Wall clock time and date at job start Sat Apr 11 2020 05:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47323 * 2 1 4 4 C 1.50700 * 109.47589 * 239.99192 * 2 1 3 5 5 H 1.07993 * 120.00372 * 274.99887 * 4 2 1 6 6 C 1.37878 * 119.99627 * 94.71467 * 4 2 1 7 7 N 1.31517 * 119.99905 * 184.99752 * 6 4 2 8 8 Si 1.86798 * 120.00058 * 5.00752 * 6 4 2 9 9 H 1.48498 * 109.47557 * 85.03382 * 8 6 4 10 10 H 1.48507 * 109.47131 * 205.03413 * 8 6 4 11 11 H 1.48499 * 109.46950 * 325.02849 * 8 6 4 12 12 N 1.46503 * 109.46848 * 119.99238 * 2 1 3 13 13 C 1.46500 * 119.99714 * 60.00445 * 12 2 1 14 14 S 1.65600 * 120.00205 * 240.00049 * 12 2 1 15 15 O 1.42101 * 106.40125 * 203.54269 * 14 12 2 16 16 O 1.42097 * 106.40204 * 336.46244 * 14 12 2 17 17 N 1.65597 * 107.21667 * 90.00187 * 14 12 2 18 18 C 1.46500 * 120.00083 * 65.00277 * 17 14 12 19 19 C 1.52995 * 109.47151 * 165.00013 * 18 17 14 20 20 H 1.09004 * 110.66799 * 59.29684 * 19 18 17 21 21 C 1.54714 * 110.74969 * 182.50931 * 19 18 17 22 22 C 1.51638 * 101.90809 * 143.68141 * 21 19 18 23 23 C 1.37738 * 132.18515 * 164.30790 * 22 21 19 24 24 C 1.38351 * 119.98421 * 180.34371 * 23 22 21 25 25 C 1.38287 * 119.76620 * 359.97438 * 24 23 22 26 26 C 1.37935 * 120.34570 * 359.85709 * 25 24 23 27 27 C 1.38880 * 107.03482 * 344.32814 * 22 21 19 28 28 O 1.36386 * 111.33495 * 359.50922 * 27 22 21 29 29 H 1.09002 * 109.46563 * 54.05756 * 1 2 3 30 30 H 1.09005 * 109.47051 * 174.04866 * 1 2 3 31 31 H 1.08994 * 109.47353 * 294.05894 * 1 2 3 32 32 H 0.96996 * 119.99965 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.47570 * 90.00112 * 13 12 2 34 34 H 1.09003 * 109.47036 * 209.99686 * 13 12 2 35 35 H 1.09000 * 109.47597 * 329.99644 * 13 12 2 36 36 H 0.96998 * 120.00238 * 245.00019 * 17 14 12 37 37 H 1.09002 * 109.46732 * 284.99507 * 18 17 14 38 38 H 1.08994 * 109.47499 * 44.99603 * 18 17 14 39 39 H 1.09000 * 110.94194 * 261.83783 * 21 19 18 40 40 H 1.09009 * 110.93900 * 25.49111 * 21 19 18 41 41 H 1.08001 * 120.00942 * 0.35162 * 23 22 21 42 42 H 1.08000 * 120.12177 * 180.02562 * 24 23 22 43 43 H 1.07994 * 119.82795 * 179.87425 * 25 24 23 44 44 H 1.08008 * 119.87589 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.1357 -1.7855 -1.2288 6 6 2.3548 0.0113 -2.3599 7 7 2.6990 -0.6145 -3.4643 8 14 2.3029 1.8782 -2.3217 9 1 3.5905 2.3986 -1.7958 10 1 2.0845 2.3956 -3.6965 11 1 1.1924 2.3246 -1.4427 12 7 2.0183 -0.6905 1.1963 13 6 1.6643 -2.0930 1.4282 14 16 2.9703 0.1144 2.2863 15 8 3.7117 -0.8787 2.9816 16 8 3.5793 1.1831 1.5749 17 7 1.9605 0.8093 3.3998 18 6 1.1508 -0.0349 4.2817 19 6 0.6084 0.8080 5.4377 20 1 -0.0013 1.6296 5.0617 21 6 -0.2006 -0.0687 6.4228 22 6 0.1515 0.5558 7.7591 23 6 -0.4219 0.4541 9.0073 24 6 0.1136 1.1549 10.0733 25 6 1.2245 1.9554 9.8801 26 6 1.8023 2.0560 8.6316 27 6 1.2709 1.3517 7.5539 28 8 1.6826 1.3035 6.2545 29 1 -0.3632 0.6032 -0.8320 30 1 -0.3633 -1.0222 -0.1066 31 1 -0.3634 0.4189 0.9383 32 1 2.9261 -0.1066 -4.2588 33 1 2.4156 -2.7376 0.9720 34 1 1.6237 -2.2850 2.5004 35 1 0.6904 -2.3002 0.9849 36 1 1.9052 1.7753 3.4681 37 1 0.3186 -0.4563 3.7177 38 1 1.7667 -0.8419 4.6783 39 1 -1.2698 0.0092 6.2259 40 1 0.1270 -1.1075 6.3792 41 1 -1.2891 -0.1727 9.1539 42 1 -0.3339 1.0764 11.0531 43 1 1.6421 2.5044 10.7110 44 1 2.6701 2.6831 8.4894 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337873072.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:04 Heat of formation + Delta-G solvation = -102.609991 kcal Electronic energy + Delta-G solvation = -27916.493885 eV Core-core repulsion = 23960.168805 eV Total energy + Delta-G solvation = -3956.325080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.10244 -38.59577 -38.37227 -37.98566 -36.93506 -36.23223 -34.49904 -33.60332 -31.64502 -30.94423 -30.65562 -27.34571 -26.99596 -26.54367 -23.52220 -22.82932 -22.49386 -22.39961 -20.30742 -19.27737 -18.87918 -18.45021 -18.29531 -17.67980 -17.59434 -16.99597 -16.43943 -16.14878 -15.56680 -15.27758 -15.13808 -14.87171 -14.62538 -14.51898 -14.41067 -14.17139 -14.04080 -13.94735 -13.56223 -13.50214 -13.39967 -13.21357 -13.18375 -13.02332 -12.97367 -12.64025 -12.59743 -12.41836 -12.26234 -12.02100 -11.79226 -11.77213 -11.68778 -11.23861 -10.75941 -10.56692 -9.82286 -9.72588 -9.09670 -8.32526 -6.35257 -0.41989 0.35789 0.43264 1.29253 1.39754 1.43066 1.96941 2.22191 2.31856 2.61252 2.77968 3.07497 3.27862 3.42117 3.57265 3.82826 3.96534 3.99074 4.06562 4.22322 4.32880 4.40198 4.48453 4.50514 4.58506 4.66462 4.70075 4.76069 4.84209 4.89051 4.90670 4.93833 5.02060 5.14897 5.15349 5.36973 5.40451 5.48416 5.54725 5.57447 5.60315 5.72871 5.88771 6.09094 6.25759 6.33464 6.71649 7.30112 8.83395 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024700 B = 0.002772 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.351423 B =10100.056757 C =10249.151307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.234 3.766 3 H 0.044 0.956 4 C -0.516 4.516 5 H 0.051 0.949 6 C 0.021 3.979 7 N -0.938 5.938 8 Si 0.912 3.088 9 H -0.284 1.284 10 H -0.279 1.279 11 H -0.230 1.230 12 N -0.991 5.991 13 C 0.100 3.900 14 S 2.790 3.210 15 O -1.011 7.011 16 O -1.019 7.019 17 N -1.116 6.116 18 C 0.117 3.883 19 C 0.073 3.927 20 H 0.110 0.890 21 C -0.098 4.098 22 C -0.184 4.184 23 C -0.075 4.075 24 C -0.151 4.151 25 C -0.090 4.090 26 C -0.161 4.161 27 C 0.072 3.928 28 O -0.323 6.323 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.267 0.733 33 H 0.031 0.969 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.423 0.577 37 H 0.120 0.880 38 H 0.080 0.920 39 H 0.124 0.876 40 H 0.104 0.896 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.877 3.308 27.505 30.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.129 3.871 3 H 0.062 0.938 4 C -0.556 4.556 5 H 0.069 0.931 6 C -0.178 4.178 7 N -0.578 5.578 8 Si 0.736 3.264 9 H -0.210 1.210 10 H -0.204 1.204 11 H -0.153 1.153 12 N -0.833 5.833 13 C -0.045 4.045 14 S 2.800 3.200 15 O -0.994 6.994 16 O -1.003 7.003 17 N -0.880 5.880 18 C -0.009 4.009 19 C 0.016 3.984 20 H 0.128 0.872 21 C -0.135 4.135 22 C -0.185 4.185 23 C -0.093 4.093 24 C -0.169 4.169 25 C -0.107 4.107 26 C -0.180 4.180 27 C 0.027 3.973 28 O -0.238 6.238 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.258 0.742 37 H 0.138 0.862 38 H 0.098 0.902 39 H 0.142 0.858 40 H 0.122 0.878 41 H 0.167 0.833 42 H 0.172 0.828 43 H 0.171 0.829 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.643 3.217 27.202 29.764 hybrid contribution 0.420 1.053 -0.838 1.409 sum -11.223 4.270 26.365 28.970 Atomic orbital electron populations 1.22110 0.94810 1.02193 1.00921 1.19014 0.93642 0.92055 0.82386 0.93814 1.21466 1.43059 0.94951 0.96106 0.93122 1.25737 0.94330 1.02495 0.95239 1.70009 1.47703 1.37612 1.02484 0.86270 0.80297 0.81722 0.78067 1.20998 1.20416 1.15281 1.57672 1.70031 1.21113 1.34443 1.21415 1.01844 0.80036 1.01222 1.01417 0.73726 0.72401 0.72483 1.93516 1.69852 1.61367 1.74668 1.93543 1.75765 1.57574 1.73404 1.55665 1.62475 1.18149 1.51667 1.21747 0.96516 0.92779 0.89847 1.23755 0.86626 0.97218 0.90828 0.87239 1.21860 1.03024 1.00116 0.88496 1.21064 0.98919 1.01166 0.97340 1.20691 0.99791 0.98626 0.90208 1.21449 0.97152 0.98301 0.99971 1.21216 0.95636 0.98128 0.95758 1.20581 1.03330 1.02317 0.91736 1.20049 0.95183 0.96518 0.85530 1.86963 1.38797 1.82555 1.15492 0.93279 0.91920 0.91336 0.92424 0.95056 0.89564 0.89316 0.74171 0.86188 0.90213 0.85795 0.87759 0.83276 0.82814 0.82948 0.85671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.84 9.03 71.98 0.65 -4.19 16 2 C 0.23 10.21 2.28 44.24 0.10 10.31 16 3 H 0.04 2.04 4.07 -2.39 -0.01 2.03 16 4 C -0.52 -28.22 8.82 25.60 0.23 -28.00 16 5 H 0.05 3.02 7.67 -2.91 -0.02 2.99 16 6 C 0.02 1.22 5.47 84.65 0.46 1.68 16 7 N -0.94 -57.95 13.96 21.45 0.30 -57.65 16 8 Si 0.91 44.63 27.00 68.60 1.85 46.48 16 9 H -0.28 -14.68 7.11 99.48 0.71 -13.97 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.23 -9.87 6.81 99.48 0.68 -9.20 16 12 N -0.99 -37.46 3.12 -520.44 -1.62 -39.09 16 13 C 0.10 3.14 9.39 127.77 1.20 4.34 16 14 S 2.79 105.33 6.09 -56.49 -0.34 104.99 16 15 O -1.01 -41.86 16.68 -128.00 -2.14 -43.99 16 16 O -1.02 -47.43 16.70 -128.00 -2.14 -49.57 16 17 N -1.12 -29.16 6.01 -187.50 -1.13 -30.28 16 18 C 0.12 2.23 5.93 86.38 0.51 2.74 16 19 C 0.07 1.24 3.69 31.18 0.12 1.36 16 20 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 21 C -0.10 -1.22 6.65 30.73 0.20 -1.02 16 22 C -0.18 -3.11 6.27 -19.53 -0.12 -3.23 16 23 C -0.08 -0.98 10.03 22.18 0.22 -0.75 16 24 C -0.15 -1.79 10.07 22.31 0.22 -1.56 16 25 C -0.09 -1.24 10.02 22.21 0.22 -1.02 16 26 C -0.16 -3.11 10.06 22.45 0.23 -2.88 16 27 C 0.07 1.58 7.04 22.68 0.16 1.74 16 28 O -0.32 -7.89 10.79 -97.98 -1.06 -8.95 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.06 2.04 6.92 -2.38 -0.02 2.03 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 33 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 2.05 7.79 -2.39 -0.02 2.03 16 35 H 0.09 2.47 6.55 -2.39 -0.02 2.45 16 36 H 0.42 9.91 8.65 -96.75 -0.84 9.07 16 37 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.08 1.67 7.75 -2.39 -0.02 1.65 16 39 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.10 1.15 7.92 -2.38 -0.02 1.13 16 41 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 42 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 43 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 44 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -80.28 372.83 -1.72 -82.00 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.15 Total: 16.54 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: 4.40 Total: -20.48 kcal Atomic # 7 Polarization: -124.57 SS G_CDS: -2.45 Total: -127.02 kcal Atomic # 8 Polarization: -97.18 SS G_CDS: -5.33 Total: -102.51 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.85 Total: 46.48 kcal Atomic # 16 Polarization: 105.33 SS G_CDS: -0.34 Total: 104.99 kcal Total: -80.28 -1.72 -82.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337873072.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.607 kcal (2) G-P(sol) polarization free energy of solvation -80.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds