Wall clock time and date at job start Sat Apr 11 2020 05:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46933 * 2 1 4 4 C 1.50693 * 109.47436 * 239.99798 * 2 1 3 5 5 H 1.07994 * 120.00395 * 240.00329 * 4 2 1 6 6 C 1.37880 * 119.99895 * 59.99552 * 4 2 1 7 7 N 1.31516 * 119.99865 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00318 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46505 * 90.00295 * 8 6 4 10 10 H 1.48500 * 109.47236 * 210.00363 * 8 6 4 11 11 H 1.48498 * 109.47012 * 330.00836 * 8 6 4 12 12 N 1.46500 * 109.47067 * 119.99602 * 2 1 3 13 13 C 1.46504 * 120.00021 * 60.00492 * 12 2 1 14 14 S 1.65599 * 120.00328 * 240.00155 * 12 2 1 15 15 O 1.42106 * 106.40086 * 336.46296 * 14 12 2 16 16 O 1.42100 * 106.40307 * 203.54591 * 14 12 2 17 17 N 1.65601 * 107.22034 * 90.00143 * 14 12 2 18 18 C 1.46501 * 119.99810 * 65.00032 * 17 14 12 19 19 C 1.53004 * 109.46889 * 165.00168 * 18 17 14 20 20 H 1.08994 * 110.66284 * 303.23494 * 19 18 17 21 21 C 1.54709 * 110.74623 * 179.81462 * 19 18 17 22 22 C 1.51648 * 101.92890 * 216.39791 * 21 19 18 23 23 C 1.37737 * 132.17364 * 195.85735 * 22 21 19 24 24 C 1.38349 * 119.98240 * 179.07864 * 23 22 21 25 25 C 1.38293 * 119.76101 * 0.02562 * 24 23 22 26 26 C 1.37932 * 120.35136 * 0.44632 * 25 24 23 27 27 C 1.38878 * 107.03710 * 15.34215 * 22 21 19 28 28 O 1.36136 * 111.23675 * 1.14080 * 27 22 21 29 29 H 1.08998 * 109.47058 * 299.99851 * 1 2 3 30 30 H 1.08991 * 109.47267 * 59.99857 * 1 2 3 31 31 H 1.08996 * 109.46685 * 180.02562 * 1 2 3 32 32 H 0.96998 * 120.00431 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.47247 * 269.99833 * 13 12 2 34 34 H 1.09000 * 109.46987 * 29.99242 * 13 12 2 35 35 H 1.08997 * 109.47151 * 149.99641 * 13 12 2 36 36 H 0.96999 * 120.00158 * 245.00826 * 17 14 12 37 37 H 1.08997 * 109.47131 * 44.99989 * 18 17 14 38 38 H 1.09000 * 109.47241 * 285.00294 * 18 17 14 39 39 H 1.09003 * 110.93406 * 98.23989 * 21 19 18 40 40 H 1.08999 * 110.94204 * 334.55891 * 21 19 18 41 41 H 1.08002 * 120.00982 * 359.06003 * 23 22 21 42 42 H 1.07995 * 120.11799 * 179.97438 * 24 23 22 43 43 H 1.08002 * 119.81918 * 180.16225 * 25 24 23 44 44 H 1.08001 * 119.87454 * 179.71894 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.3448 -2.1616 -4.4122 10 1 2.4873 -0.1402 -5.1120 11 1 3.6309 -1.7566 -3.7119 12 7 2.0184 -0.6905 1.1962 13 6 1.6645 -2.0932 1.4281 14 16 2.9704 0.1143 2.2863 15 8 3.5794 1.1831 1.5749 16 8 3.7119 -0.8788 2.9815 17 7 1.9607 0.8091 3.3999 18 6 1.1509 -0.0352 4.2818 19 6 0.6086 0.8077 5.4379 20 1 1.4240 1.2852 5.9812 21 6 -0.2563 -0.0555 6.3867 22 6 -1.3462 0.9185 6.7904 23 6 -2.2682 0.9026 7.8135 24 6 -3.1540 1.9548 7.9625 25 6 -3.1095 3.0196 7.0812 26 6 -2.1934 3.0331 6.0500 27 6 -1.2962 1.9790 5.8950 28 8 -0.3271 1.7882 4.9582 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0276 0.0005 32 1 0.7094 1.1617 -3.4843 33 1 0.7376 -2.1444 1.9994 34 1 1.5295 -2.5968 0.4709 35 1 2.4630 -2.5818 1.9864 36 1 1.9053 1.7751 3.4682 37 1 1.7669 -0.8423 4.6782 38 1 0.3188 -0.4566 3.7178 39 1 0.3198 -0.3770 7.2544 40 1 -0.6755 -0.9128 5.8600 41 1 -2.2999 0.0686 8.4991 42 1 -3.8781 1.9444 8.7637 43 1 -3.7988 3.8428 7.1982 44 1 -2.1685 3.8664 5.3635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337873075.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:13 Heat of formation + Delta-G solvation = -77.527097 kcal Electronic energy + Delta-G solvation = -27946.191082 eV Core-core repulsion = 23990.953678 eV Total energy + Delta-G solvation = -3955.237404 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.37572 -37.83648 -36.69047 -36.15180 -35.24374 -35.12802 -32.85596 -32.56653 -30.24932 -29.81341 -29.08579 -25.76262 -25.46524 -25.14858 -22.77935 -22.03290 -21.77265 -20.78153 -18.76945 -17.78968 -17.31786 -17.05092 -16.91015 -16.71137 -16.15405 -15.65107 -15.24160 -14.69284 -14.54343 -14.19265 -13.97823 -13.47343 -13.42780 -13.35258 -13.31235 -12.88019 -12.65748 -12.59931 -12.29149 -12.01945 -11.98826 -11.82379 -11.50675 -11.33812 -11.28979 -11.22108 -11.04308 -10.98630 -10.90837 -10.80292 -10.45770 -10.21051 -10.05562 -9.39196 -9.24361 -9.14478 -8.44337 -8.35809 -7.97407 -6.05877 -4.12640 1.03439 1.14109 1.20323 2.94330 3.28955 3.36075 3.39747 3.46264 3.49049 4.05195 4.10981 4.28290 4.41094 4.54911 4.67211 4.79322 4.82462 4.98832 5.00680 5.13330 5.25548 5.27117 5.29801 5.36950 5.50521 5.61879 5.69808 5.81558 5.92251 6.07032 6.08667 6.17226 6.23051 6.33996 6.39565 6.67465 6.82459 6.85730 6.98577 7.06258 7.14911 7.49958 7.64610 7.80977 8.06903 8.29079 8.89279 9.52885 10.99804 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017256 B = 0.002945 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.263792 B = 9505.284086 C =10312.529916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.269 3.731 3 H 0.059 0.941 4 C -0.521 4.521 5 H 0.063 0.937 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.988 5.988 13 C 0.095 3.905 14 S 2.780 3.220 15 O -0.972 6.972 16 O -0.998 6.998 17 N -1.131 6.131 18 C 0.128 3.872 19 C 0.076 3.924 20 H 0.096 0.904 21 C -0.104 4.104 22 C -0.176 4.176 23 C -0.070 4.070 24 C -0.153 4.153 25 C -0.086 4.086 26 C -0.139 4.139 27 C 0.111 3.889 28 O -0.292 6.292 29 H 0.011 0.989 30 H 0.091 0.909 31 H 0.031 0.969 32 H 0.263 0.737 33 H 0.036 0.964 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.416 0.584 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.130 0.870 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.725 -0.006 21.310 22.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.561 4.561 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.831 5.831 13 C -0.052 4.052 14 S 2.789 3.211 15 O -0.956 6.956 16 O -0.981 6.981 17 N -0.890 5.890 18 C 0.001 3.999 19 C 0.018 3.982 20 H 0.114 0.886 21 C -0.142 4.142 22 C -0.177 4.177 23 C -0.089 4.089 24 C -0.171 4.171 25 C -0.104 4.104 26 C -0.158 4.158 27 C 0.065 3.935 28 O -0.206 6.206 29 H 0.030 0.970 30 H 0.110 0.890 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.249 0.751 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.772 0.054 20.923 21.992 hybrid contribution -0.282 -0.128 -0.792 0.851 sum -7.053 -0.074 20.131 21.331 Atomic orbital electron populations 1.22100 0.98193 0.99649 1.00640 1.18728 0.91312 0.93013 0.80359 0.92356 1.21332 1.31620 1.13027 0.90072 0.91909 1.24913 0.94978 0.95004 0.99003 1.69865 1.36527 1.22622 1.23773 0.86495 0.79259 0.79274 0.82365 1.20679 1.21127 1.19844 1.57647 1.69861 1.19803 1.35762 1.21332 0.98593 0.82473 1.02784 1.01918 0.73605 0.73153 0.72451 1.93622 1.74327 1.55915 1.71709 1.93520 1.69251 1.60767 1.74582 1.56164 1.62075 1.17641 1.53131 1.21341 0.95469 0.92670 0.90467 1.23629 0.91709 0.88317 0.94518 0.88590 1.21808 0.94613 0.97964 0.99803 1.20783 1.01114 0.96546 0.99232 1.20300 0.93841 0.98492 0.96226 1.21023 1.00420 0.94813 1.00879 1.20886 0.97295 0.98432 0.93748 1.20330 0.97249 0.97591 1.00637 1.19632 0.90907 0.94162 0.88760 1.86937 1.35558 1.59369 1.38767 0.96981 0.89000 0.94939 0.92698 0.94586 0.89763 0.91881 0.75063 0.88551 0.90560 0.88600 0.88476 0.85839 0.85590 0.85223 0.85298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 8.97 37.16 0.33 -3.04 16 2 C 0.27 6.60 2.62 -69.08 -0.18 6.42 16 3 H 0.06 1.60 6.91 -51.93 -0.36 1.24 16 4 C -0.52 -14.03 7.99 -34.44 -0.28 -14.31 16 5 H 0.06 1.67 7.33 -52.49 -0.38 1.29 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.95 11.32 55.43 0.63 -24.33 16 8 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 12 N -0.99 -20.26 3.12 -115.85 -0.36 -20.63 16 13 C 0.09 1.64 9.65 59.85 0.58 2.21 16 14 S 2.78 53.65 6.14 -107.50 -0.66 52.99 16 15 O -0.97 -22.68 16.70 -57.17 -0.95 -23.63 16 16 O -1.00 -19.92 16.21 -57.17 -0.93 -20.85 16 17 N -1.13 -16.76 6.04 -10.61 -0.06 -16.83 16 18 C 0.13 1.52 5.92 -4.04 -0.02 1.50 16 19 C 0.08 0.80 3.70 -25.83 -0.10 0.70 16 20 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 21 C -0.10 -0.89 6.65 -26.52 -0.18 -1.07 16 22 C -0.18 -1.79 6.27 -104.10 -0.65 -2.44 16 23 C -0.07 -0.60 10.03 -39.72 -0.40 -1.00 16 24 C -0.15 -1.22 10.07 -39.52 -0.40 -1.62 16 25 C -0.09 -0.73 10.02 -39.67 -0.40 -1.12 16 26 C -0.14 -1.47 10.06 -39.30 -0.40 -1.86 16 27 C 0.11 1.33 7.04 -38.95 -0.27 1.05 16 28 O -0.29 -3.83 10.73 -20.17 -0.22 -4.05 16 29 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 31 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 1.54 7.02 -51.93 -0.36 1.18 16 35 H 0.06 1.01 7.02 -51.93 -0.36 0.64 16 36 H 0.42 5.79 8.60 -34.47 -0.30 5.49 16 37 H 0.10 1.01 7.75 -51.93 -0.40 0.61 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.76 7.92 -51.93 -0.41 0.35 16 41 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 43 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 372.97 15.07 5.62 5.62 Total: -1.00 -33.57 372.97 -10.65 -44.21 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.24 Total: 4.26 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -2.45 Total: -12.94 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: 0.20 Total: -61.78 kcal Atomic # 8 Polarization: -46.43 SS G_CDS: -2.10 Total: -48.53 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 53.65 SS G_CDS: -0.66 Total: 52.99 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.57 -10.65 -44.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337873075.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.313 kcal (2) G-P(sol) polarization free energy of solvation -33.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds