Wall clock time and date at job start Sat Apr 11 2020 05:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46901 * 110.99661 * 2 1 4 4 C 1.52992 * 109.47859 * 66.04215 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 O 1.42898 * 109.47319 * 180.02562 * 5 4 3 7 7 C 1.35900 * 117.00172 * 179.97438 * 6 5 4 8 8 C 1.38761 * 120.04606 * 359.72218 * 7 6 5 9 9 C 1.38131 * 119.96646 * 179.74009 * 8 7 6 10 10 C 1.38265 * 120.06854 * 0.56021 * 9 8 7 11 11 C 1.38370 * 120.09963 * 359.69479 * 10 9 8 12 12 Cl 1.73596 * 119.98693 * 180.02562 * 11 10 9 13 13 C 1.38278 * 120.02485 * 0.02562 * 11 10 9 14 14 C 1.46888 * 111.00335 * 236.03776 * 2 1 3 15 15 C 1.50698 * 109.47466 * 293.95357 * 14 2 1 16 16 O 1.21283 * 119.99876 * 0.02562 * 15 14 2 17 17 N 1.34780 * 120.00290 * 179.97438 * 15 14 2 18 18 C 1.46499 * 120.00130 * 180.02562 * 17 15 14 19 19 C 1.50698 * 109.46961 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00463 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99787 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99752 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99870 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46745 * 90.00356 * 23 21 19 25 25 H 1.48494 * 109.46856 * 209.99997 * 23 21 19 26 26 H 1.48493 * 109.47025 * 330.00070 * 23 21 19 27 27 H 1.09000 * 109.47279 * 60.00622 * 1 2 3 28 28 H 1.09005 * 109.47207 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47798 * 300.00405 * 1 2 3 30 30 H 1.09002 * 109.46980 * 306.03874 * 3 2 1 31 31 H 1.09001 * 109.46628 * 186.04295 * 3 2 1 32 32 H 1.09002 * 109.47103 * 59.99734 * 4 3 2 33 33 H 1.08998 * 109.46862 * 300.00546 * 4 3 2 34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 3 35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 3 36 36 H 1.07994 * 120.01556 * 0.02613 * 8 7 6 37 37 H 1.08005 * 119.96575 * 180.24959 * 9 8 7 38 38 H 1.08000 * 119.95031 * 179.71714 * 10 9 8 39 39 H 1.08006 * 120.03196 * 180.02562 * 13 11 10 40 40 H 1.09003 * 109.46911 * 53.95651 * 14 2 1 41 41 H 1.09002 * 109.47379 * 173.95274 * 14 2 1 42 42 H 0.96996 * 119.99721 * 0.02562 * 17 15 14 43 43 H 1.09003 * 109.47227 * 300.00326 * 18 17 15 44 44 H 1.09005 * 109.46793 * 60.00379 * 18 17 15 45 45 H 0.97000 * 119.99537 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6313 2.0576 1.3181 5 6 2.1801 3.4858 1.3183 6 8 1.8406 4.1264 2.5496 7 6 2.2569 5.4098 2.7128 8 6 2.9824 6.0376 1.7103 9 6 3.4001 7.3438 1.8756 10 6 3.1060 8.0226 3.0436 11 6 2.3872 7.3976 4.0473 12 17 2.0190 8.2528 5.5124 13 6 1.9621 6.0920 3.8837 14 6 1.9954 -0.7661 -1.1374 15 6 1.6370 -2.2205 -0.9725 16 8 1.0047 -2.5831 -0.0031 17 7 2.0182 -3.1182 -1.9028 18 6 1.6692 -4.5320 -1.7428 19 6 2.2095 -5.3179 -2.9096 20 1 2.7583 -4.8147 -3.6919 21 6 2.0041 -6.6796 -2.9779 22 7 1.3362 -7.2924 -2.0250 23 14 2.6744 -7.6539 -4.4239 24 1 4.0461 -8.1273 -4.1084 25 1 1.7952 -8.8220 -4.6838 26 1 2.7147 -6.7869 -5.6288 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3635 0.5139 0.8899 30 1 1.5610 1.9273 -0.8310 31 1 3.0796 1.3444 -0.1082 32 1 2.0656 1.5018 2.1491 33 1 0.5471 2.0845 1.4263 34 1 1.7462 4.0419 0.4872 35 1 3.2644 3.4583 1.2103 36 1 3.2165 5.5067 0.7994 37 1 3.9614 7.8338 1.0936 38 1 3.4374 9.0424 3.1727 39 1 1.4007 5.6041 4.6669 40 1 1.5611 -0.3874 -2.0626 41 1 3.0797 -0.6612 -1.1754 42 1 2.5235 -2.8281 -2.6782 43 1 2.1035 -4.9110 -0.8176 44 1 0.5849 -4.6365 -1.7047 45 1 1.1914 -8.2503 -2.0733 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052458134.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:05 Heat of formation + Delta-G solvation = -55.927947 kcal Electronic energy + Delta-G solvation = -25184.194149 eV Core-core repulsion = 21227.849648 eV Total energy + Delta-G solvation = -3956.344501 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.64584 -39.22664 -38.28221 -37.08198 -36.66916 -34.16926 -32.92019 -32.33426 -31.33546 -30.23022 -28.68125 -26.99882 -26.59122 -24.13229 -23.22759 -22.55584 -21.86718 -20.96293 -19.63969 -18.81200 -17.12194 -16.79797 -16.76051 -16.48594 -15.88717 -15.64098 -15.55898 -15.35392 -14.87851 -14.56557 -14.40070 -14.17797 -13.94848 -13.73721 -13.50128 -13.30278 -12.55620 -12.41018 -12.33302 -12.20553 -12.10667 -11.94951 -11.91130 -11.63470 -11.51798 -11.36787 -11.27302 -11.18525 -10.98971 -10.85347 -10.80034 -10.32223 -9.40843 -9.37079 -9.04229 -8.75591 -8.74209 -8.28496 -7.86638 -6.17775 -4.24817 0.60733 0.83719 1.55873 2.69705 3.11927 3.23022 3.29106 3.31332 3.37011 3.66697 4.21322 4.24692 4.41133 4.47310 4.50981 4.57735 4.61296 4.73219 4.84747 4.90518 4.96488 5.05277 5.18313 5.25179 5.30200 5.32642 5.36705 5.56035 5.61703 5.63184 5.67875 5.74825 5.76829 5.81415 5.91295 6.05305 6.29133 6.88990 6.90948 7.04581 7.31513 7.44297 7.51365 7.66350 7.96200 8.62523 8.77981 9.11609 9.42057 10.92393 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.041027 B = 0.001289 C = 0.001266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.316461 B =21718.043529 C =22116.748061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.521 5.521 3 C 0.060 3.940 4 C -0.117 4.117 5 C 0.061 3.939 6 O -0.308 6.308 7 C 0.149 3.851 8 C -0.206 4.206 9 C -0.066 4.066 10 C -0.153 4.153 11 C 0.004 3.996 12 Cl -0.063 7.063 13 C -0.148 4.148 14 C 0.036 3.964 15 C 0.498 3.502 16 O -0.538 6.538 17 N -0.715 5.715 18 C 0.251 3.749 19 C -0.544 4.544 20 H 0.063 0.937 21 C 0.064 3.936 22 N -0.885 5.885 23 Si 0.904 3.096 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.273 1.273 27 H 0.018 0.982 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.142 0.858 40 H 0.058 0.942 41 H 0.098 0.902 42 H 0.389 0.611 43 H 0.027 0.973 44 H 0.026 0.974 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.805 32.705 6.751 33.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.245 5.245 3 C -0.068 4.068 4 C -0.155 4.155 5 C -0.014 4.014 6 O -0.221 6.221 7 C 0.102 3.898 8 C -0.225 4.225 9 C -0.085 4.085 10 C -0.172 4.172 11 C -0.023 4.023 12 Cl -0.034 7.034 13 C -0.167 4.167 14 C -0.096 4.096 15 C 0.282 3.718 16 O -0.416 6.416 17 N -0.364 5.364 18 C 0.130 3.870 19 C -0.582 4.582 20 H 0.081 0.919 21 C -0.140 4.140 22 N -0.522 5.522 23 Si 0.731 3.269 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 H 0.037 0.963 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.160 0.840 40 H 0.076 0.924 41 H 0.116 0.884 42 H 0.222 0.778 43 H 0.045 0.955 44 H 0.044 0.956 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.276 31.921 8.197 33.119 hybrid contribution 0.434 0.039 -1.978 2.026 sum 3.710 31.960 6.219 32.770 Atomic orbital electron populations 1.22632 0.86364 1.04513 0.99660 1.61527 1.09056 1.11611 1.42330 1.21970 1.00438 0.88761 0.95670 1.21517 1.02657 0.91939 0.99373 1.22858 1.00278 0.93914 0.84352 1.86093 1.73527 1.22969 1.39553 1.18784 0.93241 0.84223 0.93516 1.21422 1.03776 0.97034 1.00274 1.20919 0.97362 0.93509 0.96667 1.20973 1.01611 1.01189 0.93388 1.20580 0.99958 0.92600 0.89113 1.98388 1.93386 1.76674 1.34969 1.20242 1.05372 0.93205 0.97920 1.22023 1.01553 0.93276 0.92704 1.20272 0.80736 0.87206 0.83590 1.90633 1.40105 1.80505 1.30334 1.46454 1.55718 1.10549 1.23697 1.19087 0.96457 0.74010 0.97417 1.21229 1.36798 0.93014 1.07203 0.91933 1.24954 0.94924 0.97578 0.96536 1.69976 1.39446 1.10163 1.32642 0.86418 0.78836 0.79541 0.82127 1.20452 1.20999 1.19782 0.96334 0.88791 0.91400 0.94660 0.90427 0.89486 0.90416 0.91831 0.91560 0.84695 0.84692 0.84788 0.84004 0.92405 0.88359 0.77849 0.95516 0.95612 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 8.96 60.06 0.54 0.75 16 2 N -0.52 -6.94 4.50 -244.38 -1.10 -8.04 16 3 C 0.06 0.55 4.96 -3.83 -0.02 0.53 16 4 C -0.12 -1.03 5.51 -26.74 -0.15 -1.18 16 5 C 0.06 0.44 4.74 37.16 0.18 0.62 16 6 O -0.31 -2.91 10.14 -19.43 -0.20 -3.10 16 7 C 0.15 1.29 6.69 -39.22 -0.26 1.02 16 8 C -0.21 -1.41 9.04 -39.43 -0.36 -1.77 16 9 C -0.07 -0.39 10.04 -39.61 -0.40 -0.79 16 10 C -0.15 -1.00 9.83 -39.52 -0.39 -1.38 16 11 C 0.00 0.03 6.32 -39.52 -0.25 -0.22 16 12 Cl -0.06 -0.47 28.95 -51.86 -1.50 -1.97 16 13 C -0.15 -1.26 9.77 -39.40 -0.38 -1.65 16 14 C 0.04 0.48 5.45 -4.98 -0.03 0.46 16 15 C 0.50 9.64 7.52 -10.98 -0.08 9.56 16 16 O -0.54 -12.65 14.33 5.55 0.08 -12.57 16 17 N -0.71 -14.65 5.55 -61.47 -0.34 -14.99 16 18 C 0.25 6.58 5.43 -5.20 -0.03 6.56 16 19 C -0.54 -14.61 9.28 -34.44 -0.32 -14.93 16 20 H 0.06 1.56 7.60 -52.49 -0.40 1.17 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.88 -25.95 13.29 55.43 0.74 -25.21 16 23 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.09 1.59 5.82 -51.93 -0.30 1.29 16 29 H 0.07 0.81 6.47 -51.93 -0.34 0.47 16 30 H 0.04 0.29 8.12 -51.93 -0.42 -0.14 16 31 H 0.08 0.62 7.93 -51.93 -0.41 0.21 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.72 6.55 -51.93 -0.34 0.38 16 34 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 35 H 0.07 0.40 7.65 -51.93 -0.40 0.00 16 36 H 0.14 0.68 6.30 -52.49 -0.33 0.35 16 37 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 38 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 40 H 0.06 0.68 8.12 -51.93 -0.42 0.25 16 41 H 0.10 1.12 7.93 -51.93 -0.41 0.71 16 42 H 0.39 6.73 8.32 -40.82 -0.34 6.39 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 390.14 15.07 5.88 5.88 Total: -1.00 -32.68 390.14 -10.12 -42.80 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.61 Total: 2.34 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -2.05 Total: -0.75 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: -0.70 Total: -48.25 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.12 Total: -15.67 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.68 -10.12 -42.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052458134.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.132 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds