Wall clock time and date at job start Sat Apr 11 2020 05:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 120.00074 * 2 1 4 4 C 1.53005 * 109.47239 * 84.99936 * 3 2 1 5 5 C 1.52990 * 109.47350 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.47234 * 180.02562 * 5 4 3 7 7 C 1.34782 * 120.00041 * 179.97438 * 6 5 4 8 8 O 1.21546 * 119.99859 * 359.97438 * 7 6 5 9 9 C 1.47891 * 119.99867 * 179.97438 * 7 6 5 10 10 C 1.39923 * 120.02411 * 359.72358 * 9 7 6 11 11 C 1.38333 * 120.35611 * 179.74075 * 10 9 7 12 12 C 1.37755 * 120.40861 * 0.56181 * 11 10 9 13 13 C 1.40744 * 120.04191 * 359.69635 * 12 11 10 14 14 C 1.41438 * 120.17967 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99591 * 24.43812 * 14 13 12 16 16 C 1.39935 * 120.00120 * 204.44034 * 14 13 12 17 17 N 1.30820 * 120.00060 * 17.87513 * 16 14 13 18 18 Si 1.86798 * 119.99804 * 197.88047 * 16 14 13 19 19 H 1.48502 * 109.47323 * 59.99884 * 18 16 14 20 20 H 1.48496 * 109.47340 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46963 * 299.99731 * 18 16 14 22 22 C 1.38991 * 120.02263 * 179.97438 * 9 7 6 23 23 S 1.65596 * 119.99807 * 180.02562 * 2 1 3 24 24 C 1.81402 * 104.44618 * 269.99740 * 23 2 1 25 25 O 1.42096 * 104.28151 * 26.06918 * 23 2 1 26 26 O 1.42102 * 104.27763 * 153.92996 * 23 2 1 27 27 H 1.09004 * 109.47296 * 89.99493 * 1 2 3 28 28 H 1.08998 * 109.47286 * 210.00210 * 1 2 3 29 29 H 1.09002 * 109.47333 * 330.00135 * 1 2 3 30 30 H 1.09004 * 109.47325 * 325.00117 * 3 2 1 31 31 H 1.08996 * 109.47695 * 204.99899 * 3 2 1 32 32 H 1.09004 * 109.46815 * 59.99868 * 4 3 2 33 33 H 1.09006 * 109.46845 * 300.00492 * 4 3 2 34 34 H 1.09006 * 109.47437 * 299.99993 * 5 4 3 35 35 H 1.09004 * 109.47381 * 60.00078 * 5 4 3 36 36 H 0.97000 * 120.00134 * 0.02562 * 6 5 4 37 37 H 1.08001 * 119.81786 * 0.02562 * 10 9 7 38 38 H 1.07999 * 119.78886 * 180.28122 * 11 10 9 39 39 H 1.07995 * 119.97665 * 179.72109 * 12 11 10 40 40 H 0.97000 * 119.99984 * 180.02562 * 17 16 14 41 41 H 1.07997 * 120.20608 * 359.95800 * 22 9 7 42 42 H 1.09005 * 109.46889 * 60.00610 * 24 23 2 43 43 H 1.09007 * 109.46629 * 179.97438 * 24 23 2 44 44 H 1.08992 * 109.47464 * 300.00015 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3437 1.7733 1.4370 5 6 3.1081 3.0985 1.4370 6 7 3.2485 3.5813 2.8130 7 6 3.8926 4.7396 3.0584 8 8 4.3573 5.3833 2.1380 9 6 4.0338 5.2272 4.4474 10 6 3.4940 4.4894 5.5067 11 6 3.6268 4.9364 6.8091 12 6 4.2816 6.1183 7.0774 13 6 4.8265 6.8767 6.0243 14 6 5.4999 8.0903 6.2964 15 1 5.9452 8.2550 7.2665 16 6 5.5891 9.0777 5.3088 17 7 4.7800 9.0500 4.2812 18 14 6.8636 10.4352 5.4578 19 1 8.2224 9.8370 5.4909 20 1 6.7534 11.3478 4.2916 21 1 6.6286 11.1996 6.7091 22 6 4.6984 6.4213 4.7011 23 16 2.2930 -1.4341 -0.0006 24 6 2.5193 -1.8268 1.7559 25 8 1.3970 -2.3559 -0.6062 26 8 3.5395 -1.1189 -0.6057 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6502 2.0043 -0.5894 31 1 3.1858 1.1177 -0.4343 32 1 2.8910 1.0376 2.0265 33 1 1.3553 1.9242 1.8714 34 1 4.0964 2.9479 1.0026 35 1 2.5603 3.8339 0.8477 36 1 2.8786 3.0670 3.5476 37 1 2.9749 3.5637 5.3068 38 1 3.2105 4.3574 7.6202 39 1 4.3773 6.4630 8.0964 40 1 4.8422 9.7342 3.5964 41 1 5.1137 6.9957 3.8863 42 1 1.5450 -1.9196 2.2358 43 1 3.0618 -2.7675 1.8508 44 1 3.0866 -1.0297 2.2362 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049733065.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:55 Heat of formation + Delta-G solvation = -90.796215 kcal Electronic energy + Delta-G solvation = -26513.481460 eV Core-core repulsion = 22557.668664 eV Total energy + Delta-G solvation = -3955.812796 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.28462 -37.66261 -37.41991 -36.95247 -36.29944 -34.75178 -33.76429 -31.67321 -30.01841 -29.89930 -29.46276 -27.27466 -25.43580 -24.76685 -22.47164 -21.73874 -20.92973 -19.58299 -19.20517 -18.09531 -17.76413 -16.87995 -16.74543 -16.17914 -15.58265 -15.55716 -15.16483 -14.85870 -14.58701 -14.36306 -14.08527 -13.83458 -13.68510 -13.56435 -13.25586 -13.10685 -12.78851 -12.68838 -12.53509 -12.51441 -12.43023 -12.11115 -12.05445 -11.69054 -11.61019 -11.41472 -11.19082 -11.12038 -11.02748 -10.77759 -10.53134 -10.07069 -9.73645 -9.54032 -9.23759 -9.04481 -8.72322 -7.66899 -7.55992 -6.83326 -4.44696 -0.15568 2.17209 2.17472 2.79100 3.05757 3.07401 3.14342 3.44761 3.59082 3.73522 3.83312 3.89755 4.16180 4.40329 4.49688 4.60236 4.67132 4.79493 4.84163 5.06195 5.13636 5.23144 5.33262 5.41484 5.54463 5.56711 5.57951 5.69776 5.90444 5.98041 6.06820 6.09531 6.22501 6.68366 6.79606 6.95287 6.98013 7.17872 7.34430 7.66037 7.71591 7.88791 8.04530 8.15407 8.46970 8.76806 8.79938 8.90814 10.11340 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023708 B = 0.001998 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.755834 B =14013.673684 C =14560.574996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -1.002 6.002 3 C 0.116 3.884 4 C -0.156 4.156 5 C 0.122 3.878 6 N -0.739 5.739 7 C 0.563 3.437 8 O -0.544 6.544 9 C -0.128 4.128 10 C -0.220 4.220 11 C -0.097 4.097 12 C -0.213 4.213 13 C 0.099 3.901 14 C -0.459 4.459 15 H 0.081 0.919 16 C 0.073 3.927 17 N -0.782 5.782 18 Si 0.911 3.089 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.265 1.265 22 C -0.093 4.093 23 S 2.609 3.391 24 C -0.675 4.675 25 O -0.957 6.957 26 O -0.952 6.952 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.398 0.602 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.286 0.714 41 H 0.134 0.866 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.150 -17.440 -5.583 20.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.839 5.839 3 C -0.010 4.010 4 C -0.196 4.196 5 C -0.003 4.003 6 N -0.393 5.393 7 C 0.354 3.646 8 O -0.422 6.422 9 C -0.131 4.131 10 C -0.240 4.240 11 C -0.116 4.116 12 C -0.233 4.233 13 C 0.096 3.904 14 C -0.488 4.488 15 H 0.099 0.901 16 C -0.146 4.146 17 N -0.407 5.407 18 Si 0.735 3.265 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.190 1.190 22 C -0.113 4.113 23 S 2.702 3.298 24 C -0.825 4.825 25 O -0.947 6.947 26 O -0.942 6.942 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.234 0.766 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.146 0.854 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.639 -17.304 -7.261 20.261 hybrid contribution 0.071 0.501 1.271 1.368 sum -7.568 -16.803 -5.990 19.377 Atomic orbital electron populations 1.21480 0.78100 1.03002 1.02590 1.57412 1.15267 1.21372 1.89843 1.21370 0.98331 0.84956 0.96376 1.22322 1.01739 0.97439 0.98061 1.21116 1.00425 0.94047 0.84696 1.45926 1.60240 1.24953 1.08199 1.18853 0.76427 0.79396 0.89922 1.90703 1.48461 1.56649 1.46417 1.19467 1.05196 0.98192 0.90276 1.20310 1.10060 1.00880 0.92757 1.20430 0.99668 0.96439 0.95035 1.21092 1.05863 0.98199 0.98122 1.17605 0.89614 0.92346 0.90836 1.19566 1.30821 0.98880 0.99543 0.90078 1.25973 0.95107 0.99315 0.94244 1.69775 1.29973 1.32067 1.08836 0.86313 0.81555 0.79853 0.78741 1.18691 1.20198 1.18952 1.21649 0.98581 0.92938 0.98101 1.04969 0.73966 0.73271 0.77637 1.30630 1.11832 1.12346 1.27663 1.93608 1.64718 1.62695 1.73686 1.93617 1.44111 1.82840 1.73672 0.92113 0.91192 0.90698 0.89205 0.88123 0.91398 0.90394 0.91393 0.91421 0.76636 0.89349 0.88951 0.88628 0.90326 0.84815 0.85376 0.85388 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 10.22 59.85 0.61 1.10 16 2 N -1.00 -6.74 3.12 -121.75 -0.38 -7.12 16 3 C 0.12 0.84 5.64 -4.04 -0.02 0.82 16 4 C -0.16 -1.20 5.65 -26.73 -0.15 -1.35 16 5 C 0.12 1.46 5.67 -4.05 -0.02 1.44 16 6 N -0.74 -11.21 5.51 -61.24 -0.34 -11.55 16 7 C 0.56 11.90 7.77 -12.31 -0.10 11.80 16 8 O -0.54 -13.35 16.33 5.33 0.09 -13.26 16 9 C -0.13 -2.94 5.87 -105.04 -0.62 -3.56 16 10 C -0.22 -4.45 9.55 -38.92 -0.37 -4.82 16 11 C -0.10 -2.02 10.01 -39.72 -0.40 -2.42 16 12 C -0.21 -4.96 9.78 -38.81 -0.38 -5.34 16 13 C 0.10 2.57 5.57 -106.87 -0.60 1.97 16 14 C -0.46 -11.91 9.05 -37.73 -0.34 -12.25 16 15 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 16 C 0.07 1.83 5.14 -17.35 -0.09 1.74 16 17 N -0.78 -20.49 10.96 55.55 0.61 -19.88 16 18 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 19 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 22 C -0.09 -2.43 8.24 -38.44 -0.32 -2.75 16 23 S 2.61 20.24 6.02 -107.50 -0.65 19.59 16 24 C -0.68 -3.08 10.99 101.05 1.11 -1.97 16 25 O -0.96 -10.21 17.09 -57.54 -0.98 -11.19 16 26 O -0.95 -10.83 16.53 -57.54 -0.95 -11.78 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.28 7.79 -51.93 -0.40 -0.12 16 29 H 0.07 0.29 8.07 -51.93 -0.42 -0.13 16 30 H 0.09 0.57 8.11 -51.93 -0.42 0.15 16 31 H 0.10 0.82 6.82 -51.93 -0.35 0.47 16 32 H 0.07 0.45 6.96 -51.93 -0.36 0.09 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.40 5.06 6.49 -40.82 -0.26 4.80 16 37 H 0.09 1.44 6.38 -52.49 -0.33 1.10 16 38 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 40 H 0.29 6.89 8.30 -40.82 -0.34 6.55 16 41 H 0.13 3.81 5.74 -52.49 -0.30 3.51 16 42 H 0.13 0.38 8.14 -51.92 -0.42 -0.04 16 43 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 44 H 0.13 0.54 6.96 -51.93 -0.36 0.17 16 LS Contribution 380.11 15.07 5.73 5.73 Total: -1.00 -34.84 380.11 -9.74 -44.57 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.15 Total: 6.93 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -1.68 Total: -15.58 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: -0.11 Total: -38.55 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -1.85 Total: -36.24 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Atomic # 16 Polarization: 20.24 SS G_CDS: -0.65 Total: 19.59 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.84 -9.74 -44.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049733065.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.223 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds