Wall clock time and date at job start Sat Apr 11 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.46914 * 2 1 4 4 S 1.65597 * 119.99815 * 164.99786 * 3 2 1 5 5 O 1.42097 * 106.40517 * 311.46618 * 4 3 2 6 6 O 1.42102 * 106.40138 * 178.54124 * 4 3 2 7 7 C 1.76200 * 107.21655 * 65.00454 * 4 3 2 8 8 C 1.38380 * 119.93017 * 89.99807 * 7 4 3 9 9 C 1.38334 * 120.29500 * 180.02562 * 8 7 4 10 10 C 1.37979 * 120.14553 * 0.02562 * 9 8 7 11 11 C 1.50701 * 120.07594 * 179.97438 * 10 9 8 12 12 C 1.39557 * 119.85342 * 359.97438 * 10 9 8 13 13 C 1.47846 * 120.14675 * 179.97438 * 12 10 9 14 14 O 1.21551 * 119.99932 * 354.01342 * 13 12 10 15 15 N 1.34772 * 119.99993 * 174.01621 * 13 12 10 16 16 C 1.46499 * 120.00143 * 179.97438 * 15 13 12 17 17 H 1.09003 * 109.46995 * 325.00248 * 16 15 13 18 18 C 1.53001 * 109.47130 * 84.99693 * 16 15 13 19 19 C 1.50703 * 109.47607 * 205.00127 * 16 15 13 20 20 H 1.07997 * 119.99387 * 359.97438 * 19 16 15 21 21 C 1.37871 * 120.00098 * 180.02562 * 19 16 15 22 22 N 1.31516 * 120.00091 * 0.02562 * 21 19 16 23 23 Si 1.86807 * 119.99844 * 179.97438 * 21 19 16 24 24 H 1.48502 * 109.46847 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46796 * 119.99821 * 23 21 19 26 26 H 1.48495 * 109.47136 * 240.00151 * 23 21 19 27 27 C 1.37940 * 119.92710 * 270.25524 * 7 4 3 28 28 H 1.08996 * 109.46895 * 299.99489 * 1 2 3 29 29 H 1.08992 * 109.47265 * 59.99952 * 1 2 3 30 30 H 1.09002 * 109.46495 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46895 * 240.00511 * 2 1 3 32 32 H 1.08992 * 109.47265 * 120.00047 * 2 1 3 33 33 H 0.97000 * 119.99972 * 345.00638 * 3 2 1 34 34 H 1.08004 * 119.85373 * 359.97438 * 8 7 4 35 35 H 1.07999 * 119.92937 * 180.02562 * 9 8 7 36 36 H 1.09000 * 109.47130 * 263.43630 * 11 10 9 37 37 H 1.09004 * 109.47112 * 23.43271 * 11 10 9 38 38 H 1.09001 * 109.47101 * 143.43364 * 11 10 9 39 39 H 0.97001 * 120.00016 * 0.02562 * 15 13 12 40 40 H 1.08995 * 109.47210 * 179.97438 * 18 16 15 41 41 H 1.09003 * 109.46728 * 60.00392 * 18 16 15 42 42 H 1.08998 * 109.47198 * 300.00567 * 18 16 15 43 43 H 0.97002 * 119.99888 * 180.02562 * 22 21 19 44 44 H 1.07998 * 120.07308 * 0.02562 * 27 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 16 3.6003 1.7002 0.3712 5 8 3.8849 0.9833 1.5647 6 8 3.7650 3.1065 0.2513 7 6 4.5894 0.9739 -0.8932 8 6 4.9194 1.7080 -2.0189 9 6 5.6950 1.1451 -3.0165 10 6 6.1444 -0.1539 -2.8950 11 6 6.9887 -0.7657 -3.9830 12 6 5.8152 -0.8998 -1.7624 13 6 6.2927 -2.2923 -1.6259 14 8 6.8802 -2.8264 -2.5463 15 7 6.0766 -2.9696 -0.4809 16 6 6.5492 -4.3496 -0.3457 17 1 6.4660 -4.8579 -1.3064 18 6 8.0116 -4.3461 0.1043 19 6 5.7103 -5.0701 0.6781 20 1 4.9057 -4.5517 1.1783 21 6 5.9705 -6.3907 0.9767 22 7 6.9512 -7.0215 0.3686 23 14 4.9309 -7.2835 2.2463 24 1 3.9001 -6.3580 2.7814 25 1 4.2665 -8.4495 1.6106 26 1 5.7993 -7.7527 3.3557 27 6 5.0286 -0.3271 -0.7614 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.4149 2.1090 -0.2173 34 1 4.5692 2.7247 -2.1194 35 1 5.9494 1.7235 -3.8923 36 1 6.3544 -1.3490 -4.6506 37 1 7.4813 0.0251 -4.5488 38 1 7.7412 -1.4158 -3.5367 39 1 5.6074 -2.5435 0.2535 40 1 8.3631 -5.3729 0.2053 41 1 8.0948 -3.8379 1.0650 42 1 8.6184 -3.8250 -0.6362 43 1 7.1340 -7.9508 0.5785 44 1 4.7665 -0.9005 0.1155 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064346067.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:11 Heat of formation + Delta-G solvation = -91.948716 kcal Electronic energy + Delta-G solvation = -27860.447360 eV Core-core repulsion = 23904.584588 eV Total energy + Delta-G solvation = -3955.862772 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.17593 -38.10208 -37.42478 -36.14587 -35.99534 -35.03755 -33.08577 -32.46762 -31.36289 -30.00940 -28.84095 -27.27536 -25.29283 -24.00720 -23.16624 -22.23646 -21.34940 -19.85367 -19.51031 -18.48355 -17.62444 -16.74384 -16.55116 -16.04739 -15.65349 -15.38791 -15.09945 -14.95447 -14.68220 -14.61741 -14.21824 -14.10103 -13.44208 -13.29859 -13.07259 -12.45690 -12.39279 -12.30584 -12.26968 -12.19630 -12.17547 -12.15555 -11.95723 -11.78893 -11.72401 -11.67215 -11.10893 -11.00071 -10.94963 -10.74179 -10.32550 -10.26443 -9.82000 -9.27157 -9.18109 -9.08584 -9.01462 -8.58294 -7.99767 -6.15610 -4.24948 0.18688 0.60888 0.89745 2.71207 3.02995 3.22678 3.30700 3.33561 3.54169 3.86264 3.90595 4.15862 4.34440 4.56268 4.63904 4.65768 4.81026 4.83908 4.98596 5.13182 5.17157 5.27958 5.31314 5.38815 5.51399 5.61642 5.69881 5.74834 5.78669 5.84885 5.85583 5.93150 6.18836 6.46757 6.65621 6.65959 6.79677 6.92522 7.10008 7.35984 7.49688 7.65237 7.85926 8.10174 8.54981 8.71629 8.97908 9.42490 10.90408 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010196 B = 0.003893 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.588765 B = 7189.889892 C = 9042.539751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.106 3.894 3 N -1.118 6.118 4 S 2.698 3.302 5 O -0.951 6.951 6 O -0.962 6.962 7 C -0.694 4.694 8 C -0.001 4.001 9 C -0.153 4.153 10 C 0.029 3.971 11 C -0.130 4.130 12 C -0.146 4.146 13 C 0.542 3.458 14 O -0.542 6.542 15 N -0.700 5.700 16 C 0.264 3.736 17 H 0.052 0.948 18 C -0.148 4.148 19 C -0.534 4.534 20 H 0.063 0.937 21 C 0.067 3.933 22 N -0.883 5.883 23 Si 0.902 3.098 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.282 1.282 27 C 0.013 3.987 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.417 0.583 34 H 0.141 0.859 35 H 0.136 0.864 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.106 0.894 39 H 0.389 0.611 40 H 0.092 0.908 41 H 0.028 0.972 42 H 0.015 0.985 43 H 0.264 0.736 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.881 17.690 -4.808 20.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.020 4.020 3 N -0.878 5.878 4 S 2.788 3.212 5 O -0.941 6.941 6 O -0.952 6.952 7 C -0.781 4.781 8 C -0.021 4.021 9 C -0.172 4.172 10 C 0.027 3.973 11 C -0.186 4.186 12 C -0.150 4.150 13 C 0.327 3.673 14 O -0.423 6.423 15 N -0.348 5.348 16 C 0.163 3.837 17 H 0.069 0.931 18 C -0.207 4.207 19 C -0.573 4.573 20 H 0.081 0.919 21 C -0.136 4.136 22 N -0.520 5.520 23 Si 0.729 3.271 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.208 1.208 27 C -0.007 4.007 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.251 0.749 34 H 0.159 0.841 35 H 0.154 0.846 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.124 0.876 39 H 0.222 0.778 40 H 0.110 0.890 41 H 0.047 0.953 42 H 0.034 0.966 43 H 0.074 0.926 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.941 17.348 -4.665 20.066 hybrid contribution -0.871 -0.373 0.290 0.991 sum -9.812 16.974 -4.375 20.089 Atomic orbital electron populations 1.21943 0.93911 1.03288 1.02559 1.21361 0.96666 0.81086 1.02840 1.55567 1.28594 1.14990 1.88698 1.01758 0.72374 0.73202 0.73913 1.93617 1.83699 1.74344 1.42458 1.93582 1.85353 1.29228 1.87044 1.30745 1.22457 1.06227 1.18718 1.20974 0.92242 0.98493 0.90386 1.21171 1.00695 0.95189 1.00139 1.20448 0.90871 0.92583 0.93373 1.21247 1.00341 1.00899 0.96065 1.20320 1.02373 0.96270 0.96048 1.18077 0.80523 0.84873 0.83805 1.90678 1.42864 1.69184 1.39527 1.46572 1.56578 1.16996 1.14615 1.18826 0.91575 0.75212 0.98127 0.93064 1.22090 0.97769 1.03303 0.97494 1.21240 1.16289 0.96549 1.23202 0.91899 1.24877 0.95258 0.97196 0.96291 1.69909 1.29160 1.11220 1.41758 0.86385 0.80121 0.79587 0.80976 1.19625 1.20891 1.20833 1.21134 0.90696 0.92170 0.96709 0.91782 0.92026 0.90690 0.91385 0.89701 0.74850 0.84135 0.84572 0.89866 0.92277 0.87556 0.77756 0.88978 0.95330 0.96612 0.92596 0.83807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 10.05 37.16 0.37 -0.60 16 2 C 0.11 0.85 6.94 -4.04 -0.03 0.82 16 3 N -1.12 -8.96 6.00 -10.61 -0.06 -9.02 16 4 S 2.70 30.40 5.73 -107.50 -0.62 29.78 16 5 O -0.95 -13.78 16.75 -57.17 -0.96 -14.74 16 6 O -0.96 -12.51 17.27 -57.17 -0.99 -13.50 16 7 C -0.69 -8.34 5.94 -39.64 -0.24 -8.58 16 8 C 0.00 -0.02 9.52 -39.49 -0.38 -0.39 16 9 C -0.15 -1.69 9.66 -39.64 -0.38 -2.08 16 10 C 0.03 0.40 5.91 -104.22 -0.62 -0.22 16 11 C -0.13 -1.72 8.74 36.01 0.31 -1.41 16 12 C -0.15 -2.32 5.87 -104.97 -0.62 -2.94 16 13 C 0.54 10.71 7.67 -12.33 -0.09 10.62 16 14 O -0.54 -12.07 13.00 5.32 0.07 -12.00 16 15 N -0.70 -14.54 5.02 -55.88 -0.28 -14.82 16 16 C 0.26 6.60 2.56 -69.08 -0.18 6.42 16 17 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 18 C -0.15 -3.65 9.26 37.16 0.34 -3.31 16 19 C -0.53 -13.93 8.73 -34.44 -0.30 -14.23 16 20 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 21 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 22 N -0.88 -24.48 11.32 55.43 0.63 -23.85 16 23 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.01 0.18 9.00 -39.18 -0.35 -0.17 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.74 7.75 -51.93 -0.40 0.34 16 33 H 0.42 2.36 8.65 -34.47 -0.30 2.06 16 34 H 0.14 1.18 7.61 -52.48 -0.40 0.78 16 35 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.61 8.04 -51.93 -0.42 0.19 16 38 H 0.11 1.72 5.85 -51.93 -0.30 1.42 16 39 H 0.39 7.15 6.61 -40.82 -0.27 6.88 16 40 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.14 1.90 6.01 -52.49 -0.32 1.59 16 LS Contribution 376.37 15.07 5.67 5.67 Total: -1.00 -33.51 376.37 -9.84 -43.35 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -6.04 Total: 8.13 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -2.24 Total: -14.37 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 0.28 Total: -47.69 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -1.88 Total: -40.24 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 30.40 SS G_CDS: -0.62 Total: 29.78 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.51 -9.84 -43.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064346067.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.601 kcal (2) G-P(sol) polarization free energy of solvation -33.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds