Wall clock time and date at job start Sat Apr 11 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46503 * 109.46826 * 2 1 4 4 C 1.46496 * 120.00029 * 277.90122 * 3 2 1 5 5 C 1.52998 * 109.47507 * 270.00332 * 4 3 2 6 6 C 1.34772 * 119.99507 * 97.90944 * 3 2 1 7 7 O 1.21557 * 119.99895 * 186.20732 * 6 3 2 8 8 C 1.47845 * 120.00356 * 6.20691 * 6 3 2 9 9 C 1.39594 * 120.14606 * 314.84871 * 8 6 3 10 10 C 1.37929 * 119.85867 * 180.27732 * 9 8 6 11 11 C 1.38392 * 120.14192 * 359.50943 * 10 9 8 12 12 C 1.50698 * 119.85535 * 180.23594 * 11 10 9 13 13 C 1.38331 * 120.29034 * 0.47178 * 11 10 9 14 14 S 1.76197 * 119.92915 * 179.76687 * 13 11 10 15 15 O 1.42106 * 106.40621 * 178.60457 * 14 13 11 16 16 O 1.42103 * 106.40059 * 311.52204 * 14 13 11 17 17 N 1.65599 * 107.22085 * 65.06235 * 14 13 11 18 18 C 1.36939 * 119.99604 * 63.86476 * 17 14 13 19 19 H 1.07998 * 120.00330 * 5.11118 * 18 17 14 20 20 C 1.38818 * 119.99852 * 185.10590 * 18 17 14 21 21 N 1.31623 * 119.99642 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00004 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46811 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47184 * 120.00193 * 22 20 18 25 25 H 1.48500 * 109.46779 * 240.00143 * 22 20 18 26 26 C 1.37984 * 120.14518 * 359.78794 * 13 11 10 27 27 H 1.09000 * 109.46983 * 191.12613 * 1 2 3 28 28 H 1.08999 * 109.46829 * 311.12627 * 1 2 3 29 29 H 1.09004 * 109.47165 * 71.12640 * 1 2 3 30 30 H 1.08997 * 109.46779 * 240.00378 * 2 1 3 31 31 H 1.08997 * 109.47188 * 120.00436 * 2 1 3 32 32 H 1.08997 * 109.47357 * 30.00742 * 4 3 2 33 33 H 1.09006 * 109.46736 * 150.00460 * 4 3 2 34 34 H 1.08998 * 109.46709 * 60.00267 * 5 4 3 35 35 H 1.09003 * 109.47185 * 180.02562 * 5 4 3 36 36 H 1.09006 * 109.47269 * 300.00332 * 5 4 3 37 37 H 1.08011 * 120.07051 * 359.97438 * 9 8 6 38 38 H 1.08001 * 119.93515 * 179.74971 * 10 9 8 39 39 H 1.09005 * 109.46726 * 272.66832 * 12 11 10 40 40 H 1.09001 * 109.46880 * 32.65919 * 12 11 10 41 41 H 1.08994 * 109.47204 * 152.66872 * 12 11 10 42 42 H 0.97001 * 120.00197 * 243.87242 * 17 14 13 43 43 H 0.97000 * 119.99342 * 179.97438 * 21 20 18 44 44 H 1.08009 * 120.07222 * 180.02562 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.0980 2.1300 -1.2566 5 6 3.4728 1.9145 -1.8925 6 6 2.3943 1.9630 1.1561 7 8 2.6918 3.1414 1.1749 8 6 2.4450 1.1679 2.4015 9 6 1.3964 0.3054 2.7258 10 6 1.4472 -0.4293 3.8920 11 6 2.5394 -0.3204 4.7349 12 6 2.5906 -1.1301 6.0049 13 6 3.5820 0.5321 4.4194 14 16 4.9651 0.6679 5.5025 15 8 5.8648 1.5829 4.8919 16 8 4.4356 0.8529 6.8081 17 7 5.7274 -0.8021 5.5110 18 6 6.2965 -1.2849 4.3629 19 1 6.3211 -0.6726 3.4735 20 6 6.8419 -2.5613 4.3421 21 7 6.8116 -3.3076 5.4259 22 14 7.6189 -3.2195 2.7761 23 1 7.5252 -2.1926 1.7075 24 1 9.0461 -3.5423 3.0294 25 1 6.9024 -4.4472 2.3463 26 6 3.5412 1.2767 3.2584 27 1 -0.3633 -1.0084 0.1983 28 1 -0.3633 0.6759 0.7741 29 1 -0.3634 0.3324 -0.9724 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.3234 1.7792 -1.9384 33 1 1.9526 3.1917 -1.0568 34 1 3.6182 0.8529 -2.0923 35 1 3.5322 2.4719 -2.8273 36 1 4.2476 2.2654 -1.2107 37 1 0.5448 0.2172 2.0672 38 1 0.6347 -1.0940 4.1461 39 1 2.0944 -0.5817 6.8057 40 1 2.0842 -2.0827 5.8490 41 1 3.6299 -1.3115 6.2785 42 1 5.7707 -1.3213 6.3293 43 1 7.1924 -4.1995 5.4112 44 1 4.3561 1.9417 3.0129 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339118761.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:45 Heat of formation + Delta-G solvation = -98.561930 kcal Electronic energy + Delta-G solvation = -28597.574925 eV Core-core repulsion = 24641.425383 eV Total energy + Delta-G solvation = -3956.149543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 5.43 seconds Orbital eigenvalues (eV) -41.70635 -39.74811 -38.11826 -37.43480 -36.72086 -36.57064 -34.41136 -33.04664 -32.80020 -32.06398 -30.71576 -28.43238 -26.44811 -24.91767 -24.50045 -24.21397 -22.84037 -20.96591 -20.15203 -19.90531 -18.89502 -18.28587 -17.86240 -17.24128 -17.01424 -16.76058 -16.39658 -16.20018 -15.80383 -15.34869 -15.26864 -15.00070 -14.81710 -14.68286 -14.43271 -13.90007 -13.85873 -13.49939 -13.33882 -13.22691 -13.17406 -13.09771 -13.02102 -12.97786 -12.89548 -12.79806 -12.73023 -12.51964 -12.32843 -12.14404 -12.05646 -11.96837 -11.80405 -11.50807 -11.06836 -10.34568 -10.16676 -9.95679 -9.74469 -8.35473 -5.89966 -0.41182 -0.22055 -0.00618 1.45412 1.45787 1.48973 1.59461 1.86195 2.24029 2.40894 2.65225 2.90409 3.19486 3.28197 3.59869 3.71807 3.78489 3.86892 4.02723 4.10820 4.17153 4.28586 4.38185 4.44296 4.45344 4.51557 4.58710 4.71172 4.73508 4.77378 4.84327 4.93042 4.99491 5.01481 5.06259 5.07496 5.15875 5.22709 5.27966 5.37182 5.52770 5.60079 5.73473 6.19457 6.74501 6.89271 6.95282 7.31376 8.82091 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010513 B = 0.004581 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.650157 B = 6110.156166 C = 7029.505246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.079 3.921 3 N -0.600 5.600 4 C 0.107 3.893 5 C -0.166 4.166 6 C 0.559 3.441 7 O -0.579 6.579 8 C -0.174 4.174 9 C -0.040 4.040 10 C -0.139 4.139 11 C 0.034 3.966 12 C -0.147 4.147 13 C -0.683 4.683 14 S 2.651 3.349 15 O -1.007 7.007 16 O -1.004 7.004 17 N -0.962 5.962 18 C -0.305 4.305 19 H 0.095 0.905 20 C -0.005 4.005 21 N -0.913 5.913 22 Si 0.976 3.024 23 H -0.266 1.266 24 H -0.279 1.279 25 H -0.268 1.268 26 C 0.004 3.996 27 H 0.095 0.905 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.025 0.975 37 H 0.180 0.820 38 H 0.181 0.819 39 H 0.101 0.899 40 H 0.111 0.889 41 H 0.053 0.947 42 H 0.410 0.590 43 H 0.275 0.725 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.470 -1.182 -12.931 20.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.042 4.042 3 N -0.332 5.332 4 C -0.014 4.014 5 C -0.225 4.225 6 C 0.348 3.652 7 O -0.459 6.459 8 C -0.178 4.178 9 C -0.058 4.058 10 C -0.157 4.157 11 C 0.033 3.967 12 C -0.203 4.203 13 C -0.769 4.769 14 S 2.745 3.255 15 O -0.997 6.997 16 O -0.994 6.994 17 N -0.715 5.715 18 C -0.441 4.441 19 H 0.113 0.887 20 C -0.208 4.208 21 N -0.555 5.555 22 Si 0.800 3.200 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.194 1.194 26 C -0.016 4.016 27 H 0.114 0.886 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.119 0.881 31 H 0.102 0.898 32 H 0.134 0.866 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.045 0.955 37 H 0.197 0.803 38 H 0.199 0.801 39 H 0.119 0.881 40 H 0.130 0.870 41 H 0.072 0.928 42 H 0.246 0.754 43 H 0.085 0.915 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.089 0.192 -12.576 20.421 hybrid contribution 0.694 -0.505 -0.404 0.949 sum -15.395 -0.313 -12.980 20.139 Atomic orbital electron populations 1.22326 0.93381 1.04040 1.03248 1.22201 0.96261 0.80695 1.05040 1.48058 1.63358 1.15451 1.06291 1.21619 0.98844 0.97028 0.83927 1.22131 0.96440 1.02842 1.01042 1.18496 0.76241 0.86161 0.84257 1.90744 1.50929 1.17490 1.86766 1.19958 0.98377 1.02717 0.96755 1.22315 0.96939 0.90137 0.96367 1.21554 0.98663 1.01700 0.93784 1.20042 0.91294 0.89856 0.95528 1.21346 1.03924 1.00984 0.94097 1.31109 1.21134 1.10016 1.14595 1.03960 0.73786 0.74611 0.73183 1.93435 1.63870 1.63615 1.78819 1.93437 1.80425 1.86545 1.38994 1.51281 1.61704 1.41195 1.17325 1.19383 1.33978 0.99712 0.91061 0.88684 1.25894 0.98581 0.95540 1.00796 1.69773 1.45837 1.10900 1.28940 0.85125 0.78072 0.78592 0.78241 1.19011 1.20437 1.19359 1.20782 0.96708 0.93481 0.90658 0.88593 0.92474 0.90632 0.88119 0.89833 0.86595 0.91445 0.91459 0.89361 0.95530 0.80290 0.80148 0.88088 0.87003 0.92830 0.75404 0.91508 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 9.06 71.98 0.65 -0.91 16 2 C 0.08 1.19 5.59 86.38 0.48 1.68 16 3 N -0.60 -13.50 2.48 -825.22 -2.05 -15.55 16 4 C 0.11 1.98 6.19 86.38 0.53 2.51 16 5 C -0.17 -3.12 10.24 71.98 0.74 -2.38 16 6 C 0.56 18.09 7.28 86.79 0.63 18.73 16 7 O -0.58 -23.39 16.54 -3.90 -0.06 -23.45 16 8 C -0.17 -5.71 5.11 -20.09 -0.10 -5.81 16 9 C -0.04 -0.95 7.40 22.52 0.17 -0.79 16 10 C -0.14 -3.36 9.69 22.23 0.22 -3.14 16 11 C 0.03 1.14 5.88 -19.81 -0.12 1.02 16 12 C -0.15 -4.52 8.79 71.24 0.63 -3.89 16 13 C -0.68 -27.71 5.79 22.23 0.13 -27.58 16 14 S 2.65 124.17 4.89 -56.49 -0.28 123.90 16 15 O -1.01 -53.33 16.68 -128.00 -2.13 -55.47 16 16 O -1.00 -47.76 16.39 -128.00 -2.10 -49.86 16 17 N -0.96 -47.13 4.62 -54.26 -0.25 -47.38 16 18 C -0.31 -15.71 9.63 84.03 0.81 -14.90 16 19 H 0.10 4.89 7.81 -2.91 -0.02 4.87 16 20 C 0.00 -0.23 5.50 84.86 0.47 0.24 16 21 N -0.91 -47.53 13.06 21.65 0.28 -47.25 16 22 Si 0.98 39.94 29.55 68.60 2.03 41.97 16 23 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 24 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 25 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 26 C 0.00 0.16 9.19 22.53 0.21 0.37 16 27 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 0.62 6.53 -2.39 -0.02 0.61 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.10 1.13 8.13 -2.39 -0.02 1.11 16 31 H 0.08 1.48 5.01 -2.39 -0.01 1.47 16 32 H 0.12 1.23 8.07 -2.39 -0.02 1.21 16 33 H 0.07 1.51 7.35 -2.38 -0.02 1.49 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.18 2.79 3.76 -2.90 -0.01 2.78 16 38 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 39 H 0.10 2.85 8.14 -2.38 -0.02 2.83 16 40 H 0.11 2.62 8.10 -2.39 -0.02 2.60 16 41 H 0.05 1.97 4.92 -2.39 -0.01 1.96 16 42 H 0.41 20.16 7.65 -96.74 -0.74 19.42 16 43 H 0.28 13.45 8.31 -92.71 -0.77 12.68 16 44 H 0.12 5.22 7.33 -2.91 -0.02 5.20 16 Total: -1.00 -74.64 370.76 1.18 -73.46 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: 0.30 Total: 34.50 kcal Atomic # 6 Polarization: -40.31 SS G_CDS: 5.44 Total: -34.87 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -2.01 Total: -110.18 kcal Atomic # 8 Polarization: -124.48 SS G_CDS: -4.30 Total: -128.78 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Atomic # 16 Polarization: 124.17 SS G_CDS: -0.28 Total: 123.90 kcal Total: -74.64 1.18 -73.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339118761.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.106 kcal (2) G-P(sol) polarization free energy of solvation -74.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.43 seconds