Wall clock time and date at job start Sat Apr 11 2020 05:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46901 * 110.99661 * 2 1 4 4 C 1.52992 * 109.47859 * 66.04215 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 O 1.42898 * 109.47319 * 180.02562 * 5 4 3 7 7 C 1.35900 * 117.00172 * 179.97438 * 6 5 4 8 8 C 1.38761 * 120.04606 * 359.72218 * 7 6 5 9 9 C 1.38131 * 119.96646 * 179.74009 * 8 7 6 10 10 C 1.38265 * 120.06854 * 0.56021 * 9 8 7 11 11 C 1.38370 * 120.09963 * 359.69479 * 10 9 8 12 12 Cl 1.73596 * 119.98693 * 180.02562 * 11 10 9 13 13 C 1.38278 * 120.02485 * 0.02562 * 11 10 9 14 14 C 1.46888 * 111.00335 * 236.03776 * 2 1 3 15 15 C 1.50698 * 109.47466 * 293.95357 * 14 2 1 16 16 O 1.21283 * 119.99876 * 0.02562 * 15 14 2 17 17 N 1.34780 * 120.00290 * 179.97438 * 15 14 2 18 18 C 1.46499 * 120.00130 * 180.02562 * 17 15 14 19 19 C 1.50698 * 109.46961 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00463 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99787 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99752 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99870 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46745 * 90.00356 * 23 21 19 25 25 H 1.48494 * 109.46856 * 209.99997 * 23 21 19 26 26 H 1.48493 * 109.47025 * 330.00070 * 23 21 19 27 27 H 1.09000 * 109.47279 * 60.00622 * 1 2 3 28 28 H 1.09005 * 109.47207 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47798 * 300.00405 * 1 2 3 30 30 H 1.09002 * 109.46980 * 306.03874 * 3 2 1 31 31 H 1.09001 * 109.46628 * 186.04295 * 3 2 1 32 32 H 1.09002 * 109.47103 * 59.99734 * 4 3 2 33 33 H 1.08998 * 109.46862 * 300.00546 * 4 3 2 34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 3 35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 3 36 36 H 1.07994 * 120.01556 * 0.02613 * 8 7 6 37 37 H 1.08005 * 119.96575 * 180.24959 * 9 8 7 38 38 H 1.08000 * 119.95031 * 179.71714 * 10 9 8 39 39 H 1.08006 * 120.03196 * 180.02562 * 13 11 10 40 40 H 1.09003 * 109.46911 * 53.95651 * 14 2 1 41 41 H 1.09002 * 109.47379 * 173.95274 * 14 2 1 42 42 H 0.96996 * 119.99721 * 0.02562 * 17 15 14 43 43 H 1.09003 * 109.47227 * 300.00326 * 18 17 15 44 44 H 1.09005 * 109.46793 * 60.00379 * 18 17 15 45 45 H 0.97000 * 119.99537 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6313 2.0576 1.3181 5 6 2.1801 3.4858 1.3183 6 8 1.8406 4.1264 2.5496 7 6 2.2569 5.4098 2.7128 8 6 2.9824 6.0376 1.7103 9 6 3.4001 7.3438 1.8756 10 6 3.1060 8.0226 3.0436 11 6 2.3872 7.3976 4.0473 12 17 2.0190 8.2528 5.5124 13 6 1.9621 6.0920 3.8837 14 6 1.9954 -0.7661 -1.1374 15 6 1.6370 -2.2205 -0.9725 16 8 1.0047 -2.5831 -0.0031 17 7 2.0182 -3.1182 -1.9028 18 6 1.6692 -4.5320 -1.7428 19 6 2.2095 -5.3179 -2.9096 20 1 2.7583 -4.8147 -3.6919 21 6 2.0041 -6.6796 -2.9779 22 7 1.3362 -7.2924 -2.0250 23 14 2.6744 -7.6539 -4.4239 24 1 4.0461 -8.1273 -4.1084 25 1 1.7952 -8.8220 -4.6838 26 1 2.7147 -6.7869 -5.6288 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3635 0.5139 0.8899 30 1 1.5610 1.9273 -0.8310 31 1 3.0796 1.3444 -0.1082 32 1 2.0656 1.5018 2.1491 33 1 0.5471 2.0845 1.4263 34 1 1.7462 4.0419 0.4872 35 1 3.2644 3.4583 1.2103 36 1 3.2165 5.5067 0.7994 37 1 3.9614 7.8338 1.0936 38 1 3.4374 9.0424 3.1727 39 1 1.4007 5.6041 4.6669 40 1 1.5611 -0.3874 -2.0626 41 1 3.0797 -0.6612 -1.1754 42 1 2.5235 -2.8281 -2.6782 43 1 2.1035 -4.9110 -0.8176 44 1 0.5849 -4.6365 -1.7047 45 1 1.1914 -8.2503 -2.0733 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052458134.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:05 Heat of formation + Delta-G solvation = -78.311114 kcal Electronic energy + Delta-G solvation = -25185.164756 eV Core-core repulsion = 21227.849648 eV Total energy + Delta-G solvation = -3957.315108 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.20066 -40.67626 -38.91221 -38.10145 -37.26465 -36.05954 -34.32997 -33.67506 -31.87095 -30.81525 -30.16563 -28.39809 -27.62137 -25.23488 -24.18118 -23.66214 -22.70388 -21.73231 -21.27814 -19.37709 -18.88251 -17.63018 -17.37240 -17.33160 -17.05870 -16.97287 -16.69328 -16.27747 -15.97448 -15.88534 -15.66961 -14.92495 -14.79815 -14.72359 -14.46647 -14.18248 -14.09414 -13.88549 -13.74905 -13.04004 -12.92336 -12.83845 -12.79780 -12.71472 -12.67952 -12.55850 -12.40734 -12.20957 -12.11567 -11.95958 -11.78362 -11.47372 -11.44616 -10.78859 -10.63002 -9.90092 -9.78067 -9.29801 -9.24827 -8.28168 -6.44855 0.08791 0.31546 1.01137 1.43922 1.46340 1.57465 1.83708 2.07144 2.33418 2.54347 2.60642 3.06872 3.14242 3.74937 3.89999 3.94066 4.01722 4.05230 4.08393 4.14964 4.28634 4.32752 4.37675 4.42372 4.45244 4.46415 4.57957 4.64515 4.72949 4.79480 5.04861 5.12339 5.12913 5.14178 5.24223 5.26160 5.28682 5.34021 5.51441 5.57773 5.72501 5.86570 5.95363 6.13886 6.36834 6.66962 6.98674 7.25190 7.57635 8.84012 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.041027 B = 0.001289 C = 0.001266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.316461 B =21718.043529 C =22116.748061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.548 5.548 3 C 0.064 3.936 4 C -0.113 4.113 5 C 0.063 3.937 6 O -0.332 6.332 7 C 0.131 3.869 8 C -0.206 4.206 9 C -0.063 4.063 10 C -0.155 4.155 11 C -0.007 4.007 12 Cl -0.067 7.067 13 C -0.168 4.168 14 C 0.051 3.949 15 C 0.491 3.509 16 O -0.587 6.587 17 N -0.710 5.710 18 C 0.268 3.732 19 C -0.556 4.556 20 H 0.085 0.915 21 C 0.003 3.997 22 N -0.932 5.932 23 Si 0.985 3.015 24 H -0.271 1.271 25 H -0.285 1.285 26 H -0.254 1.254 27 H 0.038 0.962 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.156 0.844 37 H 0.166 0.834 38 H 0.151 0.849 39 H 0.134 0.866 40 H 0.089 0.911 41 H 0.131 0.869 42 H 0.408 0.592 43 H -0.016 1.016 44 H -0.015 1.015 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.975 35.146 3.824 35.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.273 5.273 3 C -0.063 4.063 4 C -0.151 4.151 5 C -0.012 4.012 6 O -0.246 6.246 7 C 0.085 3.915 8 C -0.225 4.225 9 C -0.081 4.081 10 C -0.174 4.174 11 C -0.034 4.034 12 Cl -0.038 7.038 13 C -0.187 4.187 14 C -0.080 4.080 15 C 0.278 3.722 16 O -0.467 6.467 17 N -0.361 5.361 18 C 0.145 3.855 19 C -0.593 4.593 20 H 0.103 0.897 21 C -0.196 4.196 22 N -0.571 5.571 23 Si 0.808 3.192 24 H -0.196 1.196 25 H -0.211 1.211 26 H -0.178 1.178 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.174 0.826 37 H 0.184 0.816 38 H 0.169 0.831 39 H 0.152 0.848 40 H 0.106 0.894 41 H 0.149 0.851 42 H 0.244 0.756 43 H 0.002 0.998 44 H 0.003 0.997 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.470 34.426 5.250 35.251 hybrid contribution -0.273 -0.653 -0.976 1.205 sum 5.198 33.773 4.274 34.436 Atomic orbital electron populations 1.22475 0.87056 1.02051 1.01055 1.61437 1.08800 1.14293 1.42748 1.22025 1.01530 0.86416 0.96309 1.21426 1.01951 0.92986 0.98702 1.22900 1.01273 0.92764 0.84228 1.86049 1.74144 1.23629 1.40748 1.18954 0.94258 0.84122 0.94168 1.21707 1.02866 0.97493 1.00384 1.21310 0.96673 0.93134 0.96949 1.21283 1.00857 1.02026 0.93205 1.20716 1.00623 0.92512 0.89506 1.98381 1.93486 1.76622 1.35341 1.20324 1.06243 0.93872 0.98305 1.21949 1.03563 0.88361 0.94092 1.21460 0.79051 0.89594 0.82074 1.90621 1.41973 1.81846 1.32284 1.46180 1.56316 1.08510 1.25095 1.18492 0.93618 0.77536 0.95886 1.21641 1.36674 0.93519 1.07502 0.89673 1.26078 0.94942 0.98976 0.99650 1.70147 1.41085 1.10618 1.35210 0.85155 0.77961 0.77654 0.78433 1.19643 1.21096 1.17779 0.94351 0.93071 0.90623 0.92348 0.88473 0.91595 0.91448 0.89930 0.89941 0.82596 0.81622 0.83082 0.84815 0.89351 0.85138 0.75595 0.99759 0.99690 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 8.96 127.69 1.14 1.71 16 2 N -0.55 -13.65 4.50 -927.09 -4.17 -17.82 16 3 C 0.06 0.98 4.96 86.30 0.43 1.40 16 4 C -0.11 -1.81 5.51 30.59 0.17 -1.64 16 5 C 0.06 0.76 4.74 71.98 0.34 1.11 16 6 O -0.33 -6.02 10.14 -92.43 -0.94 -6.96 16 7 C 0.13 2.14 6.69 22.50 0.15 2.29 16 8 C -0.21 -2.28 9.04 22.37 0.20 -2.08 16 9 C -0.06 -0.55 10.04 22.25 0.22 -0.33 16 10 C -0.15 -1.72 9.83 22.31 0.22 -1.50 16 11 C -0.01 -0.10 6.32 22.31 0.14 0.04 16 12 Cl -0.07 -0.99 28.95 -2.72 -0.08 -1.07 16 13 C -0.17 -2.90 9.77 22.39 0.22 -2.68 16 14 C 0.05 1.25 5.45 85.56 0.47 1.71 16 15 C 0.49 19.09 7.52 87.66 0.66 19.75 16 16 O -0.59 -28.94 14.33 -3.04 -0.04 -28.98 16 17 N -0.71 -29.20 5.55 -466.78 -2.59 -31.79 16 18 C 0.27 14.66 5.43 85.63 0.46 15.13 16 19 C -0.56 -29.96 9.28 25.60 0.24 -29.72 16 20 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 21 C 0.00 0.17 5.46 84.66 0.46 0.63 16 22 N -0.93 -56.34 13.29 21.45 0.28 -56.05 16 23 Si 0.98 41.92 29.54 68.60 2.03 43.95 16 24 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 25 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 27 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.05 1.80 5.82 -2.38 -0.01 1.79 16 29 H 0.08 1.82 6.47 -2.38 -0.02 1.80 16 30 H 0.06 0.67 8.12 -2.39 -0.02 0.65 16 31 H 0.10 1.13 7.93 -2.39 -0.02 1.11 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.20 6.55 -2.39 -0.02 1.19 16 34 H 0.08 0.69 7.67 -2.39 -0.02 0.67 16 35 H 0.08 0.73 7.65 -2.39 -0.02 0.71 16 36 H 0.16 0.98 6.30 -2.91 -0.02 0.96 16 37 H 0.17 0.40 8.06 -2.91 -0.02 0.37 16 38 H 0.15 1.09 8.06 -2.91 -0.02 1.06 16 39 H 0.13 2.35 8.06 -2.91 -0.02 2.32 16 40 H 0.09 1.69 8.12 -2.39 -0.02 1.67 16 41 H 0.13 2.41 7.93 -2.39 -0.02 2.39 16 42 H 0.41 13.46 8.32 -92.71 -0.77 12.69 16 43 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 44 H -0.01 -0.92 8.14 -2.38 -0.02 -0.94 16 45 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -76.23 390.14 0.25 -75.98 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.23 Total: 16.91 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 5.53 Total: 5.83 kcal Atomic # 7 Polarization: -99.19 SS G_CDS: -6.48 Total: -105.66 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.98 Total: -35.94 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal Total: -76.23 0.25 -75.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052458134.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.327 kcal (2) G-P(sol) polarization free energy of solvation -76.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds