Wall clock time and date at job start Sat Apr 11 2020 05:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 C 1.81401 * 102.99780 * 2 1 4 4 C 1.53001 * 109.47337 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47241 * 179.97438 * 4 3 2 6 6 H 1.08994 * 109.47269 * 55.00202 * 5 4 3 7 7 N 1.46491 * 109.47168 * 294.99612 * 5 4 3 8 8 C 1.34776 * 120.00056 * 85.00588 * 7 5 4 9 9 O 1.21701 * 120.00118 * 359.97438 * 8 7 5 10 10 C 1.46655 * 120.00436 * 180.02562 * 8 7 5 11 11 C 1.36545 * 125.99302 * 179.97438 * 10 8 7 12 12 C 1.40361 * 106.71054 * 179.97438 * 11 10 8 13 13 C 1.35129 * 107.11720 * 0.02562 * 12 11 10 14 14 O 1.33929 * 108.76538 * 359.75264 * 13 12 11 15 15 C 1.50702 * 109.46842 * 174.99958 * 5 4 3 16 16 O 1.21283 * 120.00262 * 120.00231 * 15 5 4 17 17 N 1.34777 * 119.99928 * 299.72137 * 15 5 4 18 18 C 1.46499 * 120.00199 * 180.27479 * 17 15 5 19 19 H 1.09001 * 109.46948 * 35.00281 * 18 17 15 20 20 C 1.52997 * 109.47288 * 275.00460 * 18 17 15 21 21 C 1.50700 * 109.47343 * 155.00212 * 18 17 15 22 22 H 1.07995 * 119.99741 * 0.02562 * 21 18 17 23 23 C 1.37875 * 119.99973 * 180.02562 * 21 18 17 24 24 N 1.31512 * 120.00332 * 0.02562 * 23 21 18 25 25 Si 1.86804 * 119.99735 * 179.97438 * 23 21 18 26 26 H 1.48499 * 109.46950 * 60.00390 * 25 23 21 27 27 H 1.48504 * 109.47038 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47332 * 299.99972 * 25 23 21 29 29 H 1.08996 * 109.46856 * 60.00044 * 1 2 3 30 30 H 1.09000 * 109.46630 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47048 * 300.00300 * 1 2 3 32 32 H 1.08997 * 109.47668 * 59.99655 * 3 2 1 33 33 H 1.09011 * 109.47114 * 300.00018 * 3 2 1 34 34 H 1.09003 * 109.46905 * 59.99819 * 4 3 2 35 35 H 1.09003 * 109.46563 * 299.99999 * 4 3 2 36 36 H 0.97003 * 120.00221 * 265.00067 * 7 5 4 37 37 H 1.08001 * 126.64019 * 359.97438 * 11 10 8 38 38 H 1.08005 * 126.44063 * 179.97438 * 12 11 10 39 39 H 1.07994 * 125.61683 * 179.97438 * 13 12 11 40 40 H 0.97000 * 120.00317 * 0.28382 * 17 15 5 41 41 H 1.09007 * 109.47320 * 179.97438 * 20 18 17 42 42 H 1.08993 * 109.47268 * 299.99834 * 20 18 17 43 43 H 1.09006 * 109.47495 * 60.00048 * 20 18 17 44 44 H 0.97002 * 120.00028 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9401 -0.0006 5 6 4.0864 3.4309 -0.0013 6 1 3.5942 3.9177 0.8405 7 7 3.6271 4.0375 -1.2531 8 6 2.3536 4.4636 -1.3680 9 8 1.5852 4.3440 -0.4319 10 6 1.8936 5.0704 -2.6213 11 6 0.6364 5.5413 -2.8708 12 6 0.6428 6.0318 -4.1859 13 6 1.8876 5.8406 -4.6757 14 8 2.6397 5.2658 -3.7283 15 6 5.5786 3.6020 0.1219 16 8 6.1975 4.1744 -0.7500 17 7 6.2247 3.1239 1.2038 18 6 7.6744 3.2955 1.3265 19 1 7.9647 4.2532 0.8945 20 6 8.3867 2.1638 0.5830 21 6 8.0627 3.2627 2.7822 22 1 7.3055 3.1271 3.5402 23 6 9.3848 3.4058 3.1464 24 7 10.3069 3.5714 2.2235 25 14 9.8660 3.3658 4.9510 26 1 9.4709 2.0611 5.5398 27 1 11.3356 3.5397 5.0753 28 1 9.1744 4.4642 5.6722 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8031 2.2372 0.8899 33 1 1.8031 2.2372 -0.8901 34 1 4.1609 1.4705 -0.8909 35 1 4.1616 1.4704 0.8892 36 1 4.2395 4.1326 -1.9993 37 1 -0.2006 5.5372 -2.1883 38 1 -0.1908 6.4773 -4.7085 39 1 2.2220 6.1105 -5.6664 40 1 5.7298 2.6660 1.9012 41 1 9.4654 2.2918 0.6740 42 1 8.0964 1.2061 1.0150 43 1 8.1059 2.1875 -0.4700 44 1 11.2371 3.6717 2.4797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338084985.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:27 Heat of formation + Delta-G solvation = -62.883828 kcal Electronic energy + Delta-G solvation = -27316.989986 eV Core-core repulsion = 23362.387561 eV Total energy + Delta-G solvation = -3954.602424 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.92393 -40.30874 -38.76673 -35.61760 -34.85578 -33.41196 -32.89997 -32.23215 -30.16385 -29.37270 -29.03462 -27.08239 -25.29239 -23.66069 -22.36330 -22.02535 -21.03404 -20.44690 -19.63770 -18.93335 -17.38812 -16.83229 -16.65290 -16.23628 -16.16870 -15.57120 -15.42671 -15.16085 -14.68688 -14.46619 -14.15831 -13.91589 -13.68818 -13.51553 -13.27482 -13.25804 -13.16729 -12.93795 -12.77241 -12.43284 -12.14566 -11.86711 -11.63690 -11.25781 -11.12708 -10.98579 -10.80904 -10.52089 -10.37595 -10.34320 -10.27027 -10.07947 -9.48903 -9.13739 -9.09411 -8.90730 -8.60093 -8.05874 -7.76860 -6.16171 -4.25918 0.81518 1.58264 2.07886 2.41574 2.51123 2.93034 2.98171 3.14178 3.24629 3.29856 3.31263 3.88620 4.32592 4.42288 4.61543 4.72065 4.79942 4.89265 4.96020 4.98384 5.01486 5.16516 5.26050 5.33748 5.35877 5.47801 5.52683 5.59742 5.62225 5.74387 6.01616 6.02639 6.15905 6.55956 6.76504 6.89125 7.07775 7.28850 7.34868 7.45678 7.63027 7.83367 7.88596 8.08907 8.50454 8.68252 8.93079 9.41426 10.89737 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010764 B = 0.003015 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.579273 B = 9285.706424 C =11105.972887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.275 6.275 3 C -0.072 4.072 4 C -0.111 4.111 5 C 0.129 3.871 6 H 0.117 0.883 7 N -0.694 5.694 8 C 0.604 3.396 9 O -0.523 6.523 10 C -0.076 4.076 11 C -0.122 4.122 12 C -0.228 4.228 13 C -0.004 4.004 14 O -0.160 6.160 15 C 0.501 3.499 16 O -0.547 6.547 17 N -0.698 5.698 18 C 0.265 3.735 19 H 0.050 0.950 20 C -0.147 4.147 21 C -0.537 4.537 22 H 0.062 0.938 23 C 0.068 3.932 24 N -0.883 5.883 25 Si 0.902 3.098 26 H -0.275 1.275 27 H -0.286 1.286 28 H -0.276 1.276 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.417 0.583 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.211 0.789 40 H 0.392 0.608 41 H 0.091 0.909 42 H 0.028 0.972 43 H 0.015 0.985 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.274 -0.601 -10.807 22.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.049 6.049 3 C -0.220 4.220 4 C -0.151 4.151 5 C 0.019 3.981 6 H 0.134 0.866 7 N -0.346 5.346 8 C 0.391 3.609 9 O -0.402 6.402 10 C -0.128 4.128 11 C -0.142 4.142 12 C -0.247 4.247 13 C -0.074 4.074 14 O -0.054 6.054 15 C 0.284 3.716 16 O -0.426 6.426 17 N -0.345 5.345 18 C 0.164 3.836 19 H 0.068 0.932 20 C -0.206 4.206 21 C -0.575 4.575 22 H 0.080 0.920 23 C -0.136 4.136 24 N -0.520 5.520 25 Si 0.730 3.270 26 H -0.201 1.201 27 H -0.211 1.211 28 H -0.201 1.201 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.255 0.745 37 H 0.178 0.822 38 H 0.174 0.826 39 H 0.227 0.773 40 H 0.225 0.775 41 H 0.110 0.890 42 H 0.047 0.953 43 H 0.034 0.966 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.114 -1.234 -10.760 21.969 hybrid contribution -0.719 0.978 0.794 1.451 sum -19.833 -0.256 -9.966 22.198 Atomic orbital electron populations 1.23320 0.94319 1.06092 1.04903 1.86882 1.07289 1.12581 1.98132 1.23542 0.99340 0.92881 1.06197 1.21735 0.93843 0.94434 1.05091 1.20982 0.94388 0.94106 0.88624 0.86562 1.45658 1.11560 1.60419 1.16988 1.16488 0.82269 0.77619 0.84555 1.90876 1.54776 1.57005 1.37510 1.22034 0.91954 1.10441 0.88343 1.21957 0.96666 0.98713 0.96900 1.21861 0.98851 1.08012 0.96004 1.24459 0.90543 0.98294 0.94119 1.84121 1.39509 1.61343 1.20454 1.20122 0.87901 0.80007 0.83581 1.90676 1.67959 1.43403 1.40587 1.46515 1.11773 1.55981 1.20240 1.18808 0.72615 0.96114 0.96073 0.93221 1.22083 1.04549 0.97955 0.96003 1.21164 0.93265 1.52064 0.90998 0.91983 1.24876 0.96202 0.94521 0.97999 1.69885 1.01403 1.48079 1.32677 0.86493 0.77451 0.78691 0.84398 1.20077 1.21122 1.20135 0.90735 0.88339 0.90484 0.89095 0.89853 0.89913 0.88837 0.74506 0.82249 0.82593 0.77296 0.77523 0.89041 0.95267 0.96628 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 10.76 101.05 1.09 0.03 16 2 S -0.27 -3.32 22.38 -107.50 -2.41 -5.73 16 3 C -0.07 -0.87 4.54 37.16 0.17 -0.71 16 4 C -0.11 -1.42 4.84 -26.73 -0.13 -1.55 16 5 C 0.13 1.85 2.67 -69.09 -0.18 1.67 16 6 H 0.12 1.62 7.58 -51.93 -0.39 1.22 16 7 N -0.69 -9.59 4.90 -56.26 -0.28 -9.86 16 8 C 0.60 8.17 6.35 -12.86 -0.08 8.09 16 9 O -0.52 -7.72 14.00 5.19 0.07 -7.65 16 10 C -0.08 -0.91 7.13 -36.80 -0.26 -1.17 16 11 C -0.12 -1.25 10.62 -39.39 -0.42 -1.66 16 12 C -0.23 -1.81 10.87 -39.89 -0.43 -2.25 16 13 C 0.00 -0.03 12.08 29.63 0.36 0.33 16 14 O -0.16 -1.77 10.40 4.98 0.05 -1.72 16 15 C 0.50 9.27 7.18 -10.98 -0.08 9.19 16 16 O -0.55 -12.03 15.50 5.55 0.09 -11.95 16 17 N -0.70 -13.66 4.93 -54.93 -0.27 -13.93 16 18 C 0.27 6.50 2.56 -69.08 -0.18 6.32 16 19 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 20 C -0.15 -3.54 9.26 37.16 0.34 -3.20 16 21 C -0.54 -13.86 8.73 -34.44 -0.30 -14.16 16 22 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 23 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 24 N -0.88 -24.46 11.32 55.43 0.63 -23.83 16 25 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.09 1.13 7.84 -51.93 -0.41 0.72 16 33 H 0.08 1.07 5.64 -51.92 -0.29 0.78 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.09 1.16 7.44 -51.93 -0.39 0.77 16 36 H 0.42 5.87 7.55 -40.82 -0.31 5.57 16 37 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.16 0.81 8.06 -52.48 -0.42 0.39 16 39 H 0.21 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.39 6.63 7.91 -40.82 -0.32 6.31 16 41 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 383.86 15.07 5.78 5.78 Total: -1.00 -31.11 383.86 -7.72 -38.83 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -6.17 Total: 12.07 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -0.20 Total: 2.62 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.08 Total: -47.62 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: 0.21 Total: -21.31 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: -3.32 SS G_CDS: -2.41 Total: -5.73 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.11 -7.72 -38.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338084985.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.055 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds