Wall clock time and date at job start Sat Apr 11 2020 05:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 C 1.81401 * 102.99780 * 2 1 4 4 C 1.53001 * 109.47337 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47241 * 179.97438 * 4 3 2 6 6 H 1.08994 * 109.47269 * 55.00202 * 5 4 3 7 7 N 1.46491 * 109.47168 * 294.99612 * 5 4 3 8 8 C 1.34776 * 120.00056 * 85.00588 * 7 5 4 9 9 O 1.21701 * 120.00118 * 359.97438 * 8 7 5 10 10 C 1.46655 * 120.00436 * 180.02562 * 8 7 5 11 11 C 1.36545 * 125.99302 * 179.97438 * 10 8 7 12 12 C 1.40361 * 106.71054 * 179.97438 * 11 10 8 13 13 C 1.35129 * 107.11720 * 0.02562 * 12 11 10 14 14 O 1.33929 * 108.76538 * 359.75264 * 13 12 11 15 15 C 1.50702 * 109.46842 * 174.99958 * 5 4 3 16 16 O 1.21283 * 120.00262 * 120.00231 * 15 5 4 17 17 N 1.34777 * 119.99928 * 299.72137 * 15 5 4 18 18 C 1.46499 * 120.00199 * 180.27479 * 17 15 5 19 19 H 1.09001 * 109.46948 * 35.00281 * 18 17 15 20 20 C 1.52997 * 109.47288 * 275.00460 * 18 17 15 21 21 C 1.50700 * 109.47343 * 155.00212 * 18 17 15 22 22 H 1.07995 * 119.99741 * 0.02562 * 21 18 17 23 23 C 1.37875 * 119.99973 * 180.02562 * 21 18 17 24 24 N 1.31512 * 120.00332 * 0.02562 * 23 21 18 25 25 Si 1.86804 * 119.99735 * 179.97438 * 23 21 18 26 26 H 1.48499 * 109.46950 * 60.00390 * 25 23 21 27 27 H 1.48504 * 109.47038 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47332 * 299.99972 * 25 23 21 29 29 H 1.08996 * 109.46856 * 60.00044 * 1 2 3 30 30 H 1.09000 * 109.46630 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47048 * 300.00300 * 1 2 3 32 32 H 1.08997 * 109.47668 * 59.99655 * 3 2 1 33 33 H 1.09011 * 109.47114 * 300.00018 * 3 2 1 34 34 H 1.09003 * 109.46905 * 59.99819 * 4 3 2 35 35 H 1.09003 * 109.46563 * 299.99999 * 4 3 2 36 36 H 0.97003 * 120.00221 * 265.00067 * 7 5 4 37 37 H 1.08001 * 126.64019 * 359.97438 * 11 10 8 38 38 H 1.08005 * 126.44063 * 179.97438 * 12 11 10 39 39 H 1.07994 * 125.61683 * 179.97438 * 13 12 11 40 40 H 0.97000 * 120.00317 * 0.28382 * 17 15 5 41 41 H 1.09007 * 109.47320 * 179.97438 * 20 18 17 42 42 H 1.08993 * 109.47268 * 299.99834 * 20 18 17 43 43 H 1.09006 * 109.47495 * 60.00048 * 20 18 17 44 44 H 0.97002 * 120.00028 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9401 -0.0006 5 6 4.0864 3.4309 -0.0013 6 1 3.5942 3.9177 0.8405 7 7 3.6271 4.0375 -1.2531 8 6 2.3536 4.4636 -1.3680 9 8 1.5852 4.3440 -0.4319 10 6 1.8936 5.0704 -2.6213 11 6 0.6364 5.5413 -2.8708 12 6 0.6428 6.0318 -4.1859 13 6 1.8876 5.8406 -4.6757 14 8 2.6397 5.2658 -3.7283 15 6 5.5786 3.6020 0.1219 16 8 6.1975 4.1744 -0.7500 17 7 6.2247 3.1239 1.2038 18 6 7.6744 3.2955 1.3265 19 1 7.9647 4.2532 0.8945 20 6 8.3867 2.1638 0.5830 21 6 8.0627 3.2627 2.7822 22 1 7.3055 3.1271 3.5402 23 6 9.3848 3.4058 3.1464 24 7 10.3069 3.5714 2.2235 25 14 9.8660 3.3658 4.9510 26 1 9.4709 2.0611 5.5398 27 1 11.3356 3.5397 5.0753 28 1 9.1744 4.4642 5.6722 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8031 2.2372 0.8899 33 1 1.8031 2.2372 -0.8901 34 1 4.1609 1.4705 -0.8909 35 1 4.1616 1.4704 0.8892 36 1 4.2395 4.1326 -1.9993 37 1 -0.2006 5.5372 -2.1883 38 1 -0.1908 6.4773 -4.7085 39 1 2.2220 6.1105 -5.6664 40 1 5.7298 2.6660 1.9012 41 1 9.4654 2.2918 0.6740 42 1 8.0964 1.2061 1.0150 43 1 8.1059 2.1875 -0.4700 44 1 11.2371 3.6717 2.4797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338084985.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:26 Heat of formation + Delta-G solvation = -83.754816 kcal Electronic energy + Delta-G solvation = -27317.895019 eV Core-core repulsion = 23362.387561 eV Total energy + Delta-G solvation = -3955.507458 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.66677 -41.55820 -40.15157 -37.02351 -36.47699 -34.53101 -34.08448 -33.61914 -31.19786 -30.86070 -29.82434 -28.32354 -27.32095 -24.58271 -23.72964 -22.78050 -22.47376 -21.43675 -21.18612 -20.05049 -18.80540 -17.94198 -17.76035 -17.44854 -17.04492 -16.99231 -16.84294 -16.55817 -15.97580 -15.81296 -15.39550 -15.11222 -14.75506 -14.47103 -14.32183 -14.29926 -14.16434 -13.95689 -13.81808 -13.67884 -13.56437 -13.25648 -13.03399 -12.86720 -12.72529 -12.71127 -12.31570 -12.25197 -12.15411 -11.56564 -11.11954 -11.07050 -11.00186 -10.91926 -10.59889 -10.33152 -9.83951 -9.68378 -8.71558 -8.17577 -6.34754 -0.01253 0.67991 1.40594 1.46043 1.47614 1.53736 1.55878 1.59658 1.65524 1.98587 2.04442 2.35943 2.54394 3.13254 3.50351 3.69065 3.79282 3.84205 3.95376 4.03125 4.08391 4.18881 4.30749 4.34930 4.55423 4.61890 4.68370 4.76210 4.86179 4.88908 4.92545 4.93787 4.97911 5.05540 5.09740 5.39301 5.41500 5.56269 5.66875 5.81493 5.87530 6.09053 6.28244 6.71191 6.76834 6.87567 7.27285 7.42551 8.88360 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010764 B = 0.003015 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.579273 B = 9285.706424 C =11105.972887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.310 6.310 3 C -0.057 4.057 4 C -0.104 4.104 5 C 0.146 3.854 6 H 0.125 0.875 7 N -0.698 5.698 8 C 0.606 3.394 9 O -0.541 6.541 10 C -0.114 4.114 11 C -0.117 4.117 12 C -0.232 4.232 13 C 0.007 3.993 14 O -0.178 6.178 15 C 0.502 3.498 16 O -0.584 6.584 17 N -0.693 5.693 18 C 0.273 3.727 19 H 0.003 0.997 20 C -0.134 4.134 21 C -0.549 4.549 22 H 0.074 0.926 23 C 0.017 3.983 24 N -0.916 5.916 25 Si 0.970 3.030 26 H -0.264 1.264 27 H -0.287 1.287 28 H -0.271 1.271 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.415 0.585 37 H 0.166 0.834 38 H 0.187 0.813 39 H 0.251 0.749 40 H 0.407 0.593 41 H 0.067 0.933 42 H 0.041 0.959 43 H 0.015 0.985 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.488 -0.822 -10.825 24.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 S -0.084 6.084 3 C -0.205 4.205 4 C -0.144 4.144 5 C 0.036 3.964 6 H 0.142 0.858 7 N -0.350 5.350 8 C 0.394 3.606 9 O -0.421 6.421 10 C -0.166 4.166 11 C -0.137 4.137 12 C -0.251 4.251 13 C -0.062 4.062 14 O -0.073 6.073 15 C 0.287 3.713 16 O -0.465 6.465 17 N -0.342 5.342 18 C 0.169 3.831 19 H 0.021 0.979 20 C -0.193 4.193 21 C -0.587 4.587 22 H 0.092 0.908 23 C -0.184 4.184 24 N -0.554 5.554 25 Si 0.794 3.206 26 H -0.189 1.189 27 H -0.212 1.212 28 H -0.196 1.196 29 H 0.099 0.901 30 H 0.133 0.867 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.252 0.748 37 H 0.183 0.817 38 H 0.204 0.796 39 H 0.267 0.733 40 H 0.243 0.757 41 H 0.085 0.915 42 H 0.060 0.940 43 H 0.034 0.966 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.375 -1.469 -10.769 23.979 hybrid contribution -0.118 1.106 0.654 1.290 sum -21.493 -0.364 -10.115 23.757 Atomic orbital electron populations 1.23392 0.91185 1.07428 1.05582 1.86979 1.10817 1.12415 1.98201 1.23338 0.98438 0.92933 1.05778 1.21671 0.94599 0.92959 1.05128 1.20775 0.90754 0.95464 0.89440 0.85751 1.45671 1.11909 1.60877 1.16521 1.16668 0.81680 0.77078 0.85138 1.90846 1.55009 1.57871 1.38379 1.21814 0.92903 1.13268 0.88606 1.22263 0.96007 0.97395 0.98067 1.22240 0.99945 1.07855 0.95032 1.25408 0.90313 0.95820 0.94657 1.84111 1.40332 1.62091 1.20815 1.20753 0.89591 0.78563 0.82361 1.90657 1.69334 1.44735 1.41753 1.46219 1.10148 1.56543 1.21296 1.18387 0.75294 0.93907 0.95477 0.97936 1.21900 1.02920 0.98395 0.96076 1.21519 0.93769 1.51694 0.91725 0.90765 1.25751 0.96270 0.94110 1.02222 1.70034 1.01657 1.48982 1.34754 0.85434 0.76850 0.79099 0.79190 1.18896 1.21249 1.19644 0.90146 0.86656 0.89711 0.89131 0.90551 0.90493 0.88184 0.74781 0.81671 0.79601 0.73288 0.75721 0.91472 0.93983 0.96605 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 10.76 113.37 1.22 -0.50 16 2 S -0.31 -7.16 22.38 -56.49 -1.26 -8.43 16 3 C -0.06 -1.35 4.54 71.98 0.33 -1.02 16 4 C -0.10 -2.62 4.84 30.59 0.15 -2.47 16 5 C 0.15 4.19 2.67 44.25 0.12 4.31 16 6 H 0.12 3.42 7.58 -2.39 -0.02 3.40 16 7 N -0.70 -19.63 4.90 -450.12 -2.21 -21.83 16 8 C 0.61 16.47 6.35 86.44 0.55 17.02 16 9 O -0.54 -15.87 14.00 -4.35 -0.06 -15.93 16 10 C -0.11 -2.72 7.13 24.07 0.17 -2.54 16 11 C -0.12 -2.23 10.62 22.39 0.24 -1.99 16 12 C -0.23 -3.06 10.87 22.07 0.24 -2.82 16 13 C 0.01 0.10 12.08 67.10 0.81 0.91 16 14 O -0.18 -3.80 10.40 -5.09 -0.05 -3.86 16 15 C 0.50 18.97 7.18 87.66 0.63 19.60 16 16 O -0.58 -26.62 15.50 -3.04 -0.05 -26.67 16 17 N -0.69 -27.42 4.93 -446.10 -2.20 -29.62 16 18 C 0.27 13.70 2.56 44.24 0.11 13.81 16 19 H 0.00 0.16 7.58 -2.39 -0.02 0.14 16 20 C -0.13 -6.61 9.26 71.98 0.67 -5.94 16 21 C -0.55 -28.45 8.73 25.60 0.22 -28.22 16 22 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 23 C 0.02 0.89 5.30 84.65 0.45 1.34 16 24 N -0.92 -51.83 11.32 21.45 0.24 -51.59 16 25 Si 0.97 41.58 29.54 68.60 2.03 43.61 16 26 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 27 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 28 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.09 2.16 7.84 -2.39 -0.02 2.14 16 33 H 0.08 1.94 5.64 -2.38 -0.01 1.92 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.10 2.39 7.44 -2.39 -0.02 2.37 16 36 H 0.41 12.11 7.55 -92.71 -0.70 11.41 16 37 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 38 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16 39 H 0.25 0.84 8.06 -2.91 -0.02 0.82 16 40 H 0.41 13.55 7.91 -92.71 -0.73 12.81 16 41 H 0.07 3.65 6.07 -2.38 -0.01 3.63 16 42 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.01 0.72 8.14 -2.38 -0.02 0.71 16 44 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -68.88 383.86 1.95 -66.93 By element: Atomic # 1 Polarization: 36.31 SS G_CDS: -0.39 Total: 35.92 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 5.90 Total: 11.46 kcal Atomic # 7 Polarization: -98.87 SS G_CDS: -4.16 Total: -103.04 kcal Atomic # 8 Polarization: -46.29 SS G_CDS: -0.16 Total: -46.46 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Atomic # 16 Polarization: -7.16 SS G_CDS: -1.26 Total: -8.43 kcal Total: -68.88 1.95 -66.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338084985.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.825 kcal (2) G-P(sol) polarization free energy of solvation -68.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds