4.39 16 19 C -0.10 -2.13 5.28 -19.84 -0.10 -2.23 16 20 C -0.10 -1.91 9.70 22.29 0.22 -1.69 16 21 C -0.09 -1.57 10.04 22.22 0.22 -1.35 16 22 C -0.14 -2.57 6.32 -19.72 -0.12 -2.69 16 23 C -0.15 -3.20 6.32 -19.72 -0.12 -3.33 16 24 C -0.09 -1.96 9.70 22.22 0.22 -1.74 16 25 C 0.09 1.71 7.63 71.36 0.54 2.25 16 26 O -0.38 -8.07 11.72 -148.98 -1.75 -9.82 16 27 C 0.09 1.39 7.63 71.36 0.54 1.94 16 28 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.04 1.97 7.67 -2.39 -0.02 1.95 16 30 H 0.07 3.62 6.07 -2.39 -0.01 3.60 16 31 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 32 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.08 2.03 7.79 -2.38 -0.02 2.01 16 34 H 0.08 2.54 7.02 -2.39 -0.02 2.53 16 35 H 0.42 11.91 8.64 -96.75 -0.84 11.07 16 36 H 0.08 1.91 8.09 -2.39 -0.02 1.89 16 37 H 0.10 2.08 7.69 -2.39 -0.02 2.06 16 38 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 39 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 40 H 0.13 2.97 8.06 -2.91 -0.02 2.94 16 41 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -67.09 374.26 -2.15 -69.24 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 0.18 Total: 25.39 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: 4.54 Total: -17.36 kcal Atomic # 7 Polarization: -122.85 SS G_CDS: -2.53 Total: -125.39 kcal Atomic # 8 Polarization: -92.78 SS G_CDS: -6.02 Total: -98.79 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Atomic # 16 Polarization: 104.81 SS G_CDS: -0.34 Total: 104.46 kcal Total: -67.09 -2.15 -69.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337740887.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.453 kcal (2) G-P(sol) polarization free energy of solvation -67.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds