Wall clock time and date at job start Sat Apr 11 2020 05:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34232 * 117.00144 * 2 1 4 4 O 1.20824 * 120.00131 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99963 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47206 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47308 * 179.97438 * 6 5 3 8 8 N 1.46497 * 109.46935 * 180.02562 * 7 6 5 9 9 C 1.34780 * 119.99868 * 180.02562 * 8 7 6 10 10 S 1.71204 * 119.99615 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00581 * 180.02562 * 9 8 7 12 12 C 1.46493 * 120.00646 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.47443 * 270.00265 * 12 11 9 14 14 H 1.08001 * 120.00056 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00480 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99528 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00487 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46798 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47215 * 119.99681 * 17 15 13 20 20 H 1.48494 * 109.47431 * 240.00047 * 17 15 13 21 21 C 1.46505 * 119.99455 * 359.97438 * 11 9 8 22 22 C 1.50703 * 109.47064 * 90.00114 * 21 11 9 23 23 C 1.34515 * 125.79060 * 89.99944 * 22 21 11 24 24 C 1.41380 * 106.83832 * 179.97438 * 23 22 21 25 25 C 1.34506 * 106.84493 * 359.97438 * 24 23 22 26 26 O 1.34306 * 125.78568 * 269.69282 * 22 21 11 27 27 H 1.09003 * 109.47288 * 299.99862 * 1 2 3 28 28 H 1.09004 * 109.46713 * 59.99470 * 1 2 3 29 29 H 1.08995 * 109.47639 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47152 * 60.00498 * 5 3 2 31 31 H 1.08996 * 109.47682 * 300.00785 * 5 3 2 32 32 H 1.09005 * 109.46838 * 60.00662 * 6 5 3 33 33 H 1.08996 * 109.47117 * 300.00372 * 6 5 3 34 34 H 1.09005 * 109.46553 * 60.00582 * 7 6 5 35 35 H 1.09002 * 109.47070 * 300.00538 * 7 6 5 36 36 H 0.96993 * 120.00298 * 0.02562 * 8 7 6 37 37 H 1.09006 * 109.46911 * 30.00087 * 12 11 9 38 38 H 1.08996 * 109.47170 * 149.99599 * 12 11 9 39 39 H 0.97003 * 119.99687 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.47068 * 210.00083 * 21 11 9 41 41 H 1.09001 * 109.47372 * 330.00170 * 21 11 9 42 42 H 1.07996 * 126.58016 * 0.03378 * 23 22 21 43 43 H 1.08006 * 126.57610 * 179.97438 * 24 23 22 44 44 H 1.08005 * 125.79499 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 6 5.5281 2.8220 0.0023 8 7 5.9435 4.2269 0.0035 9 6 7.2539 4.5422 0.0041 10 16 8.4329 3.3008 0.0030 11 7 7.6361 5.8346 0.0057 12 6 9.0604 6.1773 0.0070 13 6 9.5479 6.2933 1.4282 14 1 8.8650 6.1287 2.2485 15 6 10.8658 6.6097 1.6814 16 7 11.6976 6.8096 0.6824 17 14 11.4699 6.7542 3.4430 18 1 10.3463 6.4835 4.3754 19 1 12.5550 5.7676 3.6768 20 1 11.9889 8.1256 3.6774 21 6 6.6271 6.8968 0.0061 22 6 6.2802 7.2596 1.4270 23 6 6.8903 8.2004 2.1701 24 6 6.2491 8.2065 3.4301 25 6 5.2854 7.2695 3.3816 26 8 5.3057 6.7023 2.1643 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.9564 0.7806 -0.8892 31 1 3.9558 0.7808 0.8907 32 1 3.6102 3.2358 0.8912 33 1 3.6108 3.2363 -0.8888 34 1 5.9185 2.3281 -0.8875 35 1 5.9171 2.3277 0.8925 36 1 5.2755 4.9302 0.0037 37 1 9.6222 5.3975 -0.5073 38 1 9.2058 7.1280 -0.5058 39 1 12.6249 7.0318 0.8605 40 1 7.0225 7.7737 -0.5066 41 1 5.7319 6.5478 -0.5087 42 1 7.7115 8.8309 1.8627 43 1 6.4876 8.8418 4.2705 44 1 4.6075 7.0184 4.1841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007967032.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:36 Heat of formation + Delta-G solvation = -69.230111 kcal Electronic energy + Delta-G solvation = -27221.810325 eV Core-core repulsion = 23266.932705 eV Total energy + Delta-G solvation = -3954.877620 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.46526 -41.50135 -40.38556 -37.87970 -37.24213 -34.92845 -34.18047 -33.77694 -32.01170 -30.03082 -28.99211 -27.83608 -26.98568 -24.98938 -23.61092 -22.91541 -22.65125 -21.62617 -21.19310 -19.14125 -18.82313 -18.73362 -18.24437 -17.97404 -17.74654 -17.36056 -16.88879 -16.57162 -16.44730 -15.95360 -15.64697 -15.30996 -14.89318 -14.52441 -14.42876 -14.21091 -13.87623 -13.74686 -13.60462 -13.45651 -13.27912 -13.04536 -12.96978 -12.87755 -12.64902 -12.59324 -12.48947 -12.16044 -12.03205 -11.94853 -11.77848 -11.57399 -11.46457 -10.77523 -10.54922 -9.82346 -9.40034 -8.80878 -8.31098 -8.13476 -6.19505 0.45594 0.76700 1.17034 1.17090 1.35787 1.41029 1.49431 1.63260 1.72907 1.99844 2.07528 2.41490 2.54442 3.20648 3.59435 3.61215 3.86422 3.90438 3.95191 4.15222 4.15962 4.30775 4.32140 4.33127 4.35273 4.51813 4.59030 4.65911 4.73515 4.81012 4.92444 5.04125 5.05679 5.11104 5.20336 5.21849 5.30693 5.40860 5.61182 5.69478 5.78335 5.95226 6.11608 6.19937 6.45056 6.71178 6.83873 7.44707 8.94881 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013534 B = 0.002989 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.347354 B = 9364.096657 C =10514.093657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.464 3.536 4 O -0.541 6.541 5 C -0.105 4.105 6 C -0.108 4.108 7 C 0.131 3.869 8 N -0.674 5.674 9 C 0.585 3.415 10 S -0.744 6.744 11 N -0.544 5.544 12 C 0.255 3.745 13 C -0.497 4.497 14 H 0.043 0.957 15 C 0.018 3.982 16 N -0.924 5.924 17 Si 0.948 3.052 18 H -0.275 1.275 19 H -0.289 1.289 20 H -0.272 1.272 21 C 0.178 3.822 22 C -0.055 4.055 23 C -0.178 4.178 24 C -0.234 4.234 25 C -0.032 4.032 26 O -0.185 6.185 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.129 0.871 30 H 0.134 0.866 31 H 0.129 0.871 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.407 0.593 37 H 0.042 0.958 38 H 0.037 0.963 39 H 0.263 0.737 40 H 0.137 0.863 41 H 0.117 0.883 42 H 0.140 0.860 43 H 0.161 0.839 44 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.476 -4.797 -0.236 24.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.309 3.691 4 O -0.431 6.431 5 C -0.143 4.143 6 C -0.146 4.146 7 C 0.008 3.992 8 N -0.307 5.307 9 C 0.222 3.778 10 S -0.616 6.616 11 N -0.250 5.250 12 C 0.135 3.865 13 C -0.536 4.536 14 H 0.062 0.938 15 C -0.180 4.180 16 N -0.564 5.564 17 Si 0.775 3.225 18 H -0.200 1.200 19 H -0.215 1.215 20 H -0.198 1.198 21 C 0.053 3.947 22 C -0.105 4.105 23 C -0.198 4.198 24 C -0.253 4.253 25 C -0.100 4.100 26 O -0.081 6.081 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.147 0.853 30 H 0.152 0.848 31 H 0.147 0.853 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.247 0.753 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.155 0.845 41 H 0.135 0.865 42 H 0.158 0.842 43 H 0.179 0.821 44 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -23.987 -5.478 -0.418 24.608 hybrid contribution 0.045 1.351 1.179 1.794 sum -23.942 -4.127 0.761 24.307 Atomic orbital electron populations 1.23521 0.74990 1.05591 1.02429 1.86511 1.24865 1.33046 1.83710 1.24135 0.92881 0.81007 0.71053 1.90673 1.68183 1.37335 1.46929 1.21275 0.86027 0.98337 1.08670 1.21478 0.92411 0.96248 1.04495 1.21607 0.94287 0.79067 1.04253 1.44933 1.02555 1.11135 1.72075 1.21612 0.87962 0.88008 0.80258 1.93326 1.50485 1.39549 1.78270 1.47662 1.10102 1.01875 1.65317 1.19432 0.73177 0.96349 0.97550 1.21207 0.94733 1.45829 0.91830 0.93834 1.25471 0.96785 0.95599 1.00191 1.70017 1.05033 1.49326 1.32054 0.85647 0.78008 0.77633 0.81190 1.19998 1.21512 1.19782 1.20374 0.92516 0.93176 0.88649 1.22608 0.93326 0.98262 0.96350 1.21776 1.01380 1.01756 0.94891 1.22136 0.99779 1.04060 0.99364 1.24695 1.02659 0.96066 0.86561 1.83928 1.46596 1.54047 1.23552 0.92112 0.91999 0.85265 0.84833 0.85319 0.90670 0.89935 0.89680 0.90821 0.75297 0.93982 0.94509 0.92812 0.84546 0.86485 0.84210 0.82144 0.74548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.49 16 2 O -0.37 -5.64 10.57 -51.43 -0.54 -6.18 16 3 C 0.46 7.99 7.96 71.23 0.57 8.56 16 4 O -0.54 -12.57 15.73 21.97 0.35 -12.23 16 5 C -0.11 -1.32 5.81 29.85 0.17 -1.14 16 6 C -0.11 -1.72 4.62 30.59 0.14 -1.58 16 7 C 0.13 2.97 5.13 86.38 0.44 3.41 16 8 N -0.67 -18.51 5.42 -350.15 -1.90 -20.41 16 9 C 0.58 22.62 7.70 179.05 1.38 24.00 16 10 S -0.74 -36.84 27.17 -56.49 -1.53 -38.38 16 11 N -0.54 -21.00 2.44 -718.53 -1.75 -22.75 16 12 C 0.26 12.62 4.97 85.63 0.43 13.05 16 13 C -0.50 -27.00 9.14 25.60 0.23 -26.76 16 14 H 0.04 2.46 7.65 -2.91 -0.02 2.44 16 15 C 0.02 1.03 5.46 84.65 0.46 1.49 16 16 N -0.92 -54.43 13.29 21.45 0.28 -54.15 16 17 Si 0.95 45.57 29.54 68.60 2.03 47.60 16 18 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 19 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 21 C 0.18 4.98 5.74 85.63 0.49 5.47 16 22 C -0.05 -1.67 6.90 24.83 0.17 -1.50 16 23 C -0.18 -5.80 10.40 22.19 0.23 -5.57 16 24 C -0.23 -6.55 10.91 22.19 0.24 -6.30 16 25 C -0.03 -0.79 12.09 66.97 0.81 0.02 16 26 O -0.18 -5.17 10.65 -2.58 -0.03 -5.20 16 27 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 28 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 29 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.30 8.10 -2.38 -0.02 1.28 16 33 H 0.08 1.28 8.10 -2.39 -0.02 1.26 16 34 H 0.08 2.01 7.99 -2.38 -0.02 1.99 16 35 H 0.07 1.91 7.99 -2.39 -0.02 1.89 16 36 H 0.41 9.06 6.20 -92.71 -0.58 8.49 16 37 H 0.04 2.44 6.58 -2.38 -0.02 2.42 16 38 H 0.04 1.82 7.89 -2.39 -0.02 1.80 16 39 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 40 H 0.14 3.40 7.89 -2.39 -0.02 3.39 16 41 H 0.12 2.35 6.36 -2.39 -0.02 2.33 16 42 H 0.14 4.83 8.06 -2.91 -0.02 4.80 16 43 H 0.16 3.79 8.06 -2.91 -0.02 3.76 16 44 H 0.24 3.51 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -81.19 391.44 4.31 -76.88 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.44 Total: 20.16 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 6.97 Total: 14.65 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -3.37 Total: -97.31 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.23 Total: -23.61 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 16 Polarization: -36.84 SS G_CDS: -1.53 Total: -38.38 kcal Total: -81.19 4.31 -76.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007967032.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.654 kcal (2) G-P(sol) polarization free energy of solvation -81.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds