Wall clock time and date at job start Sat Apr 11 2020 05:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 119.99882 * 2 1 4 4 C 1.50701 * 109.47283 * 274.99781 * 3 2 1 5 5 O 1.21287 * 119.99646 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99846 * 180.02562 * 4 3 2 7 7 C 1.39930 * 119.99704 * 184.62660 * 6 4 3 8 8 C 1.38867 * 120.06863 * 144.91758 * 7 6 4 9 9 C 1.38116 * 119.92869 * 179.97438 * 8 7 6 10 10 C 1.38288 * 120.06675 * 359.97438 * 9 8 7 11 11 C 1.38274 * 120.14266 * 0.04372 * 10 9 8 12 12 C 1.38106 * 120.07243 * 359.95456 * 11 10 9 13 13 S 1.65601 * 120.00020 * 179.97438 * 2 1 3 14 14 O 1.42100 * 104.27877 * 26.06997 * 13 2 1 15 15 O 1.42103 * 104.27719 * 153.93250 * 13 2 1 16 16 C 1.81405 * 104.44708 * 270.00074 * 13 2 1 17 17 C 1.53005 * 109.46959 * 179.97438 * 16 13 2 18 18 C 1.52999 * 109.47231 * 179.97438 * 17 16 13 19 19 C 1.50691 * 109.47158 * 180.02562 * 18 17 16 20 20 H 1.08007 * 120.00100 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99891 * 180.02562 * 19 18 17 22 22 N 1.31509 * 120.00208 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99912 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47173 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46976 * 119.99984 * 23 21 19 26 26 H 1.48504 * 109.47194 * 240.00010 * 23 21 19 27 27 H 1.09002 * 109.46780 * 90.00353 * 1 2 3 28 28 H 1.08997 * 109.47009 * 209.99848 * 1 2 3 29 29 H 1.08994 * 109.46929 * 330.00342 * 1 2 3 30 30 H 1.09004 * 109.47295 * 154.99602 * 3 2 1 31 31 H 1.09003 * 109.47237 * 35.00352 * 3 2 1 32 32 H 0.97001 * 120.00351 * 4.62249 * 6 4 3 33 33 H 1.07996 * 120.04129 * 359.69820 * 8 7 6 34 34 H 1.07998 * 119.96934 * 179.97438 * 9 8 7 35 35 H 1.08001 * 119.92665 * 180.02562 * 10 9 8 36 36 H 1.08003 * 119.96469 * 179.97438 * 11 10 9 37 37 H 1.08007 * 120.04129 * 180.02562 * 12 11 10 38 38 H 1.09001 * 109.47206 * 299.99640 * 16 13 2 39 39 H 1.09003 * 109.47177 * 60.00108 * 16 13 2 40 40 H 1.09000 * 109.47387 * 300.00135 * 17 16 13 41 41 H 1.09003 * 109.47034 * 60.00086 * 17 16 13 42 42 H 1.09000 * 109.47143 * 300.00404 * 18 17 16 43 43 H 1.09003 * 109.46944 * 60.00150 * 18 17 16 44 44 H 0.96997 * 120.00094 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7657 -1.4154 5 8 1.8774 1.1235 -2.3337 6 7 2.9859 2.9237 -1.6607 7 6 3.0359 3.4343 -2.9626 8 6 2.9988 4.8063 -3.1737 9 6 3.0489 5.3072 -4.4599 10 6 3.1364 4.4439 -5.5367 11 6 3.1731 3.0772 -5.3297 12 6 3.1234 2.5701 -4.0461 13 16 2.2930 -1.4341 0.0006 14 8 1.3970 -2.3564 -0.6041 15 8 3.5396 -1.1194 -0.6047 16 6 2.5193 -1.8253 1.7575 17 6 3.2808 -3.1455 1.8920 18 6 3.4723 -3.4752 3.3738 19 6 4.2228 -4.7752 3.5063 20 1 4.5328 -5.3124 2.6220 21 6 4.5139 -5.2788 4.7563 22 7 4.1361 -4.6250 5.8330 23 14 5.4437 -6.8907 4.9206 24 1 5.7517 -7.4244 3.5695 25 1 6.7099 -6.6585 5.6610 26 1 4.6093 -7.8702 5.6619 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 3.1858 1.1178 0.4344 31 1 1.6501 2.0043 0.5895 32 1 3.4149 3.4032 -0.9349 33 1 2.9264 5.4809 -2.3335 34 1 3.0197 6.3741 -4.6249 35 1 3.1758 4.8380 -6.5414 36 1 3.2411 2.4056 -6.1728 37 1 3.1526 1.5025 -3.8850 38 1 3.0866 -1.0277 2.2372 39 1 1.5451 -1.9177 2.2376 40 1 2.7132 -3.9430 1.4124 41 1 4.2551 -3.0536 1.4119 42 1 4.0401 -2.6777 3.8530 43 1 2.4982 -3.5670 3.8543 44 1 4.3406 -4.9795 6.7124 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068878300.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:18 Heat of formation + Delta-G solvation = -79.506309 kcal Electronic energy + Delta-G solvation = -26788.859166 eV Core-core repulsion = 22833.535937 eV Total energy + Delta-G solvation = -3955.323229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.78986 -38.77978 -36.96285 -36.14202 -35.68664 -34.98029 -34.70298 -32.21561 -31.15540 -30.50463 -28.48423 -27.85391 -25.48963 -23.71905 -23.21889 -22.63691 -20.83824 -20.57776 -18.96581 -18.18789 -17.61268 -17.50788 -16.59288 -16.57212 -16.26174 -15.74108 -15.57348 -15.02624 -14.67546 -14.54441 -14.46010 -14.21440 -14.06102 -13.63789 -13.32472 -13.20442 -12.91204 -12.62739 -12.35722 -12.30585 -12.00416 -11.95313 -11.80635 -11.67466 -11.61844 -11.52970 -11.25386 -10.95601 -10.86246 -10.67089 -10.46235 -10.30857 -9.99047 -9.53868 -9.26466 -9.17417 -8.99720 -8.43638 -8.42785 -6.08417 -4.11336 0.33904 0.99962 1.15842 2.32453 2.51178 2.82427 3.27889 3.35553 3.40725 3.56557 4.01876 4.22002 4.30551 4.38891 4.41789 4.65157 4.69667 4.81850 4.90836 4.93294 5.09530 5.14859 5.15829 5.28223 5.28671 5.34276 5.37677 5.62812 5.74090 5.76809 5.84525 6.03157 6.07575 6.17118 6.23406 6.28509 6.33086 6.40598 6.78867 6.83279 7.05239 7.53721 7.63135 7.83250 7.89713 8.30126 8.95107 9.53622 11.02797 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024404 B = 0.002082 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.069093 B =13444.273425 C =13645.443471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.991 5.991 3 C 0.110 3.890 4 C 0.497 3.503 5 O -0.502 6.502 6 N -0.677 5.677 7 C 0.147 3.853 8 C -0.147 4.147 9 C -0.105 4.105 10 C -0.138 4.138 11 C -0.102 4.102 12 C -0.121 4.121 13 S 2.596 3.404 14 O -0.951 6.951 15 O -0.955 6.955 16 C -0.609 4.609 17 C -0.107 4.107 18 C 0.031 3.969 19 C -0.526 4.526 20 H 0.059 0.941 21 C 0.057 3.943 22 N -0.895 5.895 23 Si 0.894 3.106 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.283 1.283 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.412 0.588 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.141 0.859 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.021 0.979 43 H 0.021 0.979 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.377 23.088 -14.666 27.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.826 5.826 3 C -0.020 4.020 4 C 0.282 3.718 5 O -0.375 6.375 6 N -0.324 5.324 7 C 0.052 3.948 8 C -0.168 4.168 9 C -0.123 4.123 10 C -0.157 4.157 11 C -0.121 4.121 12 C -0.141 4.141 13 S 2.693 3.307 14 O -0.941 6.941 15 O -0.946 6.946 16 C -0.740 4.740 17 C -0.146 4.146 18 C -0.008 4.008 19 C -0.564 4.564 20 H 0.077 0.923 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.722 3.278 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.209 1.209 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.248 0.752 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.159 0.841 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.532 22.103 -15.870 27.767 hybrid contribution 0.580 -0.293 1.292 1.447 sum -4.952 21.810 -14.578 26.697 Atomic orbital electron populations 1.21503 0.77755 1.02897 1.02836 1.57403 1.15534 1.19901 1.89712 1.21068 0.99678 0.88115 0.93185 1.21585 0.77164 0.80089 0.92944 1.90716 1.46330 1.54720 1.45727 1.43544 1.55318 1.24902 1.08601 1.17787 1.00136 0.92325 0.84503 1.20896 1.04754 0.93190 0.97929 1.20927 0.99729 0.99687 0.91976 1.21152 1.01996 0.93526 0.98986 1.21113 0.98863 0.95385 0.96719 1.21416 0.99867 1.01183 0.91589 1.05701 0.73790 0.72746 0.78488 1.93572 1.64569 1.61682 1.74266 1.93565 1.43952 1.82660 1.74384 1.30615 1.10728 1.09553 1.23139 1.21520 0.98206 0.90579 1.04299 1.19068 0.97445 0.96827 0.87419 1.21294 1.36133 1.06570 0.92426 0.92285 1.25023 0.95921 0.97575 0.95897 1.69961 1.46765 1.38968 0.97732 0.86496 0.79559 0.83480 0.78265 1.19581 1.20941 1.20923 0.91950 0.90509 0.91183 0.86540 0.86765 0.75236 0.85745 0.85787 0.86072 0.85719 0.84141 0.85434 0.85310 0.91521 0.91538 0.96107 0.96074 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.92 10.22 59.85 0.61 1.53 16 2 N -0.99 -11.34 2.61 -123.05 -0.32 -11.66 16 3 C 0.11 0.94 5.76 -5.19 -0.03 0.91 16 4 C 0.50 5.63 7.74 -10.99 -0.09 5.54 16 5 O -0.50 -7.84 13.86 5.55 0.08 -7.76 16 6 N -0.68 -5.83 5.34 -9.86 -0.05 -5.88 16 7 C 0.15 1.49 6.30 -83.69 -0.53 0.96 16 8 C -0.15 -1.17 9.97 -39.39 -0.39 -1.56 16 9 C -0.10 -0.78 10.04 -39.61 -0.40 -1.18 16 10 C -0.14 -1.12 10.04 -39.55 -0.40 -1.52 16 11 C -0.10 -1.00 10.04 -39.62 -0.40 -1.40 16 12 C -0.12 -1.43 8.70 -39.39 -0.34 -1.78 16 13 S 2.60 39.78 5.32 -107.50 -0.57 39.20 16 14 O -0.95 -17.67 17.09 -57.54 -0.98 -18.65 16 15 O -0.96 -17.02 16.99 -57.54 -0.98 -18.00 16 16 C -0.61 -9.06 6.18 37.16 0.23 -8.83 16 17 C -0.11 -2.14 5.16 -26.73 -0.14 -2.27 16 18 C 0.03 0.77 4.97 -27.89 -0.14 0.63 16 19 C -0.53 -14.71 9.11 -34.44 -0.31 -15.03 16 20 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 23 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.70 7.79 -51.93 -0.40 0.30 16 29 H 0.07 0.45 7.94 -51.93 -0.41 0.03 16 30 H 0.12 0.81 7.61 -51.93 -0.40 0.41 16 31 H 0.11 0.48 7.96 -51.93 -0.41 0.07 16 32 H 0.41 1.91 8.82 -40.82 -0.36 1.55 16 33 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 37 H 0.14 2.00 6.23 -52.48 -0.33 1.67 16 38 H 0.13 1.60 8.14 -51.92 -0.42 1.18 16 39 H 0.13 1.69 8.14 -51.92 -0.42 1.27 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 386.66 15.07 5.83 5.83 Total: -1.00 -38.76 386.66 -10.21 -48.97 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -6.50 Total: -0.48 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -2.42 Total: -22.46 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.36 Total: -43.09 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -1.88 Total: -44.41 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 39.78 SS G_CDS: -0.57 Total: 39.20 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.76 -10.21 -48.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068878300.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.538 kcal (2) G-P(sol) polarization free energy of solvation -38.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds