Wall clock time and date at job start Sat Apr 11 2020 05:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47323 * 2 1 4 4 C 1.50700 * 109.47589 * 239.99192 * 2 1 3 5 5 H 1.07993 * 120.00372 * 274.99887 * 4 2 1 6 6 C 1.37878 * 119.99627 * 94.71467 * 4 2 1 7 7 N 1.31517 * 119.99905 * 184.99752 * 6 4 2 8 8 Si 1.86798 * 120.00058 * 5.00752 * 6 4 2 9 9 H 1.48498 * 109.47557 * 85.03382 * 8 6 4 10 10 H 1.48507 * 109.47131 * 205.03413 * 8 6 4 11 11 H 1.48499 * 109.46950 * 325.02849 * 8 6 4 12 12 N 1.46503 * 109.46848 * 119.99238 * 2 1 3 13 13 C 1.46500 * 119.99714 * 60.00445 * 12 2 1 14 14 S 1.65600 * 120.00205 * 240.00049 * 12 2 1 15 15 O 1.42101 * 106.40125 * 203.54269 * 14 12 2 16 16 O 1.42097 * 106.40204 * 336.46244 * 14 12 2 17 17 N 1.65597 * 107.21667 * 90.00187 * 14 12 2 18 18 C 1.46500 * 120.00083 * 65.00277 * 17 14 12 19 19 C 1.52995 * 109.47151 * 165.00013 * 18 17 14 20 20 H 1.09004 * 110.66799 * 59.29684 * 19 18 17 21 21 C 1.54714 * 110.74969 * 182.50931 * 19 18 17 22 22 C 1.51638 * 101.90809 * 143.68141 * 21 19 18 23 23 C 1.37738 * 132.18515 * 164.30790 * 22 21 19 24 24 C 1.38351 * 119.98421 * 180.34371 * 23 22 21 25 25 C 1.38287 * 119.76620 * 359.97438 * 24 23 22 26 26 C 1.37935 * 120.34570 * 359.85709 * 25 24 23 27 27 C 1.38880 * 107.03482 * 344.32814 * 22 21 19 28 28 O 1.36386 * 111.33495 * 359.50922 * 27 22 21 29 29 H 1.09002 * 109.46563 * 54.05756 * 1 2 3 30 30 H 1.09005 * 109.47051 * 174.04866 * 1 2 3 31 31 H 1.08994 * 109.47353 * 294.05894 * 1 2 3 32 32 H 0.96996 * 119.99965 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.47570 * 90.00112 * 13 12 2 34 34 H 1.09003 * 109.47036 * 209.99686 * 13 12 2 35 35 H 1.09000 * 109.47597 * 329.99644 * 13 12 2 36 36 H 0.96998 * 120.00238 * 245.00019 * 17 14 12 37 37 H 1.09002 * 109.46732 * 284.99507 * 18 17 14 38 38 H 1.08994 * 109.47499 * 44.99603 * 18 17 14 39 39 H 1.09000 * 110.94194 * 261.83783 * 21 19 18 40 40 H 1.09009 * 110.93900 * 25.49111 * 21 19 18 41 41 H 1.08001 * 120.00942 * 0.35162 * 23 22 21 42 42 H 1.08000 * 120.12177 * 180.02562 * 24 23 22 43 43 H 1.07994 * 119.82795 * 179.87425 * 25 24 23 44 44 H 1.08008 * 119.87589 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.1357 -1.7855 -1.2288 6 6 2.3548 0.0113 -2.3599 7 7 2.6990 -0.6145 -3.4643 8 14 2.3029 1.8782 -2.3217 9 1 3.5905 2.3986 -1.7958 10 1 2.0845 2.3956 -3.6965 11 1 1.1924 2.3246 -1.4427 12 7 2.0183 -0.6905 1.1963 13 6 1.6643 -2.0930 1.4282 14 16 2.9703 0.1144 2.2863 15 8 3.7117 -0.8787 2.9816 16 8 3.5793 1.1831 1.5749 17 7 1.9605 0.8093 3.3998 18 6 1.1508 -0.0349 4.2817 19 6 0.6084 0.8080 5.4377 20 1 -0.0013 1.6296 5.0617 21 6 -0.2006 -0.0687 6.4228 22 6 0.1515 0.5558 7.7591 23 6 -0.4219 0.4541 9.0073 24 6 0.1136 1.1549 10.0733 25 6 1.2245 1.9554 9.8801 26 6 1.8023 2.0560 8.6316 27 6 1.2709 1.3517 7.5539 28 8 1.6826 1.3035 6.2545 29 1 -0.3632 0.6032 -0.8320 30 1 -0.3633 -1.0222 -0.1066 31 1 -0.3634 0.4189 0.9383 32 1 2.9261 -0.1066 -4.2588 33 1 2.4156 -2.7376 0.9720 34 1 1.6237 -2.2850 2.5004 35 1 0.6904 -2.3002 0.9849 36 1 1.9052 1.7753 3.4681 37 1 0.3186 -0.4563 3.7177 38 1 1.7667 -0.8419 4.6783 39 1 -1.2698 0.0092 6.2259 40 1 0.1270 -1.1075 6.3792 41 1 -1.2891 -0.1727 9.1539 42 1 -0.3339 1.0764 11.0531 43 1 1.6421 2.5044 10.7110 44 1 2.6701 2.6831 8.4894 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337873072.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:05 Heat of formation + Delta-G solvation = -75.909622 kcal Electronic energy + Delta-G solvation = -27915.336070 eV Core-core repulsion = 23960.168805 eV Total energy + Delta-G solvation = -3955.167265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.41981 -37.90209 -36.73857 -36.35294 -35.27588 -35.20204 -32.92251 -32.47022 -30.31836 -29.97501 -29.87641 -25.89034 -25.71240 -25.12271 -22.83951 -22.10980 -21.84702 -20.69979 -18.86932 -17.83992 -17.47823 -17.33558 -16.92739 -16.88796 -16.26535 -15.76397 -15.39724 -14.74641 -14.49451 -14.19654 -14.05741 -13.58767 -13.54116 -13.44293 -13.23149 -13.16562 -12.68734 -12.62396 -12.51243 -12.31292 -12.06056 -11.99051 -11.85167 -11.53527 -11.38790 -11.36386 -11.18664 -11.06431 -11.04447 -10.90658 -10.64567 -10.35389 -9.81639 -9.50128 -9.35171 -9.21375 -8.60697 -8.42943 -8.10777 -6.17347 -4.17877 0.96598 1.06944 1.10673 2.87983 3.27605 3.34685 3.39487 3.42250 3.46380 3.99459 4.06794 4.20897 4.37444 4.47717 4.59997 4.71850 4.75484 4.89879 4.95119 5.07428 5.13296 5.18966 5.23841 5.29093 5.42344 5.51743 5.54921 5.71869 5.84887 5.98008 6.00254 6.10235 6.15825 6.16369 6.29949 6.32059 6.36755 6.51788 6.55652 6.87063 6.91372 7.06242 7.17553 7.48898 7.64051 8.42704 8.87784 9.44186 10.94621 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024700 B = 0.002772 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.351423 B =10100.056757 C =10249.151307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.234 3.766 3 H 0.057 0.943 4 C -0.516 4.516 5 H 0.082 0.918 6 C 0.078 3.922 7 N -0.888 5.888 8 Si 0.867 3.133 9 H -0.265 1.265 10 H -0.286 1.286 11 H -0.264 1.264 12 N -0.985 5.985 13 C 0.107 3.893 14 S 2.772 3.228 15 O -0.990 6.990 16 O -0.975 6.975 17 N -1.132 6.132 18 C 0.126 3.874 19 C 0.075 3.925 20 H 0.096 0.904 21 C -0.104 4.104 22 C -0.175 4.175 23 C -0.070 4.070 24 C -0.152 4.152 25 C -0.086 4.086 26 C -0.140 4.140 27 C 0.108 3.892 28 O -0.292 6.292 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.026 0.974 32 H 0.267 0.733 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.414 0.586 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.869 2.816 24.490 26.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.130 3.870 3 H 0.074 0.926 4 C -0.556 4.556 5 H 0.100 0.900 6 C -0.127 4.127 7 N -0.525 5.525 8 Si 0.693 3.307 9 H -0.190 1.190 10 H -0.212 1.212 11 H -0.189 1.189 12 N -0.828 5.828 13 C -0.039 4.039 14 S 2.782 3.218 15 O -0.973 6.973 16 O -0.958 6.958 17 N -0.890 5.890 18 C -0.001 4.001 19 C 0.018 3.982 20 H 0.114 0.886 21 C -0.142 4.142 22 C -0.176 4.176 23 C -0.088 4.088 24 C -0.171 4.171 25 C -0.104 4.104 26 C -0.159 4.159 27 C 0.063 3.937 28 O -0.206 6.206 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.247 0.753 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.142 0.858 42 H 0.145 0.855 43 H 0.148 0.852 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.610 2.735 24.176 25.809 hybrid contribution -0.542 1.292 -0.123 1.407 sum -9.152 4.027 24.053 26.048 Atomic orbital electron populations 1.22245 0.98303 1.01251 0.98881 1.19126 0.91159 0.93253 0.83420 0.92573 1.21129 1.44233 0.96024 0.94240 0.90009 1.25004 0.93886 0.98467 0.95315 1.69886 1.44937 1.36077 1.01635 0.87011 0.80175 0.86298 0.77167 1.18956 1.21248 1.18882 1.57963 1.70135 1.19825 1.34841 1.21196 1.01799 0.82138 0.98800 1.02319 0.73774 0.73296 0.72455 1.93543 1.68881 1.60530 1.74385 1.93606 1.74146 1.56190 1.71902 1.56183 1.62696 1.17441 1.52708 1.21372 0.96110 0.93138 0.89463 1.23629 0.86845 0.96556 0.91182 0.88604 1.21816 1.01830 1.00421 0.90113 1.20771 0.99398 1.01360 0.96053 1.20312 0.99206 0.98555 0.90726 1.21033 0.97760 0.99455 0.98813 1.20886 0.95518 0.98022 0.95947 1.20322 1.02848 1.01808 0.90897 1.19710 0.93637 0.94695 0.85667 1.87017 1.37207 1.81860 1.14516 0.92698 0.92731 0.95522 0.92327 0.92685 0.93272 0.91054 0.75303 0.89478 0.89470 0.88505 0.88453 0.85759 0.85537 0.85212 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.03 37.16 0.34 -2.44 16 2 C 0.23 5.26 2.28 -69.08 -0.16 5.11 16 3 H 0.06 1.35 4.07 -51.93 -0.21 1.14 16 4 C -0.52 -13.93 8.82 -34.44 -0.30 -14.23 16 5 H 0.08 2.35 7.67 -52.49 -0.40 1.95 16 6 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 7 N -0.89 -26.53 13.96 55.43 0.77 -25.75 16 8 Si 0.87 21.63 27.00 -169.99 -4.59 17.04 16 9 H -0.26 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.26 -6.10 6.81 56.52 0.38 -5.71 16 12 N -0.98 -19.33 3.12 -115.85 -0.36 -19.70 16 13 C 0.11 1.77 9.39 59.85 0.56 2.33 16 14 S 2.77 53.61 6.09 -107.50 -0.66 52.95 16 15 O -0.99 -20.77 16.68 -57.17 -0.95 -21.73 16 16 O -0.97 -22.65 16.70 -57.17 -0.95 -23.60 16 17 N -1.13 -15.99 6.01 -10.62 -0.06 -16.05 16 18 C 0.13 1.40 5.93 -4.04 -0.02 1.37 16 19 C 0.08 0.74 3.69 -25.83 -0.10 0.65 16 20 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 21 C -0.10 -0.83 6.65 -26.52 -0.18 -1.00 16 22 C -0.17 -1.68 6.27 -104.10 -0.65 -2.33 16 23 C -0.07 -0.56 10.03 -39.72 -0.40 -0.96 16 24 C -0.15 -1.13 10.07 -39.52 -0.40 -1.53 16 25 C -0.09 -0.67 10.02 -39.67 -0.40 -1.07 16 26 C -0.14 -1.38 10.06 -39.30 -0.40 -1.78 16 27 C 0.11 1.23 7.04 -38.96 -0.27 0.96 16 28 O -0.29 -3.68 10.79 -20.98 -0.23 -3.91 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.05 0.98 6.92 -51.93 -0.36 0.62 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.65 7.79 -51.93 -0.40 0.25 16 35 H 0.07 1.08 6.55 -51.93 -0.34 0.74 16 36 H 0.41 5.25 8.65 -34.47 -0.30 4.95 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 1.02 7.75 -51.93 -0.40 0.62 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.10 0.70 7.92 -51.92 -0.41 0.29 16 41 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 372.83 15.07 5.62 5.62 Total: -1.00 -35.32 372.83 -10.10 -45.41 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.21 Total: 2.54 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -2.47 Total: -12.82 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: 0.35 Total: -61.50 kcal Atomic # 8 Polarization: -47.10 SS G_CDS: -2.13 Total: -49.24 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.59 Total: 17.04 kcal Atomic # 16 Polarization: 53.61 SS G_CDS: -0.66 Total: 52.95 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.32 -10.10 -45.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337873072.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.497 kcal (2) G-P(sol) polarization free energy of solvation -35.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds