Wall clock time and date at job start Sat Apr 11 2020 05:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46933 * 2 1 4 4 C 1.50693 * 109.47436 * 239.99798 * 2 1 3 5 5 H 1.07994 * 120.00395 * 240.00329 * 4 2 1 6 6 C 1.37880 * 119.99895 * 59.99552 * 4 2 1 7 7 N 1.31516 * 119.99865 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00318 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46505 * 90.00295 * 8 6 4 10 10 H 1.48500 * 109.47236 * 210.00363 * 8 6 4 11 11 H 1.48498 * 109.47012 * 330.00836 * 8 6 4 12 12 N 1.46500 * 109.47067 * 119.99602 * 2 1 3 13 13 C 1.46504 * 120.00021 * 60.00492 * 12 2 1 14 14 S 1.65599 * 120.00328 * 240.00155 * 12 2 1 15 15 O 1.42106 * 106.40086 * 336.46296 * 14 12 2 16 16 O 1.42100 * 106.40307 * 203.54591 * 14 12 2 17 17 N 1.65601 * 107.22034 * 90.00143 * 14 12 2 18 18 C 1.46501 * 119.99810 * 65.00032 * 17 14 12 19 19 C 1.53004 * 109.46889 * 165.00168 * 18 17 14 20 20 H 1.08994 * 110.66284 * 303.23494 * 19 18 17 21 21 C 1.54709 * 110.74623 * 179.81462 * 19 18 17 22 22 C 1.51648 * 101.92890 * 216.39791 * 21 19 18 23 23 C 1.37737 * 132.17364 * 195.85735 * 22 21 19 24 24 C 1.38349 * 119.98240 * 179.07864 * 23 22 21 25 25 C 1.38293 * 119.76101 * 0.02562 * 24 23 22 26 26 C 1.37932 * 120.35136 * 0.44632 * 25 24 23 27 27 C 1.38878 * 107.03710 * 15.34215 * 22 21 19 28 28 O 1.36136 * 111.23675 * 1.14080 * 27 22 21 29 29 H 1.08998 * 109.47058 * 299.99851 * 1 2 3 30 30 H 1.08991 * 109.47267 * 59.99857 * 1 2 3 31 31 H 1.08996 * 109.46685 * 180.02562 * 1 2 3 32 32 H 0.96998 * 120.00431 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.47247 * 269.99833 * 13 12 2 34 34 H 1.09000 * 109.46987 * 29.99242 * 13 12 2 35 35 H 1.08997 * 109.47151 * 149.99641 * 13 12 2 36 36 H 0.96999 * 120.00158 * 245.00826 * 17 14 12 37 37 H 1.08997 * 109.47131 * 44.99989 * 18 17 14 38 38 H 1.09000 * 109.47241 * 285.00294 * 18 17 14 39 39 H 1.09003 * 110.93406 * 98.23989 * 21 19 18 40 40 H 1.08999 * 110.94204 * 334.55891 * 21 19 18 41 41 H 1.08002 * 120.00982 * 359.06003 * 23 22 21 42 42 H 1.07995 * 120.11799 * 179.97438 * 24 23 22 43 43 H 1.08002 * 119.81918 * 180.16225 * 25 24 23 44 44 H 1.08001 * 119.87454 * 179.71894 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.3448 -2.1616 -4.4122 10 1 2.4873 -0.1402 -5.1120 11 1 3.6309 -1.7566 -3.7119 12 7 2.0184 -0.6905 1.1962 13 6 1.6645 -2.0932 1.4281 14 16 2.9704 0.1143 2.2863 15 8 3.5794 1.1831 1.5749 16 8 3.7119 -0.8788 2.9815 17 7 1.9607 0.8091 3.3999 18 6 1.1509 -0.0352 4.2818 19 6 0.6086 0.8077 5.4379 20 1 1.4240 1.2852 5.9812 21 6 -0.2563 -0.0555 6.3867 22 6 -1.3462 0.9185 6.7904 23 6 -2.2682 0.9026 7.8135 24 6 -3.1540 1.9548 7.9625 25 6 -3.1095 3.0196 7.0812 26 6 -2.1934 3.0331 6.0500 27 6 -1.2962 1.9790 5.8950 28 8 -0.3271 1.7882 4.9582 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0276 0.0005 32 1 0.7094 1.1617 -3.4843 33 1 0.7376 -2.1444 1.9994 34 1 1.5295 -2.5968 0.4709 35 1 2.4630 -2.5818 1.9864 36 1 1.9053 1.7751 3.4682 37 1 1.7669 -0.8423 4.6782 38 1 0.3188 -0.4566 3.7178 39 1 0.3198 -0.3770 7.2544 40 1 -0.6755 -0.9128 5.8600 41 1 -2.2999 0.0686 8.4991 42 1 -3.8781 1.9444 8.7637 43 1 -3.7988 3.8428 7.1982 44 1 -2.1685 3.8664 5.3635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337873075.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:11 Heat of formation + Delta-G solvation = -101.153172 kcal Electronic energy + Delta-G solvation = -27947.215586 eV Core-core repulsion = 23990.953678 eV Total energy + Delta-G solvation = -3956.261907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.12702 -38.58358 -38.31942 -37.89097 -36.90526 -36.21749 -34.52344 -33.60297 -30.93736 -30.93097 -30.64722 -27.24908 -27.01552 -26.54219 -23.52665 -22.83852 -22.57206 -22.48449 -20.26248 -18.85262 -18.64288 -18.49130 -18.26236 -17.73992 -17.52610 -16.97643 -16.49200 -16.15849 -15.46934 -15.31369 -15.12069 -14.86944 -14.75300 -14.41478 -14.11324 -13.99316 -13.87823 -13.77826 -13.55478 -13.47071 -13.20476 -13.17017 -13.13390 -13.00987 -12.69862 -12.62694 -12.62024 -12.32788 -12.20462 -12.13522 -11.91455 -11.84888 -11.67327 -11.17503 -10.58525 -10.49754 -9.81428 -9.66293 -9.08763 -8.11945 -6.25840 -0.33723 0.36623 0.44246 1.41987 1.44119 1.53697 1.96954 2.24579 2.43234 2.62384 2.78696 3.16397 3.30062 3.43200 3.60326 3.84211 3.97341 4.00056 4.12846 4.22793 4.33225 4.42837 4.50298 4.58119 4.67528 4.74757 4.75401 4.79655 4.90306 4.93232 5.00017 5.04592 5.15192 5.16601 5.27989 5.41566 5.49262 5.58240 5.60545 5.66812 5.73942 5.86250 5.99292 6.16371 6.26741 6.29182 6.82236 7.43085 8.92463 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017256 B = 0.002945 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.263792 B = 9505.284086 C =10312.529916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.275 3.725 3 H 0.022 0.978 4 C -0.538 4.538 5 H 0.060 0.940 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.958 3.042 9 H -0.269 1.269 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.996 5.996 13 C 0.089 3.911 14 S 2.799 3.201 15 O -1.018 7.018 16 O -1.003 7.003 17 N -1.120 6.120 18 C 0.120 3.880 19 C 0.074 3.926 20 H 0.104 0.896 21 C -0.097 4.097 22 C -0.184 4.184 23 C -0.075 4.075 24 C -0.151 4.151 25 C -0.089 4.089 26 C -0.161 4.161 27 C 0.074 3.926 28 O -0.321 6.321 29 H 0.029 0.971 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.264 0.736 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.420 0.580 37 H 0.116 0.884 38 H 0.078 0.922 39 H 0.121 0.879 40 H 0.106 0.894 41 H 0.150 0.850 42 H 0.155 0.845 43 H 0.153 0.847 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.807 -1.586 23.436 25.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.170 3.830 3 H 0.040 0.960 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.783 3.217 9 H -0.194 1.194 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.838 5.838 13 C -0.057 4.057 14 S 2.808 3.192 15 O -1.003 7.003 16 O -0.986 6.986 17 N -0.882 5.882 18 C -0.006 4.006 19 C 0.017 3.983 20 H 0.122 0.878 21 C -0.135 4.135 22 C -0.185 4.185 23 C -0.093 4.093 24 C -0.168 4.168 25 C -0.107 4.107 26 C -0.179 4.179 27 C 0.029 3.971 28 O -0.236 6.236 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.255 0.745 37 H 0.134 0.866 38 H 0.096 0.904 39 H 0.140 0.860 40 H 0.124 0.876 41 H 0.167 0.833 42 H 0.172 0.828 43 H 0.171 0.829 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.859 -1.550 23.064 24.416 hybrid contribution 0.002 0.395 -1.319 1.377 sum -7.857 -1.156 21.745 23.150 Atomic orbital electron populations 1.21883 0.97043 1.00113 1.00114 1.18354 0.92030 0.91290 0.81291 0.96045 1.21662 1.31619 1.13090 0.91370 0.92189 1.25678 0.95227 0.95710 1.01803 1.69991 1.37398 1.23729 1.24347 0.85565 0.78820 0.78373 0.78916 1.19409 1.21056 1.19805 1.57522 1.69918 1.21212 1.35168 1.21543 1.00719 0.80551 1.02847 1.01140 0.73500 0.72289 0.72294 1.93556 1.75926 1.57517 1.73261 1.93504 1.69702 1.60979 1.74454 1.55767 1.61944 1.18121 1.52409 1.21654 0.95427 0.92970 0.90550 1.23703 0.92037 0.88390 0.94216 0.87796 1.21845 0.94055 0.97387 1.00191 1.21057 1.01853 0.96332 0.99270 1.20684 0.93186 0.99416 0.96004 1.21445 1.00358 0.94048 1.00987 1.21218 0.96963 0.99479 0.93029 1.20579 0.98060 0.97647 1.01639 1.19971 0.91670 0.95677 0.89743 1.86883 1.36411 1.60310 1.40020 0.95228 0.91722 0.93818 0.92672 0.91330 0.91013 0.90485 0.74491 0.86601 0.90386 0.86037 0.87614 0.83270 0.82750 0.82933 0.85721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.10 8.97 71.98 0.65 -5.45 16 2 C 0.27 13.73 2.62 44.24 0.12 13.85 16 3 H 0.02 1.24 6.91 -2.39 -0.02 1.22 16 4 C -0.54 -29.34 7.99 25.60 0.20 -29.14 16 5 H 0.06 3.22 7.33 -2.91 -0.02 3.20 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.92 -52.36 11.32 21.45 0.24 -52.12 16 8 Si 0.96 43.64 29.54 68.60 2.03 45.66 16 9 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 N -1.00 -40.61 3.12 -520.44 -1.62 -42.23 16 13 C 0.09 2.93 9.65 127.77 1.23 4.16 16 14 S 2.80 107.88 6.14 -56.49 -0.35 107.53 16 15 O -1.02 -48.98 16.70 -128.00 -2.14 -51.12 16 16 O -1.00 -38.96 16.21 -128.00 -2.07 -41.03 16 17 N -1.12 -32.64 6.04 -187.49 -1.13 -33.77 16 18 C 0.12 2.65 5.92 86.38 0.51 3.16 16 19 C 0.07 1.46 3.70 31.18 0.12 1.57 16 20 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 21 C -0.10 -1.43 6.65 30.73 0.20 -1.23 16 22 C -0.18 -3.42 6.27 -19.53 -0.12 -3.54 16 23 C -0.08 -1.08 10.03 22.18 0.22 -0.85 16 24 C -0.15 -1.98 10.07 22.31 0.22 -1.75 16 25 C -0.09 -1.37 10.02 22.21 0.22 -1.15 16 26 C -0.16 -3.38 10.06 22.45 0.23 -3.15 16 27 C 0.07 1.75 7.04 22.68 0.16 1.91 16 28 O -0.32 -8.43 10.73 -95.10 -1.02 -9.45 16 29 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 31 H 0.04 1.86 7.67 -2.39 -0.02 1.85 16 32 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.07 2.55 7.02 -2.39 -0.02 2.53 16 35 H 0.08 2.31 7.02 -2.39 -0.02 2.29 16 36 H 0.42 11.81 8.60 -96.74 -0.83 10.98 16 37 H 0.12 2.12 7.75 -2.39 -0.02 2.10 16 38 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.11 1.36 7.92 -2.39 -0.02 1.34 16 41 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 42 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 43 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 44 H 0.12 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -73.69 372.97 -1.47 -75.16 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.19 Total: 21.66 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 4.41 Total: -20.30 kcal Atomic # 7 Polarization: -125.60 SS G_CDS: -2.51 Total: -128.12 kcal Atomic # 8 Polarization: -96.36 SS G_CDS: -5.23 Total: -101.60 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: 107.88 SS G_CDS: -0.35 Total: 107.53 kcal Total: -73.69 -1.47 -75.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337873075.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.993 kcal (2) G-P(sol) polarization free energy of solvation -73.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds