Wall clock time and date at job start Sat Apr 11 2020 05:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46533 * 2 1 4 4 C 1.50704 * 109.47220 * 239.99958 * 2 1 3 5 5 H 1.07993 * 119.99591 * 239.99867 * 4 2 1 6 6 C 1.37872 * 119.99701 * 59.99647 * 4 2 1 7 7 N 1.31516 * 120.00542 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99830 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46784 * 60.00091 * 8 6 4 10 10 H 1.48501 * 109.47203 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46858 * 300.00304 * 8 6 4 12 12 N 1.46496 * 109.47284 * 119.99886 * 2 1 3 13 13 C 1.46501 * 120.00116 * 59.99848 * 12 2 1 14 14 S 1.65597 * 119.99889 * 240.00352 * 12 2 1 15 15 O 1.42100 * 106.40457 * 336.45741 * 14 12 2 16 16 O 1.42105 * 106.40313 * 203.53628 * 14 12 2 17 17 N 1.65603 * 107.22186 * 89.99764 * 14 12 2 18 18 C 1.46506 * 119.99656 * 64.99905 * 17 14 12 19 19 H 1.08998 * 110.73416 * 21.58779 * 18 17 14 20 20 C 1.54349 * 110.82203 * 257.95596 * 18 17 14 21 21 C 1.51384 * 105.16902 * 215.44401 * 20 18 17 22 22 C 1.38535 * 130.35941 * 197.18951 * 21 20 18 23 23 C 1.38122 * 120.33794 * 179.97438 * 22 21 20 24 24 C 1.38160 * 119.99521 * 0.02562 * 23 22 21 25 25 C 1.38607 * 119.87342 * 359.97438 * 24 23 22 26 26 O 1.35896 * 119.95282 * 180.02562 * 25 24 23 27 27 C 1.38124 * 109.75743 * 17.19101 * 21 20 18 28 28 C 1.51357 * 109.78716 * 359.97438 * 27 21 20 29 29 H 1.09003 * 109.47359 * 60.00325 * 1 2 3 30 30 H 1.09002 * 109.47025 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47304 * 300.00222 * 1 2 3 32 32 H 0.96994 * 120.00175 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.47161 * 270.00409 * 13 12 2 34 34 H 1.08997 * 109.46488 * 30.00109 * 13 12 2 35 35 H 1.09000 * 109.46895 * 150.00003 * 13 12 2 36 36 H 0.97001 * 120.00115 * 245.00130 * 17 14 12 37 37 H 1.09000 * 110.30378 * 334.36692 * 20 18 17 38 38 H 1.08997 * 110.29933 * 96.52071 * 20 18 17 39 39 H 1.08008 * 119.83226 * 359.97438 * 22 21 20 40 40 H 1.08003 * 120.00862 * 180.02562 * 23 22 21 41 41 H 1.08001 * 120.06759 * 179.97438 * 24 23 22 42 42 H 0.96703 * 113.99873 * 269.97747 * 26 25 24 43 43 H 1.09003 * 110.30576 * 223.89728 * 28 27 21 44 44 H 1.09003 * 110.38863 * 101.78896 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.8258 -2.5203 -4.0076 10 1 1.8269 -0.4200 -5.2205 11 1 3.8064 -1.1209 -4.0081 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0931 1.4281 14 16 2.9704 0.1143 2.2862 15 8 3.5794 1.1831 1.5748 16 8 3.7118 -0.8787 2.9815 17 7 1.9607 0.8092 3.3998 18 6 1.1510 -0.0351 4.2817 19 1 1.5798 -1.0342 4.3600 20 6 -0.3111 -0.0978 3.7908 21 6 -1.1496 -0.1532 5.0500 22 6 -2.4702 -0.5301 5.2325 23 6 -3.0360 -0.5020 6.4922 24 6 -2.2843 -0.0961 7.5781 25 6 -0.9627 0.2818 7.4003 26 8 -0.2217 0.6808 8.4674 27 6 -0.3941 0.2534 6.1324 28 6 1.0045 0.6096 5.6763 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.7094 1.1617 -3.4844 33 1 0.7376 -2.1443 1.9994 34 1 1.5296 -2.5967 0.4709 35 1 2.4630 -2.5818 1.9864 36 1 1.9054 1.7752 3.4681 37 1 -0.5546 0.7939 3.2131 38 1 -0.4703 -0.9935 3.1906 39 1 -3.0604 -0.8474 4.3854 40 1 -4.0658 -0.7974 6.6285 41 1 -2.7256 -0.0734 8.5635 42 1 -0.2637 1.6310 8.6421 43 1 1.7431 0.1970 6.3636 44 1 1.1170 1.6915 5.6060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337761302.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:57 Heat of formation + Delta-G solvation = -91.885359 kcal Electronic energy + Delta-G solvation = -28444.354676 eV Core-core repulsion = 24488.494651 eV Total energy + Delta-G solvation = -3955.860025 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.59979 -37.80700 -36.70007 -36.26272 -36.06349 -35.25430 -32.76219 -32.59158 -30.49452 -29.12017 -27.91539 -27.34675 -25.51649 -25.18276 -22.56059 -21.38803 -21.07369 -20.80008 -19.01211 -18.17389 -17.43752 -16.86846 -16.55155 -16.24441 -15.93141 -15.72809 -15.22471 -15.15597 -14.51805 -14.11634 -13.80078 -13.45910 -13.40038 -13.05518 -12.91492 -12.67820 -12.63217 -12.32415 -12.10675 -11.88190 -11.83466 -11.53397 -11.42772 -11.40074 -11.27142 -11.21509 -11.16527 -10.91377 -10.84829 -10.69896 -10.48478 -10.23464 -10.07875 -9.43354 -9.25854 -8.74754 -8.73488 -8.46273 -7.99561 -6.08673 -4.15233 1.04664 1.10912 1.18136 3.29372 3.33953 3.36527 3.39255 3.42589 4.00551 4.06576 4.19002 4.38946 4.47605 4.76596 4.81739 4.93928 4.98056 5.05015 5.23175 5.24741 5.30404 5.47409 5.57376 5.64502 5.68408 5.75981 5.79200 5.93409 6.11603 6.13208 6.21664 6.27976 6.36281 6.40680 6.61224 6.65913 6.76840 6.82325 7.01361 7.10840 7.43011 7.46829 7.61402 7.77976 8.03565 8.26219 8.86532 9.50532 10.96888 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018459 B = 0.003293 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.494994 B = 8500.651584 C = 9412.173556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.270 3.730 3 H 0.058 0.942 4 C -0.522 4.522 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.987 5.987 13 C 0.094 3.906 14 S 2.778 3.222 15 O -0.973 6.973 16 O -0.996 6.996 17 N -1.124 6.124 18 C 0.157 3.843 19 H 0.105 0.895 20 C -0.104 4.104 21 C -0.070 4.070 22 C -0.115 4.115 23 C -0.104 4.104 24 C -0.150 4.150 25 C 0.116 3.884 26 O -0.499 6.499 27 C -0.122 4.122 28 C -0.079 4.079 29 H 0.091 0.909 30 H 0.032 0.968 31 H 0.011 0.989 32 H 0.264 0.736 33 H 0.037 0.963 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.412 0.588 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.387 0.613 43 H 0.085 0.915 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.099 -0.034 18.318 20.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.167 3.833 3 H 0.076 0.924 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.829 5.829 13 C -0.053 4.053 14 S 2.787 3.213 15 O -0.957 6.957 16 O -0.979 6.979 17 N -0.880 5.880 18 C 0.048 3.952 19 H 0.123 0.877 20 C -0.143 4.143 21 C -0.070 4.070 22 C -0.133 4.133 23 C -0.122 4.122 24 C -0.169 4.169 25 C 0.072 3.928 26 O -0.309 6.309 27 C -0.123 4.123 28 C -0.118 4.118 29 H 0.109 0.891 30 H 0.051 0.949 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.246 0.754 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.243 0.757 43 H 0.103 0.897 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.027 -0.654 18.188 19.509 hybrid contribution -0.460 0.469 -0.820 1.051 sum -7.487 -0.186 17.368 18.914 Atomic orbital electron populations 1.22117 0.98187 0.99702 1.00537 1.18711 0.91288 0.92957 0.80378 0.92426 1.21301 1.31663 1.13066 0.90091 0.91957 1.24895 0.94937 0.94999 0.98971 1.69845 1.36484 1.22645 1.23881 0.86565 0.79364 0.79573 0.81935 1.20244 1.21246 1.20170 1.57631 1.69860 1.19786 1.35670 1.21360 0.98699 0.82451 1.02785 1.01999 0.73655 0.73241 0.72454 1.93621 1.74311 1.55979 1.71785 1.93534 1.69169 1.60732 1.74503 1.56292 1.61799 1.17147 1.52767 1.21268 0.90397 0.94676 0.88847 0.87729 1.21738 0.93101 1.04567 0.94850 1.20506 0.93774 0.97366 0.95385 1.20716 0.94181 1.00795 0.97573 1.20916 0.99786 0.99468 0.92023 1.21275 0.93010 1.02902 0.99664 1.18050 0.89657 1.00148 0.84943 1.84817 1.69735 1.29149 1.47168 1.20810 0.97092 1.01824 0.92540 1.21217 0.93124 1.01517 0.95949 0.89065 0.94868 0.96998 0.92656 0.94465 0.89733 0.91906 0.75429 0.88546 0.89310 0.85660 0.85451 0.85419 0.75694 0.89664 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 8.97 37.16 0.33 -2.80 16 2 C 0.27 6.33 2.62 -69.08 -0.18 6.15 16 3 H 0.06 1.52 6.91 -51.93 -0.36 1.16 16 4 C -0.52 -13.70 7.99 -34.44 -0.28 -13.98 16 5 H 0.06 1.63 7.33 -52.49 -0.38 1.24 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.33 11.32 55.43 0.63 -23.70 16 8 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.99 -19.45 3.12 -115.85 -0.36 -19.81 16 13 C 0.09 1.58 9.66 59.85 0.58 2.16 16 14 S 2.78 52.35 6.12 -107.50 -0.66 51.69 16 15 O -0.97 -22.10 16.70 -57.17 -0.95 -23.06 16 16 O -1.00 -20.10 16.14 -57.17 -0.92 -21.02 16 17 N -1.12 -15.64 5.61 -3.69 -0.02 -15.66 16 18 C 0.16 1.94 3.77 -66.52 -0.25 1.68 16 19 H 0.10 1.34 7.59 -51.93 -0.39 0.95 16 20 C -0.10 -1.23 6.49 -26.84 -0.17 -1.40 16 21 C -0.07 -0.78 6.14 -104.22 -0.64 -1.42 16 22 C -0.11 -1.15 10.03 -39.51 -0.40 -1.55 16 23 C -0.10 -0.92 10.04 -39.65 -0.40 -1.32 16 24 C -0.15 -1.39 9.98 -39.47 -0.39 -1.79 16 25 C 0.12 1.21 6.70 -39.17 -0.26 0.95 16 26 O -0.50 -4.63 13.45 -19.41 -0.26 -4.90 16 27 C -0.12 -1.36 6.11 -104.06 -0.64 -1.99 16 28 C -0.08 -0.86 6.43 -26.86 -0.17 -1.03 16 29 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 30 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 31 H 0.01 0.21 7.94 -51.93 -0.41 -0.20 16 32 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.04 0.52 6.82 -51.93 -0.35 0.17 16 34 H 0.08 1.51 7.02 -51.93 -0.36 1.15 16 35 H 0.06 1.01 7.02 -51.93 -0.36 0.64 16 36 H 0.41 4.92 8.70 -34.47 -0.30 4.63 16 37 H 0.10 1.17 7.88 -51.93 -0.41 0.76 16 38 H 0.09 1.05 6.82 -51.93 -0.35 0.69 16 39 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 40 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 42 H 0.39 1.80 9.06 45.56 0.41 2.21 16 43 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.09 0.81 7.89 -51.93 -0.41 0.41 16 LS Contribution 368.91 15.07 5.56 5.56 Total: -1.00 -33.11 368.91 -10.21 -43.32 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.23 Total: 6.45 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -2.96 Total: -14.71 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: 0.25 Total: -59.17 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -2.14 Total: -48.97 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 52.35 SS G_CDS: -0.66 Total: 51.69 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.11 -10.21 -43.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337761302.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.569 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds