Wall clock time and date at job start Sat Apr 11 2020 05:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81403 * 109.47024 * 2 1 4 4 O 1.42100 * 110.54188 * 68.37096 * 3 2 1 5 5 O 1.42098 * 110.54145 * 291.62292 * 3 2 1 6 6 N 1.65593 * 104.45004 * 179.97438 * 3 2 1 7 7 C 1.46500 * 120.00126 * 64.99643 * 6 3 2 8 8 C 1.52995 * 109.47299 * 164.99898 * 7 6 3 9 9 C 1.53000 * 109.47147 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.47111 * 179.97438 * 9 8 7 11 11 C 1.34781 * 120.00041 * 179.97438 * 10 9 8 12 12 O 1.21550 * 119.99911 * 0.02562 * 11 10 9 13 13 C 1.47889 * 120.00007 * 180.02562 * 11 10 9 14 14 C 1.39919 * 120.02289 * 359.72304 * 13 11 10 15 15 C 1.38331 * 120.35518 * 179.74109 * 14 13 11 16 16 C 1.37755 * 120.40962 * 0.56184 * 15 14 13 17 17 C 1.40749 * 120.04173 * 359.69893 * 16 15 14 18 18 C 1.41437 * 120.17715 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99703 * 24.43313 * 18 17 16 20 20 C 1.39935 * 119.99843 * 204.43361 * 18 17 16 21 21 N 1.30820 * 120.00060 * 17.88878 * 20 18 17 22 22 Si 1.86798 * 119.99804 * 197.89412 * 20 18 17 23 23 H 1.48504 * 109.47309 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47229 * 119.99657 * 22 20 18 25 25 H 1.48500 * 109.47071 * 239.99635 * 22 20 18 26 26 C 1.38989 * 120.02639 * 180.02562 * 13 11 10 27 27 H 1.08999 * 109.46754 * 60.00426 * 1 2 3 28 28 H 1.09004 * 109.46847 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47379 * 300.00328 * 1 2 3 30 30 H 1.08997 * 109.47379 * 239.99672 * 2 1 3 31 31 H 1.08999 * 109.46754 * 119.99574 * 2 1 3 32 32 H 0.96999 * 120.00139 * 244.99806 * 6 3 2 33 33 H 1.09009 * 109.46823 * 45.00383 * 7 6 3 34 34 H 1.08998 * 109.47617 * 285.00417 * 7 6 3 35 35 H 1.08996 * 109.47064 * 60.00250 * 8 7 6 36 36 H 1.09006 * 109.47532 * 299.99974 * 8 7 6 37 37 H 1.08998 * 109.47125 * 299.99836 * 9 8 7 38 38 H 1.08999 * 109.47064 * 60.00505 * 9 8 7 39 39 H 0.97004 * 119.99938 * 0.02562 * 10 9 8 40 40 H 1.07995 * 119.82198 * 0.02562 * 14 13 11 41 41 H 1.08007 * 119.79305 * 180.28187 * 15 14 13 42 42 H 1.08005 * 119.97807 * 179.71610 * 16 15 14 43 43 H 0.97000 * 119.99984 * 180.02562 * 21 20 18 44 44 H 1.08005 * 120.19845 * 359.95465 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8384 2.3439 1.2370 5 8 1.8386 2.3438 -1.2370 6 7 3.7842 1.5654 0.0007 7 6 4.4675 0.9669 -1.1487 8 6 5.9625 1.2835 -1.0749 9 6 6.6760 0.6590 -2.2757 10 7 8.1075 0.9626 -2.2052 11 6 8.9401 0.5110 -3.1641 12 8 8.5033 -0.1479 -4.0874 13 6 10.3853 0.8170 -3.0927 14 6 10.8877 1.5802 -2.0331 15 6 12.2390 1.8660 -1.9567 16 6 13.1037 1.4126 -2.9285 17 6 12.6157 0.6480 -4.0047 18 6 13.5011 0.1806 -5.0038 19 1 14.5491 0.0498 -4.7783 20 6 13.0189 -0.1124 -6.2844 21 7 11.8620 0.3598 -6.6717 22 14 14.0274 -1.1778 -7.4409 23 1 15.2882 -1.5822 -6.7685 24 1 13.2487 -2.3891 -7.8034 25 1 14.3471 -0.4086 -8.6702 26 6 11.2443 0.3520 -4.0814 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.2981 1.8767 0.7622 33 1 4.0545 1.3766 -2.0706 34 1 4.3237 -0.1135 -1.1349 35 1 6.3755 0.8738 -0.1531 36 1 6.1064 2.3639 -1.0889 37 1 6.5323 -0.4214 -2.2621 38 1 6.2630 1.0690 -3.1972 39 1 8.4562 1.4880 -1.4682 40 1 10.2177 1.9442 -1.2684 41 1 12.6178 2.4521 -1.1323 42 1 14.1568 1.6438 -2.8643 43 1 11.5277 0.1564 -7.5592 44 1 10.8601 -0.2340 -4.9033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051447021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:58 Heat of formation + Delta-G solvation = -132.759403 kcal Electronic energy + Delta-G solvation = -25888.055892 eV Core-core repulsion = 21930.423436 eV Total energy + Delta-G solvation = -3957.632456 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.87739 -38.87063 -38.22847 -37.51937 -37.03078 -35.73075 -35.40745 -34.01573 -32.54455 -31.33643 -31.08158 -27.30509 -26.32463 -24.95005 -23.88928 -22.93858 -22.59116 -21.14366 -20.28648 -19.49471 -18.67488 -17.90019 -17.65514 -17.29157 -17.03460 -16.77260 -16.69151 -16.38251 -15.89451 -15.58973 -15.28366 -15.09550 -14.95858 -14.36961 -14.24398 -14.23979 -13.99138 -13.78135 -13.46601 -13.38292 -13.23430 -13.11998 -12.95726 -12.79180 -12.64398 -12.51557 -12.50319 -12.38274 -12.17502 -12.14084 -11.88597 -11.54187 -11.49046 -11.07747 -10.78163 -10.37310 -10.11520 -9.45701 -9.37204 -8.66468 -6.37596 -0.72327 0.39526 1.01362 1.36855 1.47050 1.53068 1.73107 2.11645 2.19641 2.30733 2.79403 2.82206 3.24062 3.68964 3.71002 3.85125 3.90356 3.99892 4.03933 4.10809 4.37872 4.44294 4.56366 4.57564 4.61386 4.62801 4.72676 4.82732 4.87265 4.94597 5.09856 5.11366 5.14640 5.20461 5.24409 5.32622 5.49597 5.54015 5.87892 5.93785 6.06512 6.10181 6.29985 6.52928 6.71038 6.88677 6.95491 7.34018 8.30452 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023951 B = 0.001765 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.775349 B =15859.529276 C =16689.943653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.610 4.610 3 S 2.615 3.385 4 O -0.996 6.996 5 O -1.000 7.000 6 N -1.114 6.114 7 C 0.111 3.889 8 C -0.127 4.127 9 C 0.116 3.884 10 N -0.713 5.713 11 C 0.559 3.441 12 O -0.590 6.590 13 C -0.140 4.140 14 C -0.196 4.196 15 C -0.096 4.096 16 C -0.218 4.218 17 C 0.065 3.935 18 C -0.497 4.497 19 H 0.083 0.917 20 C 0.028 3.972 21 N -0.825 5.825 22 Si 0.983 3.017 23 H -0.251 1.251 24 H -0.270 1.270 25 H -0.265 1.265 26 C -0.132 4.132 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.153 0.847 31 H 0.159 0.841 32 H 0.425 0.575 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.414 0.586 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.107 0.893 43 H 0.286 0.714 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.302 -1.595 15.340 23.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.743 4.743 3 S 2.712 3.288 4 O -0.987 6.987 5 O -0.990 6.990 6 N -0.875 5.875 7 C -0.016 4.016 8 C -0.166 4.166 9 C -0.008 4.008 10 N -0.366 5.366 11 C 0.349 3.651 12 O -0.471 6.471 13 C -0.144 4.144 14 C -0.216 4.216 15 C -0.114 4.114 16 C -0.238 4.238 17 C 0.063 3.937 18 C -0.526 4.526 19 H 0.101 0.899 20 C -0.186 4.186 21 N -0.451 5.451 22 Si 0.803 3.197 23 H -0.174 1.174 24 H -0.195 1.195 25 H -0.189 1.189 26 C -0.153 4.153 27 H 0.089 0.911 28 H 0.120 0.880 29 H 0.091 0.909 30 H 0.171 0.829 31 H 0.177 0.823 32 H 0.262 0.738 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.252 0.748 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.125 0.875 43 H 0.097 0.903 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.384 -1.248 14.347 24.148 hybrid contribution 0.972 -0.605 -0.439 1.227 sum -18.411 -1.853 13.907 23.148 Atomic orbital electron populations 1.21698 0.90518 1.06396 1.03605 1.30313 1.07226 1.22657 1.14141 1.04634 0.73140 0.78477 0.72584 1.93559 1.83736 1.75133 1.46257 1.93563 1.83990 1.74376 1.47070 1.55295 1.25467 1.78474 1.28286 1.21333 0.92608 0.99433 0.88224 1.21857 0.93917 1.02593 0.98196 1.21362 0.79256 1.00918 0.99294 1.45710 1.08092 1.55918 1.26922 1.18708 0.86986 0.78100 0.81318 1.90676 1.78749 1.41767 1.35939 1.19813 0.91850 1.04053 0.98634 1.20873 0.95999 1.05481 0.99238 1.20939 0.93200 0.99152 0.98145 1.21414 0.99426 1.04147 0.98832 1.17966 0.92354 0.90308 0.93099 1.19884 0.96570 1.40795 0.95396 0.89863 1.26860 0.96168 0.95001 1.00619 1.69892 1.19878 1.35152 1.20164 0.85149 0.79061 0.78051 0.77408 1.17437 1.19487 1.18949 1.21449 0.94010 1.01773 0.98038 0.91137 0.88047 0.90850 0.82872 0.82342 0.73843 0.90627 0.88508 0.88095 0.89895 0.91222 0.92599 0.74762 0.84258 0.84346 0.87479 0.90309 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.92 71.98 0.71 -0.40 16 2 C -0.61 -3.42 6.79 71.98 0.49 -2.93 16 3 S 2.62 35.79 5.46 -56.49 -0.31 35.49 16 4 O -1.00 -20.52 18.08 -127.65 -2.31 -22.83 16 5 O -1.00 -22.43 17.50 -127.65 -2.23 -24.66 16 6 N -1.11 -11.03 5.88 -187.49 -1.10 -12.13 16 7 C 0.11 1.14 6.13 86.38 0.53 1.67 16 8 C -0.13 -1.53 5.47 30.59 0.17 -1.37 16 9 C 0.12 2.51 5.67 86.38 0.49 3.00 16 10 N -0.71 -20.10 5.51 -465.92 -2.57 -22.66 16 11 C 0.56 23.54 7.77 86.80 0.67 24.22 16 12 O -0.59 -29.80 16.33 -3.87 -0.06 -29.86 16 13 C -0.14 -6.46 5.87 -20.13 -0.12 -6.58 16 14 C -0.20 -7.38 9.55 22.70 0.22 -7.16 16 15 C -0.10 -3.71 10.01 22.18 0.22 -3.49 16 16 C -0.22 -10.08 9.78 22.77 0.22 -9.86 16 17 C 0.06 3.51 5.57 -21.32 -0.12 3.40 16 18 C -0.50 -27.03 9.05 23.47 0.21 -26.81 16 19 H 0.08 4.28 7.91 -2.91 -0.02 4.26 16 20 C 0.03 1.48 5.14 85.25 0.44 1.92 16 21 N -0.83 -46.03 10.95 21.82 0.24 -45.79 16 22 Si 0.98 39.54 29.59 68.60 2.03 41.57 16 23 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 24 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 25 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 26 C -0.13 -7.27 8.24 23.00 0.19 -7.08 16 27 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.10 0.36 8.14 -2.38 -0.02 0.34 16 29 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.15 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.16 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.43 3.06 8.62 -96.75 -0.83 2.23 16 33 H 0.08 0.97 7.70 -2.38 -0.02 0.95 16 34 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 39 H 0.41 9.00 6.49 -92.71 -0.60 8.40 16 40 H 0.14 3.79 6.38 -2.91 -0.02 3.77 16 41 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 42 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 43 H 0.29 14.67 8.30 -92.71 -0.77 13.90 16 44 H 0.10 6.05 5.74 -2.91 -0.02 6.03 16 Total: -1.00 -83.25 384.25 -2.38 -85.63 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: -0.40 Total: 26.74 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: 4.33 Total: -31.49 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -3.43 Total: -80.59 kcal Atomic # 8 Polarization: -72.75 SS G_CDS: -4.60 Total: -77.35 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Atomic # 16 Polarization: 35.79 SS G_CDS: -0.31 Total: 35.49 kcal Total: -83.25 -2.38 -85.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051447021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.129 kcal (2) G-P(sol) polarization free energy of solvation -83.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds