Wall clock time and date at job start Sat Apr 11 2020 05:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46503 * 109.46826 * 2 1 4 4 C 1.46496 * 120.00029 * 277.90122 * 3 2 1 5 5 C 1.52998 * 109.47507 * 270.00332 * 4 3 2 6 6 C 1.34772 * 119.99507 * 97.90944 * 3 2 1 7 7 O 1.21557 * 119.99895 * 186.20732 * 6 3 2 8 8 C 1.47845 * 120.00356 * 6.20691 * 6 3 2 9 9 C 1.39594 * 120.14606 * 314.84871 * 8 6 3 10 10 C 1.37929 * 119.85867 * 180.27732 * 9 8 6 11 11 C 1.38392 * 120.14192 * 359.50943 * 10 9 8 12 12 C 1.50698 * 119.85535 * 180.23594 * 11 10 9 13 13 C 1.38331 * 120.29034 * 0.47178 * 11 10 9 14 14 S 1.76197 * 119.92915 * 179.76687 * 13 11 10 15 15 O 1.42106 * 106.40621 * 178.60457 * 14 13 11 16 16 O 1.42103 * 106.40059 * 311.52204 * 14 13 11 17 17 N 1.65599 * 107.22085 * 65.06235 * 14 13 11 18 18 C 1.36939 * 119.99604 * 63.86476 * 17 14 13 19 19 H 1.07998 * 120.00330 * 5.11118 * 18 17 14 20 20 C 1.38818 * 119.99852 * 185.10590 * 18 17 14 21 21 N 1.31623 * 119.99642 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00004 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46811 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47184 * 120.00193 * 22 20 18 25 25 H 1.48500 * 109.46779 * 240.00143 * 22 20 18 26 26 C 1.37984 * 120.14518 * 359.78794 * 13 11 10 27 27 H 1.09000 * 109.46983 * 191.12613 * 1 2 3 28 28 H 1.08999 * 109.46829 * 311.12627 * 1 2 3 29 29 H 1.09004 * 109.47165 * 71.12640 * 1 2 3 30 30 H 1.08997 * 109.46779 * 240.00378 * 2 1 3 31 31 H 1.08997 * 109.47188 * 120.00436 * 2 1 3 32 32 H 1.08997 * 109.47357 * 30.00742 * 4 3 2 33 33 H 1.09006 * 109.46736 * 150.00460 * 4 3 2 34 34 H 1.08998 * 109.46709 * 60.00267 * 5 4 3 35 35 H 1.09003 * 109.47185 * 180.02562 * 5 4 3 36 36 H 1.09006 * 109.47269 * 300.00332 * 5 4 3 37 37 H 1.08011 * 120.07051 * 359.97438 * 9 8 6 38 38 H 1.08001 * 119.93515 * 179.74971 * 10 9 8 39 39 H 1.09005 * 109.46726 * 272.66832 * 12 11 10 40 40 H 1.09001 * 109.46880 * 32.65919 * 12 11 10 41 41 H 1.08994 * 109.47204 * 152.66872 * 12 11 10 42 42 H 0.97001 * 120.00197 * 243.87242 * 17 14 13 43 43 H 0.97000 * 119.99342 * 179.97438 * 21 20 18 44 44 H 1.08009 * 120.07222 * 180.02562 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.0980 2.1300 -1.2566 5 6 3.4728 1.9145 -1.8925 6 6 2.3943 1.9630 1.1561 7 8 2.6918 3.1414 1.1749 8 6 2.4450 1.1679 2.4015 9 6 1.3964 0.3054 2.7258 10 6 1.4472 -0.4293 3.8920 11 6 2.5394 -0.3204 4.7349 12 6 2.5906 -1.1301 6.0049 13 6 3.5820 0.5321 4.4194 14 16 4.9651 0.6679 5.5025 15 8 5.8648 1.5829 4.8919 16 8 4.4356 0.8529 6.8081 17 7 5.7274 -0.8021 5.5110 18 6 6.2965 -1.2849 4.3629 19 1 6.3211 -0.6726 3.4735 20 6 6.8419 -2.5613 4.3421 21 7 6.8116 -3.3076 5.4259 22 14 7.6189 -3.2195 2.7761 23 1 7.5252 -2.1926 1.7075 24 1 9.0461 -3.5423 3.0294 25 1 6.9024 -4.4472 2.3463 26 6 3.5412 1.2767 3.2584 27 1 -0.3633 -1.0084 0.1983 28 1 -0.3633 0.6759 0.7741 29 1 -0.3634 0.3324 -0.9724 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.3234 1.7792 -1.9384 33 1 1.9526 3.1917 -1.0568 34 1 3.6182 0.8529 -2.0923 35 1 3.5322 2.4719 -2.8273 36 1 4.2476 2.2654 -1.2107 37 1 0.5448 0.2172 2.0672 38 1 0.6347 -1.0940 4.1461 39 1 2.0944 -0.5817 6.8057 40 1 2.0842 -2.0827 5.8490 41 1 3.6299 -1.3115 6.2785 42 1 5.7707 -1.3213 6.3293 43 1 7.1924 -4.1995 5.4112 44 1 4.3561 1.9417 3.0129 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339118761.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:51 Heat of formation + Delta-G solvation = -76.771879 kcal Electronic energy + Delta-G solvation = -28596.630038 eV Core-core repulsion = 24641.425383 eV Total energy + Delta-G solvation = -3955.204655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 3.29 seconds Orbital eigenvalues (eV) -40.50524 -38.44878 -36.35110 -36.14230 -34.78503 -34.72061 -33.24385 -31.93360 -31.04077 -30.79533 -29.80077 -27.18652 -24.60243 -23.90924 -23.61950 -22.89271 -21.60085 -19.66311 -18.40941 -18.20918 -17.55028 -16.78710 -16.48188 -15.92236 -15.68065 -15.32215 -14.96109 -14.61884 -14.24929 -14.14761 -13.90519 -13.76766 -13.60970 -13.40509 -13.32243 -12.90184 -12.76091 -12.32942 -12.17842 -12.06254 -11.85826 -11.81835 -11.56709 -11.38292 -11.34231 -11.30592 -11.14018 -11.12294 -11.00130 -10.85775 -10.58690 -10.40125 -10.05689 -9.96269 -9.70077 -8.98860 -8.85123 -8.50425 -8.35935 -6.57957 -3.98863 0.99792 1.35684 1.56822 2.70904 2.89337 3.11182 3.18089 3.22167 3.71556 4.00528 4.38283 4.43324 4.64163 4.72291 4.82550 4.90112 4.93068 5.01476 5.04224 5.15315 5.17817 5.21997 5.28097 5.39006 5.41897 5.52143 5.61689 5.63802 5.77010 5.81216 5.86555 5.92912 5.99669 6.05927 6.08531 6.34156 6.35940 6.41093 6.48288 6.62799 6.99677 7.03734 7.25878 7.39110 8.13682 8.57842 8.69167 9.14261 10.57308 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010513 B = 0.004581 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.650157 B = 6110.156166 C = 7029.505246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.090 3.910 3 N -0.611 5.611 4 C 0.112 3.888 5 C -0.170 4.170 6 C 0.567 3.433 7 O -0.532 6.532 8 C -0.169 4.169 9 C -0.065 4.065 10 C -0.154 4.154 11 C 0.044 3.956 12 C -0.141 4.141 13 C -0.663 4.663 14 S 2.603 3.397 15 O -0.973 6.973 16 O -0.999 6.999 17 N -0.945 5.945 18 C -0.267 4.267 19 H 0.105 0.895 20 C 0.033 3.967 21 N -0.871 5.871 22 Si 0.921 3.079 23 H -0.266 1.266 24 H -0.277 1.277 25 H -0.279 1.279 26 C 0.029 3.971 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.138 0.862 38 H 0.130 0.870 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.412 0.588 43 H 0.275 0.725 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.589 0.251 -10.641 16.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.033 4.033 3 N -0.344 5.344 4 C -0.011 4.011 5 C -0.228 4.228 6 C 0.356 3.644 7 O -0.409 6.409 8 C -0.173 4.173 9 C -0.083 4.083 10 C -0.173 4.173 11 C 0.043 3.957 12 C -0.197 4.197 13 C -0.742 4.742 14 S 2.694 3.306 15 O -0.963 6.963 16 O -0.987 6.987 17 N -0.697 5.697 18 C -0.409 4.409 19 H 0.122 0.878 20 C -0.175 4.175 21 N -0.513 5.513 22 Si 0.747 3.253 23 H -0.190 1.190 24 H -0.203 1.203 25 H -0.205 1.205 26 C 0.009 3.991 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.156 0.844 38 H 0.148 0.852 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.248 0.752 43 H 0.085 0.915 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.290 1.723 -10.261 16.103 hybrid contribution -0.247 -1.182 -1.063 1.609 sum -12.537 0.541 -11.324 16.903 Atomic orbital electron populations 1.22347 0.95890 1.02688 1.02514 1.21889 0.94293 0.82644 1.04479 1.47914 1.65221 1.14321 1.06984 1.21401 0.97524 0.97842 0.84304 1.22151 0.97698 1.02008 1.00929 1.18442 0.76040 0.86683 0.83201 1.90771 1.48531 1.15591 1.86022 1.19814 0.98523 1.02055 0.96860 1.21809 0.97367 0.92743 0.96397 1.21036 0.98972 1.02074 0.95180 1.19711 0.91039 0.90604 0.94354 1.21229 1.04989 0.99211 0.94314 1.31955 1.21161 1.06641 1.14446 1.07121 0.73572 0.76302 0.73567 1.93461 1.61990 1.62722 1.78103 1.93432 1.80025 1.86640 1.38645 1.51805 1.57741 1.42908 1.17254 1.19421 1.30831 0.99128 0.91497 0.87753 1.25287 0.98420 0.95513 0.98298 1.69697 1.43567 1.10518 1.27497 0.85940 0.78989 0.79040 0.81334 1.18977 1.20312 1.20511 1.20921 0.95664 0.92870 0.89646 0.90948 0.91808 0.92079 0.90336 0.88598 0.90676 0.89729 0.92477 0.91595 0.91972 0.84441 0.85201 0.89207 0.90502 0.90121 0.75183 0.91482 0.83915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 9.06 37.16 0.34 -0.95 16 2 C 0.09 0.86 5.59 -4.04 -0.02 0.84 16 3 N -0.61 -7.57 2.48 -174.80 -0.43 -8.00 16 4 C 0.11 1.16 6.19 -4.04 -0.03 1.13 16 5 C -0.17 -1.72 10.24 37.16 0.38 -1.34 16 6 C 0.57 9.31 7.28 -12.33 -0.09 9.22 16 7 O -0.53 -10.44 16.54 5.32 0.09 -10.35 16 8 C -0.17 -2.85 5.11 -104.97 -0.54 -3.39 16 9 C -0.06 -0.90 7.40 -39.19 -0.29 -1.19 16 10 C -0.15 -2.21 9.69 -39.64 -0.38 -2.60 16 11 C 0.04 0.78 5.88 -104.53 -0.61 0.16 16 12 C -0.14 -2.30 8.79 36.00 0.32 -1.99 16 13 C -0.66 -13.30 5.79 -39.64 -0.23 -13.53 16 14 S 2.60 58.60 4.89 -107.50 -0.53 58.07 16 15 O -0.97 -24.38 16.68 -57.17 -0.95 -25.33 16 16 O -1.00 -23.27 16.39 -57.17 -0.94 -24.21 16 17 N -0.95 -22.05 4.62 31.50 0.15 -21.90 16 18 C -0.27 -6.55 9.63 -15.06 -0.15 -6.69 16 19 H 0.10 2.51 7.81 -52.49 -0.41 2.10 16 20 C 0.03 0.81 5.50 -17.43 -0.10 0.71 16 21 N -0.87 -21.86 13.06 55.49 0.72 -21.14 16 22 Si 0.92 19.00 29.55 -169.99 -5.02 13.98 16 23 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 26 C 0.03 0.57 9.19 -39.18 -0.36 0.21 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.52 6.53 -51.93 -0.34 0.18 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.63 8.13 -51.93 -0.42 0.21 16 31 H 0.10 1.04 5.01 -51.93 -0.26 0.78 16 32 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 33 H 0.08 0.99 7.35 -51.93 -0.38 0.61 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.14 1.46 3.76 -52.48 -0.20 1.26 16 38 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 41 H 0.08 1.49 4.92 -51.93 -0.26 1.23 16 42 H 0.41 9.58 7.65 -34.47 -0.26 9.31 16 43 H 0.28 6.49 8.31 -40.82 -0.34 6.15 16 44 H 0.14 2.93 7.33 -52.48 -0.38 2.54 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -31.71 370.76 -8.93 -40.65 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -5.85 Total: 12.05 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -1.76 Total: -19.41 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: 0.44 Total: -51.04 kcal Atomic # 8 Polarization: -58.09 SS G_CDS: -1.80 Total: -59.89 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.98 kcal Atomic # 16 Polarization: 58.60 SS G_CDS: -0.53 Total: 58.07 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.71 -8.93 -40.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339118761.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.127 kcal (2) G-P(sol) polarization free energy of solvation -31.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.29 seconds