Wall clock time and date at job start Sat Apr 11 2020 05:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81403 * 109.47024 * 2 1 4 4 O 1.42100 * 110.54188 * 68.37096 * 3 2 1 5 5 O 1.42098 * 110.54145 * 291.62292 * 3 2 1 6 6 N 1.65593 * 104.45004 * 179.97438 * 3 2 1 7 7 C 1.46500 * 120.00126 * 64.99643 * 6 3 2 8 8 C 1.52995 * 109.47299 * 164.99898 * 7 6 3 9 9 C 1.53000 * 109.47147 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.47111 * 179.97438 * 9 8 7 11 11 C 1.34781 * 120.00041 * 179.97438 * 10 9 8 12 12 O 1.21550 * 119.99911 * 0.02562 * 11 10 9 13 13 C 1.47889 * 120.00007 * 180.02562 * 11 10 9 14 14 C 1.39919 * 120.02289 * 359.72304 * 13 11 10 15 15 C 1.38331 * 120.35518 * 179.74109 * 14 13 11 16 16 C 1.37755 * 120.40962 * 0.56184 * 15 14 13 17 17 C 1.40749 * 120.04173 * 359.69893 * 16 15 14 18 18 C 1.41437 * 120.17715 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99703 * 24.43313 * 18 17 16 20 20 C 1.39935 * 119.99843 * 204.43361 * 18 17 16 21 21 N 1.30820 * 120.00060 * 17.88878 * 20 18 17 22 22 Si 1.86798 * 119.99804 * 197.89412 * 20 18 17 23 23 H 1.48504 * 109.47309 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47229 * 119.99657 * 22 20 18 25 25 H 1.48500 * 109.47071 * 239.99635 * 22 20 18 26 26 C 1.38989 * 120.02639 * 180.02562 * 13 11 10 27 27 H 1.08999 * 109.46754 * 60.00426 * 1 2 3 28 28 H 1.09004 * 109.46847 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47379 * 300.00328 * 1 2 3 30 30 H 1.08997 * 109.47379 * 239.99672 * 2 1 3 31 31 H 1.08999 * 109.46754 * 119.99574 * 2 1 3 32 32 H 0.96999 * 120.00139 * 244.99806 * 6 3 2 33 33 H 1.09009 * 109.46823 * 45.00383 * 7 6 3 34 34 H 1.08998 * 109.47617 * 285.00417 * 7 6 3 35 35 H 1.08996 * 109.47064 * 60.00250 * 8 7 6 36 36 H 1.09006 * 109.47532 * 299.99974 * 8 7 6 37 37 H 1.08998 * 109.47125 * 299.99836 * 9 8 7 38 38 H 1.08999 * 109.47064 * 60.00505 * 9 8 7 39 39 H 0.97004 * 119.99938 * 0.02562 * 10 9 8 40 40 H 1.07995 * 119.82198 * 0.02562 * 14 13 11 41 41 H 1.08007 * 119.79305 * 180.28187 * 15 14 13 42 42 H 1.08005 * 119.97807 * 179.71610 * 16 15 14 43 43 H 0.97000 * 119.99984 * 180.02562 * 21 20 18 44 44 H 1.08005 * 120.19845 * 359.95465 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8384 2.3439 1.2370 5 8 1.8386 2.3438 -1.2370 6 7 3.7842 1.5654 0.0007 7 6 4.4675 0.9669 -1.1487 8 6 5.9625 1.2835 -1.0749 9 6 6.6760 0.6590 -2.2757 10 7 8.1075 0.9626 -2.2052 11 6 8.9401 0.5110 -3.1641 12 8 8.5033 -0.1479 -4.0874 13 6 10.3853 0.8170 -3.0927 14 6 10.8877 1.5802 -2.0331 15 6 12.2390 1.8660 -1.9567 16 6 13.1037 1.4126 -2.9285 17 6 12.6157 0.6480 -4.0047 18 6 13.5011 0.1806 -5.0038 19 1 14.5491 0.0498 -4.7783 20 6 13.0189 -0.1124 -6.2844 21 7 11.8620 0.3598 -6.6717 22 14 14.0274 -1.1778 -7.4409 23 1 15.2882 -1.5822 -6.7685 24 1 13.2487 -2.3891 -7.8034 25 1 14.3471 -0.4086 -8.6702 26 6 11.2443 0.3520 -4.0814 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.2981 1.8767 0.7622 33 1 4.0545 1.3766 -2.0706 34 1 4.3237 -0.1135 -1.1349 35 1 6.3755 0.8738 -0.1531 36 1 6.1064 2.3639 -1.0889 37 1 6.5323 -0.4214 -2.2621 38 1 6.2630 1.0690 -3.1972 39 1 8.4562 1.4880 -1.4682 40 1 10.2177 1.9442 -1.2684 41 1 12.6178 2.4521 -1.1323 42 1 14.1568 1.6438 -2.8643 43 1 11.5277 0.1564 -7.5592 44 1 10.8601 -0.2340 -4.9033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051447021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:59 Heat of formation + Delta-G solvation = -105.340827 kcal Electronic energy + Delta-G solvation = -25886.866933 eV Core-core repulsion = 21930.423436 eV Total energy + Delta-G solvation = -3956.443498 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.27945 -37.55636 -37.22135 -36.64167 -36.31886 -34.41918 -33.73655 -33.66693 -31.22222 -29.80499 -29.43907 -25.71264 -25.08305 -24.58248 -22.56107 -21.82825 -20.93075 -19.72534 -19.51987 -18.15175 -17.68749 -17.01975 -16.73592 -16.20139 -15.97623 -15.74281 -15.27130 -14.98263 -14.67827 -14.54606 -14.37267 -13.75925 -13.70293 -13.30685 -13.11172 -13.03982 -12.91424 -12.69172 -12.51463 -12.49222 -12.38643 -12.10562 -11.93866 -11.72021 -11.67604 -11.43452 -11.17694 -11.09748 -11.04634 -10.75924 -10.50879 -10.05796 -9.91317 -9.71710 -9.24547 -9.06899 -8.73120 -7.66108 -7.54938 -6.82764 -4.43851 -0.18211 2.17687 2.27552 2.78322 3.06464 3.11085 3.12990 3.33242 3.58436 3.74585 3.83442 3.90176 4.06530 4.29661 4.46693 4.59558 4.62712 4.66912 4.71139 5.02064 5.11249 5.17237 5.24922 5.30902 5.39808 5.52233 5.57843 5.71457 5.88023 5.97450 6.07251 6.24194 6.50827 6.69315 6.78952 6.96145 6.98827 7.18616 7.35370 7.67032 7.72507 7.89625 8.04930 8.16073 8.48066 8.77704 8.80704 8.90397 10.11922 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023951 B = 0.001765 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.775349 B =15859.529276 C =16689.943653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.633 4.633 3 S 2.612 3.388 4 O -0.959 6.959 5 O -0.953 6.953 6 N -1.120 6.120 7 C 0.115 3.885 8 C -0.138 4.138 9 C 0.122 3.878 10 N -0.738 5.738 11 C 0.564 3.436 12 O -0.546 6.546 13 C -0.129 4.129 14 C -0.219 4.219 15 C -0.097 4.097 16 C -0.212 4.212 17 C 0.098 3.902 18 C -0.459 4.459 19 H 0.082 0.918 20 C 0.073 3.927 21 N -0.782 5.782 22 Si 0.910 3.090 23 H -0.260 1.260 24 H -0.270 1.270 25 H -0.274 1.274 26 C -0.092 4.092 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.419 0.581 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.400 0.600 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.284 0.716 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.866 -1.281 12.716 21.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.762 4.762 3 S 2.704 3.296 4 O -0.949 6.949 5 O -0.943 6.943 6 N -0.880 5.880 7 C -0.011 4.011 8 C -0.178 4.178 9 C -0.003 4.003 10 N -0.393 5.393 11 C 0.355 3.645 12 O -0.424 6.424 13 C -0.132 4.132 14 C -0.239 4.239 15 C -0.116 4.116 16 C -0.232 4.232 17 C 0.095 3.905 18 C -0.488 4.488 19 H 0.100 0.900 20 C -0.147 4.147 21 N -0.406 5.406 22 Si 0.734 3.266 23 H -0.183 1.183 24 H -0.195 1.195 25 H -0.199 1.199 26 C -0.112 4.112 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.253 0.747 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.235 0.765 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.096 0.904 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.951 -1.013 11.653 22.270 hybrid contribution 0.962 -0.756 0.164 1.234 sum -17.990 -1.768 11.817 21.596 Atomic orbital electron populations 1.21512 0.90402 1.05200 1.03555 1.30502 1.07401 1.26484 1.11811 1.04973 0.73094 0.77193 0.74333 1.93612 1.83128 1.73011 1.45188 1.93622 1.83254 1.71889 1.45519 1.55568 1.26038 1.78197 1.28186 1.21261 0.93607 0.97739 0.88516 1.21951 0.93618 1.02716 0.99472 1.21125 0.81319 1.00262 0.97631 1.45911 1.07156 1.57717 1.28491 1.18852 0.87026 0.77978 0.80660 1.90699 1.78232 1.39556 1.33868 1.19463 0.90764 1.04275 0.98697 1.20325 0.95178 1.08464 0.99944 1.20438 0.93385 0.99868 0.97883 1.21103 0.98191 1.04842 0.99070 1.17613 0.92075 0.89063 0.91720 1.19625 0.96317 1.38488 0.94343 0.90012 1.25976 0.95172 0.94307 0.99212 1.69794 1.17911 1.33349 1.19593 0.86230 0.80653 0.80140 0.79563 1.18327 1.19545 1.19910 1.21641 0.92999 0.99549 0.97059 0.90813 0.89920 0.90928 0.84908 0.84872 0.74663 0.89561 0.91309 0.90355 0.90104 0.91547 0.91365 0.76495 0.89261 0.88900 0.88608 0.90449 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.92 37.16 0.37 -0.30 16 2 C -0.63 -2.72 6.79 37.16 0.25 -2.47 16 3 S 2.61 19.43 5.46 -107.50 -0.59 18.84 16 4 O -0.96 -10.15 18.08 -57.54 -1.04 -11.19 16 5 O -0.95 -10.72 17.50 -57.54 -1.01 -11.72 16 6 N -1.12 -6.84 5.88 -10.61 -0.06 -6.90 16 7 C 0.12 0.75 6.13 -4.04 -0.02 0.73 16 8 C -0.14 -1.07 5.47 -26.73 -0.15 -1.21 16 9 C 0.12 1.44 5.67 -4.04 -0.02 1.42 16 10 N -0.74 -11.25 5.51 -61.23 -0.34 -11.59 16 11 C 0.56 11.92 7.77 -12.31 -0.10 11.83 16 12 O -0.55 -13.33 16.33 5.32 0.09 -13.25 16 13 C -0.13 -2.97 5.87 -105.04 -0.62 -3.59 16 14 C -0.22 -4.47 9.55 -38.92 -0.37 -4.84 16 15 C -0.10 -2.03 10.01 -39.72 -0.40 -2.43 16 16 C -0.21 -4.97 9.78 -38.81 -0.38 -5.35 16 17 C 0.10 2.56 5.57 -106.87 -0.60 1.96 16 18 C -0.46 -11.93 9.05 -37.73 -0.34 -12.27 16 19 H 0.08 2.02 7.91 -52.48 -0.42 1.60 16 20 C 0.07 1.82 5.14 -17.35 -0.09 1.73 16 21 N -0.78 -20.54 10.95 55.55 0.61 -19.94 16 22 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 23 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 C -0.09 -2.43 8.24 -38.45 -0.32 -2.75 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.13 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.13 0.36 8.14 -51.92 -0.42 -0.07 16 32 H 0.42 2.04 8.62 -34.47 -0.30 1.74 16 33 H 0.09 0.62 7.70 -51.92 -0.40 0.22 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.40 5.16 6.49 -40.82 -0.26 4.89 16 40 H 0.09 1.47 6.38 -52.49 -0.33 1.14 16 41 H 0.09 1.64 8.06 -52.48 -0.42 1.21 16 42 H 0.10 2.09 8.06 -52.48 -0.42 1.66 16 43 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 44 H 0.13 3.81 5.74 -52.48 -0.30 3.51 16 LS Contribution 384.25 15.07 5.79 5.79 Total: -1.00 -35.35 384.25 -10.57 -45.92 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -6.22 Total: 8.03 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -2.78 Total: -17.54 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.21 Total: -38.43 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: -1.96 Total: -36.16 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Atomic # 16 Polarization: 19.43 SS G_CDS: -0.59 Total: 18.84 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.35 -10.57 -45.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051447021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.416 kcal (2) G-P(sol) polarization free energy of solvation -35.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds