Wall clock time and date at job start Sat Apr 11 2020 05:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46533 * 2 1 4 4 C 1.50704 * 109.47220 * 239.99958 * 2 1 3 5 5 H 1.07993 * 119.99591 * 239.99867 * 4 2 1 6 6 C 1.37872 * 119.99701 * 59.99647 * 4 2 1 7 7 N 1.31516 * 120.00542 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99830 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46784 * 60.00091 * 8 6 4 10 10 H 1.48501 * 109.47203 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46858 * 300.00304 * 8 6 4 12 12 N 1.46496 * 109.47284 * 119.99886 * 2 1 3 13 13 C 1.46501 * 120.00116 * 59.99848 * 12 2 1 14 14 S 1.65597 * 119.99889 * 240.00352 * 12 2 1 15 15 O 1.42100 * 106.40457 * 336.45741 * 14 12 2 16 16 O 1.42105 * 106.40313 * 203.53628 * 14 12 2 17 17 N 1.65603 * 107.22186 * 89.99764 * 14 12 2 18 18 C 1.46506 * 119.99656 * 64.99905 * 17 14 12 19 19 H 1.08998 * 110.73416 * 21.58779 * 18 17 14 20 20 C 1.54349 * 110.82203 * 257.95596 * 18 17 14 21 21 C 1.51384 * 105.16902 * 215.44401 * 20 18 17 22 22 C 1.38535 * 130.35941 * 197.18951 * 21 20 18 23 23 C 1.38122 * 120.33794 * 179.97438 * 22 21 20 24 24 C 1.38160 * 119.99521 * 0.02562 * 23 22 21 25 25 C 1.38607 * 119.87342 * 359.97438 * 24 23 22 26 26 O 1.35896 * 119.95282 * 180.02562 * 25 24 23 27 27 C 1.38124 * 109.75743 * 17.19101 * 21 20 18 28 28 C 1.51357 * 109.78716 * 359.97438 * 27 21 20 29 29 H 1.09003 * 109.47359 * 60.00325 * 1 2 3 30 30 H 1.09002 * 109.47025 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47304 * 300.00222 * 1 2 3 32 32 H 0.96994 * 120.00175 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.47161 * 270.00409 * 13 12 2 34 34 H 1.08997 * 109.46488 * 30.00109 * 13 12 2 35 35 H 1.09000 * 109.46895 * 150.00003 * 13 12 2 36 36 H 0.97001 * 120.00115 * 245.00130 * 17 14 12 37 37 H 1.09000 * 110.30378 * 334.36692 * 20 18 17 38 38 H 1.08997 * 110.29933 * 96.52071 * 20 18 17 39 39 H 1.08008 * 119.83226 * 359.97438 * 22 21 20 40 40 H 1.08003 * 120.00862 * 180.02562 * 23 22 21 41 41 H 1.08001 * 120.06759 * 179.97438 * 24 23 22 42 42 H 0.96703 * 113.99873 * 269.97747 * 26 25 24 43 43 H 1.09003 * 110.30576 * 223.89728 * 28 27 21 44 44 H 1.09003 * 110.38863 * 101.78896 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.8258 -2.5203 -4.0076 10 1 1.8269 -0.4200 -5.2205 11 1 3.8064 -1.1209 -4.0081 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0931 1.4281 14 16 2.9704 0.1143 2.2862 15 8 3.5794 1.1831 1.5748 16 8 3.7118 -0.8787 2.9815 17 7 1.9607 0.8092 3.3998 18 6 1.1510 -0.0351 4.2817 19 1 1.5798 -1.0342 4.3600 20 6 -0.3111 -0.0978 3.7908 21 6 -1.1496 -0.1532 5.0500 22 6 -2.4702 -0.5301 5.2325 23 6 -3.0360 -0.5020 6.4922 24 6 -2.2843 -0.0961 7.5781 25 6 -0.9627 0.2818 7.4003 26 8 -0.2217 0.6808 8.4674 27 6 -0.3941 0.2534 6.1324 28 6 1.0045 0.6096 5.6763 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.7094 1.1617 -3.4844 33 1 0.7376 -2.1443 1.9994 34 1 1.5296 -2.5967 0.4709 35 1 2.4630 -2.5818 1.9864 36 1 1.9054 1.7752 3.4681 37 1 -0.5546 0.7939 3.2131 38 1 -0.4703 -0.9935 3.1906 39 1 -3.0604 -0.8474 4.3854 40 1 -4.0658 -0.7974 6.6285 41 1 -2.7256 -0.0734 8.5635 42 1 -0.2637 1.6310 8.6421 43 1 1.7431 0.1970 6.3636 44 1 1.1170 1.6915 5.6060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337761302.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:56 Heat of formation + Delta-G solvation = -116.469785 kcal Electronic energy + Delta-G solvation = -28445.420737 eV Core-core repulsion = 24488.494651 eV Total energy + Delta-G solvation = -3956.926086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.37604 -38.66231 -38.27764 -37.84098 -36.99225 -36.89568 -34.49990 -33.76651 -31.25518 -30.88518 -28.81089 -28.15540 -27.18899 -26.96321 -23.39348 -22.62161 -22.07429 -21.96447 -20.43396 -18.98655 -18.86423 -18.54990 -18.12699 -17.36648 -17.00099 -16.77167 -16.56995 -16.11058 -15.96988 -15.23634 -15.03412 -14.81933 -14.70957 -14.38495 -13.93471 -13.80834 -13.73796 -13.55468 -13.43292 -13.19752 -13.14767 -13.09887 -12.97122 -12.92275 -12.69501 -12.60864 -12.47382 -12.19912 -12.13164 -12.09457 -12.06073 -11.87666 -11.43510 -11.14041 -10.53722 -10.47046 -9.64234 -9.49864 -9.46271 -8.09703 -6.22613 -0.32888 0.33171 0.36926 1.43910 1.46011 1.52524 2.00983 2.44420 2.61837 2.68481 3.18876 3.31802 3.35756 3.45118 3.60083 3.98412 4.01303 4.07533 4.18080 4.25441 4.41858 4.52964 4.60061 4.67321 4.75392 4.79790 4.86386 4.93386 5.05153 5.05778 5.07914 5.17607 5.21427 5.26850 5.31366 5.46422 5.52710 5.63867 5.64336 5.72096 5.90819 5.94681 6.06771 6.22153 6.33748 6.84864 6.88773 7.46021 8.93973 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018459 B = 0.003293 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.494994 B = 8500.651584 C = 9412.173556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.276 3.724 3 H 0.024 0.976 4 C -0.540 4.540 5 H 0.057 0.943 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.952 3.048 9 H -0.266 1.266 10 H -0.283 1.283 11 H -0.281 1.281 12 N -0.992 5.992 13 C 0.089 3.911 14 S 2.795 3.205 15 O -1.016 7.016 16 O -1.010 7.010 17 N -1.107 6.107 18 C 0.150 3.850 19 H 0.101 0.899 20 C -0.100 4.100 21 C -0.083 4.083 22 C -0.124 4.124 23 C -0.101 4.101 24 C -0.153 4.153 25 C 0.109 3.891 26 O -0.510 6.510 27 C -0.137 4.137 28 C -0.073 4.073 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.039 0.961 32 H 0.264 0.736 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.423 0.577 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.136 0.864 40 H 0.154 0.846 41 H 0.147 0.853 42 H 0.407 0.593 43 H 0.084 0.916 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.534 -0.734 19.814 22.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.171 3.829 3 H 0.042 0.958 4 C -0.579 4.579 5 H 0.075 0.925 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.778 3.222 9 H -0.191 1.191 10 H -0.208 1.208 11 H -0.206 1.206 12 N -0.834 5.834 13 C -0.056 4.056 14 S 2.805 3.195 15 O -1.000 7.000 16 O -0.993 6.993 17 N -0.868 5.868 18 C 0.043 3.957 19 H 0.119 0.881 20 C -0.139 4.139 21 C -0.084 4.084 22 C -0.142 4.142 23 C -0.119 4.119 24 C -0.172 4.172 25 C 0.065 3.935 26 O -0.322 6.322 27 C -0.138 4.138 28 C -0.112 4.112 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.259 0.741 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.154 0.846 40 H 0.171 0.829 41 H 0.164 0.836 42 H 0.265 0.735 43 H 0.102 0.898 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.463 -1.356 19.698 21.482 hybrid contribution -0.033 0.699 -1.139 1.336 sum -8.496 -0.658 18.559 20.422 Atomic orbital electron populations 1.21892 0.96559 1.00183 1.00476 1.18373 0.92364 0.91214 0.80900 0.95791 1.21655 1.31609 1.13090 0.91564 0.92487 1.25590 0.95248 0.95710 1.01519 1.69963 1.37273 1.23603 1.24317 0.85707 0.78394 0.79101 0.78982 1.19122 1.20833 1.20647 1.57477 1.69853 1.20972 1.35127 1.21530 1.00551 0.80780 1.02771 1.01221 0.73597 0.72378 0.72348 1.93559 1.75844 1.57397 1.73212 1.93511 1.69924 1.61276 1.74592 1.55805 1.61401 1.17890 1.51701 1.21438 0.90456 0.94343 0.89485 0.88076 1.21642 0.92626 1.04306 0.95297 1.20510 0.94447 0.98514 0.94919 1.20947 0.93879 1.00776 0.98624 1.21243 1.00938 0.98332 0.91358 1.21558 0.92644 1.02205 1.00755 1.18205 0.90196 1.00240 0.84856 1.84763 1.69727 1.31038 1.46705 1.20873 0.97059 1.02784 0.93090 1.21144 0.93329 1.02165 0.94564 0.91862 0.93984 0.94235 0.92707 0.91279 0.90884 0.91139 0.74068 0.89022 0.89354 0.84569 0.82875 0.83568 0.73471 0.89769 0.88273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.60 8.97 71.98 0.65 -4.96 16 2 C 0.28 13.09 2.62 44.25 0.12 13.20 16 3 H 0.02 1.31 6.91 -2.38 -0.02 1.29 16 4 C -0.54 -28.66 7.99 25.60 0.20 -28.46 16 5 H 0.06 3.01 7.33 -2.91 -0.02 2.98 16 6 C 0.02 1.04 5.30 84.65 0.45 1.48 16 7 N -0.91 -50.52 11.32 21.45 0.24 -50.28 16 8 Si 0.95 42.87 29.54 68.60 2.03 44.90 16 9 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 N -0.99 -38.91 3.12 -520.43 -1.62 -40.53 16 13 C 0.09 2.92 9.66 127.77 1.23 4.16 16 14 S 2.80 105.35 6.12 -56.49 -0.35 105.00 16 15 O -1.02 -47.19 16.70 -128.00 -2.14 -49.33 16 16 O -1.01 -40.34 16.14 -128.00 -2.07 -42.41 16 17 N -1.11 -29.95 5.61 -165.60 -0.93 -30.88 16 18 C 0.15 3.52 3.77 45.90 0.17 3.69 16 19 H 0.10 2.46 7.59 -2.39 -0.02 2.44 16 20 C -0.10 -2.20 6.49 30.52 0.20 -2.01 16 21 C -0.08 -1.72 6.14 -19.60 -0.12 -1.84 16 22 C -0.12 -2.21 10.03 22.31 0.22 -1.99 16 23 C -0.10 -1.51 10.04 22.22 0.22 -1.28 16 24 C -0.15 -2.43 9.98 22.34 0.22 -2.21 16 25 C 0.11 2.05 6.70 22.54 0.15 2.21 16 26 O -0.51 -8.42 13.45 -92.38 -1.24 -9.66 16 27 C -0.14 -2.82 6.11 -19.50 -0.12 -2.94 16 28 C -0.07 -1.47 6.43 30.51 0.20 -1.27 16 29 H 0.06 3.09 6.07 -2.39 -0.01 3.07 16 30 H 0.04 1.67 7.67 -2.39 -0.02 1.65 16 31 H 0.04 1.41 7.94 -2.39 -0.02 1.39 16 32 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 33 H 0.07 1.81 6.82 -2.38 -0.02 1.79 16 34 H 0.07 2.56 7.02 -2.39 -0.02 2.55 16 35 H 0.07 2.19 7.02 -2.39 -0.02 2.17 16 36 H 0.42 9.78 8.70 -96.74 -0.84 8.93 16 37 H 0.09 2.09 7.88 -2.39 -0.02 2.07 16 38 H 0.09 1.92 6.82 -2.39 -0.02 1.90 16 39 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 40 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 41 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 42 H 0.41 2.91 9.06 -74.06 -0.67 2.24 16 43 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.10 1.69 7.89 -2.39 -0.02 1.67 16 Total: -1.00 -71.05 368.91 -2.74 -73.79 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -0.46 Total: 21.60 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: 3.80 Total: -22.21 kcal Atomic # 7 Polarization: -119.38 SS G_CDS: -2.31 Total: -121.69 kcal Atomic # 8 Polarization: -95.95 SS G_CDS: -5.45 Total: -101.40 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: 105.35 SS G_CDS: -0.35 Total: 105.00 kcal Total: -71.05 -2.74 -73.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337761302.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.680 kcal (2) G-P(sol) polarization free energy of solvation -71.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds