Wall clock time and date at job start Sat Apr 11 2020 05:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99971 * 2 1 4 4 C 1.50696 * 109.46852 * 85.18268 * 3 2 1 5 5 H 1.08001 * 120.00158 * 1.00391 * 4 3 2 6 6 C 1.37881 * 120.00064 * 181.00904 * 4 3 2 7 7 N 1.31514 * 119.99798 * 6.45129 * 6 4 3 8 8 Si 1.86798 * 120.00068 * 186.45333 * 6 4 3 9 9 H 1.48502 * 109.46898 * 265.13010 * 8 6 4 10 10 H 1.48497 * 109.47087 * 145.13333 * 8 6 4 11 11 H 1.48498 * 109.47403 * 25.12686 * 8 6 4 12 12 S 1.65600 * 119.99830 * 180.02562 * 2 1 3 13 13 O 1.42104 * 106.40170 * 208.60067 * 12 2 1 14 14 O 1.42104 * 106.40007 * 341.51844 * 12 2 1 15 15 N 1.65601 * 107.21858 * 95.06127 * 12 2 1 16 16 C 1.47146 * 120.98444 * 95.32494 * 15 12 2 17 17 C 1.53294 * 108.38708 * 230.50994 * 16 15 12 18 18 O 1.42962 * 109.22304 * 307.69823 * 17 16 15 19 19 C 1.42971 * 114.16503 * 62.57786 * 18 17 16 20 20 H 1.08998 * 109.51213 * 57.34530 * 19 18 17 21 21 C 1.50696 * 109.50947 * 177.44229 * 19 18 17 22 22 C 1.38238 * 119.99775 * 37.15117 * 21 19 18 23 23 C 1.38242 * 119.99670 * 179.80766 * 22 21 19 24 24 C 1.38238 * 119.99894 * 0.41730 * 23 22 21 25 25 C 1.38237 * 120.00027 * 359.81282 * 24 23 22 26 26 C 1.38232 * 119.99953 * 217.41911 * 21 19 18 27 27 C 1.47160 * 120.97950 * 275.04232 * 15 12 2 28 28 H 1.08998 * 109.47363 * 89.99561 * 1 2 3 29 29 H 1.09005 * 109.47115 * 210.00002 * 1 2 3 30 30 H 1.09000 * 109.46847 * 329.99361 * 1 2 3 31 31 H 1.08995 * 109.47070 * 325.17727 * 3 2 1 32 32 H 1.09006 * 109.47065 * 205.18035 * 3 2 1 33 33 H 0.96999 * 119.99919 * 359.97438 * 7 6 4 34 34 H 1.08997 * 109.68185 * 350.23617 * 16 15 12 35 35 H 1.09009 * 109.68218 * 110.74683 * 16 15 12 36 36 H 1.09004 * 109.50972 * 67.61999 * 17 16 15 37 37 H 1.08995 * 109.51357 * 187.77558 * 17 16 15 38 38 H 1.07999 * 120.00595 * 359.97438 * 22 21 19 39 39 H 1.08000 * 119.99754 * 180.20221 * 23 22 21 40 40 H 1.07998 * 119.99691 * 179.78864 * 24 23 22 41 41 H 1.08001 * 119.99640 * 179.97438 * 25 24 23 42 42 H 1.07997 * 120.00506 * 359.97438 * 26 21 19 43 43 H 1.09004 * 109.68178 * 249.21167 * 27 15 12 44 44 H 1.08996 * 109.68041 * 9.76370 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3453 1.7633 1.4158 5 1 1.9489 1.1820 2.2351 6 6 2.9865 2.9582 1.6652 7 7 3.3565 3.7273 0.6646 8 14 3.3298 3.4846 3.4243 9 1 2.2394 4.3756 3.8961 10 1 4.6228 4.2127 3.4798 11 1 3.3998 2.2841 4.2956 12 16 2.2930 -1.4342 -0.0006 13 8 3.5301 -1.1836 0.6520 14 8 1.3738 -2.4283 0.4311 15 7 2.6589 -1.7882 -1.5764 16 6 3.9631 -1.4231 -2.1517 17 6 3.7191 -0.6804 -3.4703 18 8 2.8566 -1.4634 -4.2989 19 6 1.5562 -1.6837 -3.7470 20 1 1.0803 -0.7247 -3.5424 21 6 0.7183 -2.4623 -4.7282 22 6 1.2967 -3.4569 -5.4944 23 6 0.5272 -4.1738 -6.3916 24 6 -0.8188 -3.8901 -6.5288 25 6 -1.3961 -2.8923 -5.7659 26 6 -0.6274 -2.1781 -4.8659 27 6 1.6917 -2.4829 -2.4410 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.6486 2.0052 -0.5868 32 1 3.1846 1.1184 -0.4373 33 1 3.1786 3.4538 -0.2489 34 1 4.5012 -0.7753 -1.4596 35 1 4.5467 -2.3244 -2.3398 36 1 3.2510 0.2823 -3.2646 37 1 4.6693 -0.5225 -3.9804 38 1 2.3492 -3.6758 -5.3902 39 1 0.9784 -4.9530 -6.9879 40 1 -1.4192 -4.4479 -7.2322 41 1 -2.4476 -2.6705 -5.8734 42 1 -1.0785 -1.3984 -4.2701 43 1 2.0501 -3.4890 -2.6585 44 1 0.7249 -2.5372 -1.9406 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028036442.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:43 Heat of formation + Delta-G solvation = -85.287763 kcal Electronic energy + Delta-G solvation = -28730.532103 eV Core-core repulsion = 24774.958171 eV Total energy + Delta-G solvation = -3955.573932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.07907 -38.58211 -36.84875 -35.74372 -35.33535 -34.78161 -33.04695 -32.67722 -31.09075 -29.78103 -27.55962 -26.83725 -24.90112 -24.53767 -22.90373 -22.53658 -22.06074 -20.78680 -18.75615 -17.85315 -17.13709 -16.96165 -16.75363 -16.55376 -15.92135 -15.58919 -15.37568 -14.88667 -14.51027 -14.39974 -14.17322 -13.90251 -13.74402 -13.54737 -13.42822 -13.03280 -12.71494 -12.49588 -12.36329 -12.23366 -11.96366 -11.81419 -11.72322 -11.40061 -11.29571 -11.24500 -11.24219 -11.17341 -10.72259 -10.64045 -10.54906 -10.25832 -10.11682 -9.41110 -9.18782 -9.09517 -8.67853 -8.45889 -8.01534 -6.45962 -4.17312 0.94458 1.12566 1.22137 3.22232 3.41238 3.44367 3.47699 3.63131 3.68333 3.90286 4.48709 4.49926 4.64063 4.70140 4.75845 4.83126 4.84191 4.95962 5.03787 5.14811 5.21256 5.27435 5.29524 5.38127 5.41155 5.49202 5.55855 5.67944 5.73875 5.82357 5.84700 5.88628 6.01723 6.14455 6.25363 6.31611 6.34111 6.38561 6.50131 6.77960 6.79020 7.03168 7.08793 7.35234 7.93472 8.39192 8.73544 9.50740 10.91723 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019202 B = 0.003277 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.853604 B = 8542.163355 C = 8584.660971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.993 5.993 3 C 0.250 3.750 4 C -0.608 4.608 5 H 0.055 0.945 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 1.071 2.929 9 H -0.288 1.288 10 H -0.282 1.282 11 H -0.287 1.287 12 S 2.779 3.221 13 O -0.957 6.957 14 O -0.991 6.991 15 N -1.015 6.015 16 C 0.086 3.914 17 C 0.049 3.951 18 O -0.371 6.371 19 C 0.119 3.881 20 H 0.075 0.925 21 C -0.081 4.081 22 C -0.090 4.090 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.121 4.121 26 C -0.107 4.107 27 C 0.105 3.895 28 H 0.037 0.963 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.024 0.976 32 H 0.022 0.978 33 H 0.266 0.734 34 H 0.105 0.895 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.108 0.892 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.078 0.922 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.066 -12.941 -14.722 20.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.835 5.835 3 C 0.127 3.873 4 C -0.647 4.647 5 H 0.073 0.927 6 C -0.182 4.182 7 N -0.545 5.545 8 Si 0.899 3.101 9 H -0.214 1.214 10 H -0.208 1.208 11 H -0.213 1.213 12 S 2.788 3.212 13 O -0.941 6.941 14 O -0.975 6.975 15 N -0.853 5.853 16 C -0.040 4.040 17 C -0.029 4.029 18 O -0.290 6.290 19 C 0.060 3.940 20 H 0.092 0.908 21 C -0.082 4.082 22 C -0.108 4.108 23 C -0.143 4.143 24 C -0.137 4.137 25 C -0.139 4.139 26 C -0.125 4.125 27 C -0.021 4.021 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.042 0.958 32 H 0.040 0.960 33 H 0.076 0.924 34 H 0.123 0.877 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.126 0.874 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.096 0.904 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.100 -12.329 -13.192 18.763 hybrid contribution -0.875 -0.813 -1.030 1.577 sum -5.975 -13.142 -14.222 20.265 Atomic orbital electron populations 1.21361 0.79892 1.03689 1.00172 1.57552 1.14386 1.22960 1.88566 1.19080 0.90099 0.79726 0.98357 1.22310 1.41205 1.08808 0.92417 0.92665 1.25813 0.93409 0.92946 1.06041 1.70811 1.45422 1.38191 1.00038 0.83520 0.76955 0.75669 0.73964 1.21426 1.20797 1.21255 1.02121 0.73449 0.72896 0.72689 1.93628 1.44103 1.85256 1.71096 1.93527 1.65333 1.58743 1.79918 1.58655 1.22630 1.72441 1.31578 1.22097 0.84417 1.00990 0.96473 1.23003 0.94974 0.93769 0.91108 1.87921 1.23332 1.73309 1.44410 1.21279 0.84158 0.97536 0.91054 0.90751 1.19536 0.93659 0.97124 0.97862 1.21036 1.00211 0.94562 0.95028 1.21179 0.94179 0.99965 0.98928 1.21189 0.95255 0.97833 0.99422 1.21099 0.99871 0.96428 0.96540 1.21011 0.93124 0.99843 0.98522 1.22021 0.93186 0.96116 0.90804 0.94402 0.91360 0.90265 0.95791 0.96002 0.92352 0.87727 0.90539 0.92058 0.87434 0.85424 0.86022 0.86150 0.85858 0.85748 0.90386 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.62 10.65 59.85 0.64 2.26 16 2 N -0.99 -20.33 3.23 -123.05 -0.40 -20.72 16 3 C 0.25 6.03 4.47 -5.20 -0.02 6.01 16 4 C -0.61 -16.97 9.38 -34.44 -0.32 -17.30 16 5 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 6 C 0.02 0.63 5.45 -17.82 -0.10 0.54 16 7 N -0.91 -26.58 13.65 55.43 0.76 -25.83 16 8 Si 1.07 25.42 29.91 -169.99 -5.08 20.34 16 9 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 S 2.78 55.32 6.04 -107.50 -0.65 54.67 16 13 O -0.96 -22.61 15.94 -57.17 -0.91 -23.52 16 14 O -0.99 -20.54 15.64 -57.17 -0.89 -21.43 16 15 N -1.01 -15.82 3.39 -112.82 -0.38 -16.20 16 16 C 0.09 1.19 6.59 -3.54 -0.02 1.17 16 17 C 0.05 0.61 6.98 37.31 0.26 0.87 16 18 O -0.37 -4.78 9.61 -35.23 -0.34 -5.12 16 19 C 0.12 1.47 3.00 -27.52 -0.08 1.39 16 20 H 0.07 0.93 8.03 -51.93 -0.42 0.51 16 21 C -0.08 -0.91 5.00 -104.63 -0.52 -1.43 16 22 C -0.09 -0.95 9.36 -39.58 -0.37 -1.32 16 23 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 24 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 25 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 26 C -0.11 -1.08 9.67 -39.58 -0.38 -1.46 16 27 C 0.10 1.39 5.85 -3.32 -0.02 1.37 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 1.11 7.00 -51.93 -0.36 0.74 16 30 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 31 H 0.02 0.58 7.73 -51.93 -0.40 0.18 16 32 H 0.02 0.55 7.76 -51.93 -0.40 0.14 16 33 H 0.27 7.59 7.19 -40.82 -0.29 7.30 16 34 H 0.10 1.60 7.10 -51.93 -0.37 1.23 16 35 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.13 1.30 7.69 -52.49 -0.40 0.90 16 39 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.12 1.10 8.05 -52.49 -0.42 0.67 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.09 1.22 7.40 -51.93 -0.38 0.83 16 LS Contribution 373.99 15.07 5.64 5.64 Total: -1.00 -34.21 373.99 -10.87 -45.08 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -6.47 Total: -0.60 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -2.14 Total: -12.31 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: -0.02 Total: -62.75 kcal Atomic # 8 Polarization: -47.92 SS G_CDS: -2.14 Total: -50.07 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.08 Total: 20.34 kcal Atomic # 16 Polarization: 55.32 SS G_CDS: -0.65 Total: 54.67 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.21 -10.87 -45.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028036442.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.209 kcal (2) G-P(sol) polarization free energy of solvation -34.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds