Wall clock time and date at job start Sat Apr 11 2020 05:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46494 * 120.00111 * 2 1 4 4 C 1.50704 * 109.47271 * 274.99863 * 3 2 1 5 5 H 1.07998 * 119.99480 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00405 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99664 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 120.00320 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46993 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47312 * 119.99995 * 8 6 4 11 11 H 1.48503 * 109.47288 * 240.00110 * 8 6 4 12 12 S 1.65610 * 119.99942 * 179.97438 * 2 1 3 13 13 O 1.42095 * 106.40011 * 156.46334 * 12 2 1 14 14 O 1.42095 * 106.39865 * 23.53873 * 12 2 1 15 15 N 1.65603 * 107.21578 * 270.00196 * 12 2 1 16 16 C 1.46491 * 120.00352 * 64.99963 * 15 12 2 17 17 C 1.52994 * 109.47175 * 164.99710 * 16 15 12 18 18 H 1.09003 * 109.73002 * 54.42495 * 17 16 15 19 19 C 1.53406 * 109.69990 * 293.83727 * 17 16 15 20 20 O 1.42836 * 108.37202 * 175.56051 * 19 17 16 21 21 C 1.35847 * 117.85815 * 49.16502 * 20 19 17 22 22 C 1.39147 * 118.49505 * 162.99697 * 21 20 19 23 23 C 1.37963 * 120.21188 * 179.75491 * 22 21 20 24 24 C 1.38291 * 119.96265 * 359.97438 * 23 22 21 25 25 C 1.38106 * 119.97917 * 0.34123 * 24 23 22 26 26 C 1.38369 * 121.80888 * 342.88812 * 21 20 19 27 27 C 1.50776 * 121.40688 * 0.33060 * 26 21 20 28 28 H 1.09000 * 109.47526 * 269.99864 * 1 2 3 29 29 H 1.09001 * 109.47215 * 30.00007 * 1 2 3 30 30 H 1.08998 * 109.47385 * 150.00002 * 1 2 3 31 31 H 1.08997 * 109.47485 * 34.99901 * 3 2 1 32 32 H 1.09004 * 109.47405 * 155.00217 * 3 2 1 33 33 H 0.97007 * 119.99849 * 179.97438 * 7 6 4 34 34 H 0.97002 * 119.99416 * 244.99970 * 15 12 2 35 35 H 1.09005 * 109.46802 * 44.99666 * 16 15 12 36 36 H 1.09000 * 109.47626 * 285.00019 * 16 15 12 37 37 H 1.09001 * 109.68751 * 295.28475 * 19 17 16 38 38 H 1.09005 * 109.68201 * 55.80622 * 19 17 16 39 39 H 1.07995 * 119.89231 * 359.72401 * 22 21 20 40 40 H 1.08001 * 120.02156 * 180.02562 * 23 22 21 41 41 H 1.07998 * 120.01243 * 180.02562 * 24 23 22 42 42 H 1.08004 * 119.84111 * 179.75515 * 25 24 23 43 43 H 1.08996 * 109.43344 * 102.34942 * 27 26 21 44 44 H 1.08996 * 109.43448 * 222.21581 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3414 1.7656 -1.4154 5 1 1.9289 1.1934 -2.2332 6 6 2.9997 2.9508 -1.6664 7 7 3.5025 3.6473 -0.6706 8 14 3.1775 3.5671 -3.4208 9 1 2.5291 2.6077 -4.3505 10 1 2.5259 4.8955 -3.5472 11 1 4.6184 3.6883 -3.7592 12 16 2.2930 -1.4342 0.0006 13 8 3.5759 -1.1571 -0.5438 14 8 1.4112 -2.4067 -0.5433 15 7 2.5380 -1.8580 1.5827 16 6 1.3946 -2.1768 2.4412 17 6 1.8875 -2.8833 3.7055 18 1 2.6486 -2.2749 4.1941 19 6 2.4765 -4.2511 3.3373 20 8 3.0205 -4.8400 4.5195 21 6 2.2425 -4.8632 5.6329 22 6 2.5892 -5.7273 6.6670 23 6 1.8269 -5.7761 7.8159 24 6 0.7148 -4.9638 7.9419 25 6 0.3641 -4.1097 6.9148 26 6 1.1273 -4.0541 5.7604 27 6 0.7137 -3.1074 4.6622 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6501 2.0043 0.5894 32 1 3.1857 1.1176 0.4343 33 1 3.9660 4.4810 -0.8472 34 1 3.4387 -1.8952 1.9408 35 1 0.7079 -2.8308 1.9037 36 1 0.8793 -1.2566 2.7166 37 1 1.6923 -4.8924 2.9351 38 1 3.2638 -4.1238 2.5942 39 1 3.4574 -6.3622 6.5697 40 1 2.0990 -6.4476 8.6168 41 1 0.1177 -5.0010 8.8411 42 1 -0.5072 -3.4792 7.0140 43 1 -0.1257 -3.5338 4.1129 44 1 0.4143 -2.1545 5.0985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045798854.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:49 Heat of formation + Delta-G solvation = -94.646312 kcal Electronic energy + Delta-G solvation = -27501.294465 eV Core-core repulsion = 23545.314716 eV Total energy + Delta-G solvation = -3955.979749 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.98624 -37.91690 -36.75713 -36.33849 -35.52043 -35.21073 -33.55890 -32.45545 -30.73104 -30.50309 -27.80974 -26.13621 -25.82760 -25.07869 -23.03484 -22.34679 -22.22290 -20.25415 -18.89091 -18.10587 -17.36622 -16.98547 -16.60327 -16.42031 -16.27581 -15.70981 -15.27064 -15.04846 -14.91985 -14.39178 -14.21890 -13.86993 -13.72166 -13.44048 -13.33229 -13.28516 -13.20080 -12.61683 -12.33089 -12.19245 -11.99775 -11.70128 -11.65305 -11.56510 -11.48582 -11.18515 -11.10669 -11.06485 -10.91673 -10.73291 -10.68492 -10.53588 -10.05629 -9.77816 -9.40550 -9.07131 -8.47001 -8.40464 -8.10558 -6.08676 -4.12645 1.03181 1.16362 1.17642 3.05320 3.29695 3.37456 3.41275 3.45243 3.48688 4.05139 4.25635 4.32064 4.37396 4.43328 4.58569 4.72575 4.82922 4.92311 5.01428 5.12745 5.18396 5.23236 5.25509 5.27430 5.31918 5.39179 5.54341 5.59240 5.64225 5.73555 5.78184 5.93575 5.98900 6.04032 6.18747 6.25117 6.25992 6.50915 6.52317 7.01706 7.21211 7.22280 7.38313 7.57616 7.88968 8.17868 8.90157 9.52829 10.99980 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025705 B = 0.002406 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.027962 B =11635.644715 C =11828.603928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.995 5.995 3 C 0.257 3.743 4 C -0.528 4.528 5 H 0.061 0.939 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.282 1.282 12 S 2.782 3.218 13 O -0.962 6.962 14 O -0.998 6.998 15 N -1.137 6.137 16 C 0.130 3.870 17 C -0.132 4.132 18 H 0.095 0.905 19 C 0.064 3.936 20 O -0.314 6.314 21 C 0.133 3.867 22 C -0.151 4.151 23 C -0.090 4.090 24 C -0.155 4.155 25 C -0.084 4.084 26 C -0.157 4.157 27 C -0.074 4.074 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.035 0.965 32 H 0.038 0.962 33 H 0.263 0.737 34 H 0.413 0.587 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.113 0.887 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.083 0.917 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.031 -16.033 16.966 24.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.838 5.838 3 C 0.135 3.865 4 C -0.568 4.568 5 H 0.079 0.921 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.208 1.208 12 S 2.789 3.211 13 O -0.946 6.946 14 O -0.981 6.981 15 N -0.896 5.896 16 C 0.003 3.997 17 C -0.152 4.152 18 H 0.113 0.887 19 C -0.011 4.011 20 O -0.228 6.228 21 C 0.087 3.913 22 C -0.169 4.169 23 C -0.108 4.108 24 C -0.173 4.173 25 C -0.102 4.102 26 C -0.158 4.158 27 C -0.111 4.111 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.246 0.754 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.130 0.870 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.102 0.898 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.662 -16.413 16.118 23.949 hybrid contribution 0.251 0.895 -0.420 1.020 sum -6.411 -15.518 15.698 22.986 Atomic orbital electron populations 1.21373 0.80212 1.03578 1.00115 1.57582 1.14270 1.23315 1.88663 1.19060 0.91014 0.78721 0.97718 1.21528 1.36054 1.06262 0.92942 0.92112 1.24940 0.95112 0.96525 0.97527 1.69931 1.37368 1.15318 1.30881 0.86449 0.78018 0.78487 0.84539 1.19638 1.20972 1.20780 1.01938 0.73397 0.72951 0.72775 1.93651 1.40630 1.84805 1.75486 1.93522 1.67601 1.60193 1.76797 1.56329 1.14437 1.86379 1.32439 1.21126 0.88356 0.99776 0.90484 1.22045 0.99292 0.97361 0.96493 0.88699 1.23119 1.00267 0.92688 0.85016 1.86024 1.41505 1.77025 1.18255 1.18768 0.90719 0.94221 0.87564 1.20618 1.02488 1.00249 0.93577 1.20926 0.94658 0.98512 0.96714 1.21018 0.98488 0.98416 0.99396 1.20917 0.98730 0.98237 0.92330 1.19831 0.97647 1.00356 0.98000 1.20509 0.97631 0.98867 0.94110 0.94376 0.90347 0.91559 0.94707 0.94419 0.92729 0.75378 0.90172 0.90996 0.91251 0.86953 0.85307 0.85554 0.85950 0.85745 0.89819 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.52 10.68 59.84 0.64 2.16 16 2 N -1.00 -19.77 3.23 -123.06 -0.40 -20.17 16 3 C 0.26 6.29 5.08 -5.20 -0.03 6.27 16 4 C -0.53 -14.70 9.38 -34.44 -0.32 -15.02 16 5 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 7 N -0.90 -25.98 13.29 55.43 0.74 -25.24 16 8 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 S 2.78 52.18 6.10 -107.50 -0.66 51.52 16 13 O -0.96 -22.30 17.11 -57.17 -0.98 -23.28 16 14 O -1.00 -19.61 16.21 -57.17 -0.93 -20.53 16 15 N -1.14 -15.24 5.56 -10.62 -0.06 -15.30 16 16 C 0.13 1.38 5.62 -4.05 -0.02 1.35 16 17 C -0.13 -1.24 2.44 -90.37 -0.22 -1.46 16 18 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 19 C 0.06 0.64 6.26 37.37 0.23 0.88 16 20 O -0.31 -3.62 10.27 -19.26 -0.20 -3.82 16 21 C 0.13 1.44 6.47 -39.20 -0.25 1.19 16 22 C -0.15 -1.45 9.94 -39.34 -0.39 -1.84 16 23 C -0.09 -0.72 10.04 -39.66 -0.40 -1.12 16 24 C -0.15 -1.21 10.04 -39.61 -0.40 -1.61 16 25 C -0.08 -0.70 9.67 -39.53 -0.38 -1.09 16 26 C -0.16 -1.52 5.75 -104.44 -0.60 -2.12 16 27 C -0.07 -0.61 5.19 -27.81 -0.14 -0.75 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 30 H 0.07 1.01 7.02 -51.93 -0.36 0.65 16 31 H 0.03 0.86 8.11 -51.93 -0.42 0.44 16 32 H 0.04 0.98 7.61 -51.93 -0.40 0.59 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.41 4.92 8.48 -34.47 -0.29 4.63 16 35 H 0.08 0.83 7.75 -51.93 -0.40 0.43 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.11 1.08 7.58 -51.93 -0.39 0.68 16 39 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 42 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 43 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 376.41 15.07 5.67 5.67 Total: -1.00 -34.57 376.41 -10.67 -45.24 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.46 Total: 0.69 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -2.38 Total: -11.53 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: 0.28 Total: -60.71 kcal Atomic # 8 Polarization: -45.53 SS G_CDS: -2.10 Total: -47.64 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 52.18 SS G_CDS: -0.66 Total: 51.52 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.57 -10.67 -45.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045798854.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.405 kcal (2) G-P(sol) polarization free energy of solvation -34.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds