Wall clock time and date at job start Sat Apr 11 2020 05:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 119.99882 * 2 1 4 4 C 1.50701 * 109.47283 * 274.99781 * 3 2 1 5 5 O 1.21287 * 119.99646 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99846 * 180.02562 * 4 3 2 7 7 C 1.39930 * 119.99704 * 184.62660 * 6 4 3 8 8 C 1.38867 * 120.06863 * 144.91758 * 7 6 4 9 9 C 1.38116 * 119.92869 * 179.97438 * 8 7 6 10 10 C 1.38288 * 120.06675 * 359.97438 * 9 8 7 11 11 C 1.38274 * 120.14266 * 0.04372 * 10 9 8 12 12 C 1.38106 * 120.07243 * 359.95456 * 11 10 9 13 13 S 1.65601 * 120.00020 * 179.97438 * 2 1 3 14 14 O 1.42100 * 104.27877 * 26.06997 * 13 2 1 15 15 O 1.42103 * 104.27719 * 153.93250 * 13 2 1 16 16 C 1.81405 * 104.44708 * 270.00074 * 13 2 1 17 17 C 1.53005 * 109.46959 * 179.97438 * 16 13 2 18 18 C 1.52999 * 109.47231 * 179.97438 * 17 16 13 19 19 C 1.50691 * 109.47158 * 180.02562 * 18 17 16 20 20 H 1.08007 * 120.00100 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99891 * 180.02562 * 19 18 17 22 22 N 1.31509 * 120.00208 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99912 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47173 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46976 * 119.99984 * 23 21 19 26 26 H 1.48504 * 109.47194 * 240.00010 * 23 21 19 27 27 H 1.09002 * 109.46780 * 90.00353 * 1 2 3 28 28 H 1.08997 * 109.47009 * 209.99848 * 1 2 3 29 29 H 1.08994 * 109.46929 * 330.00342 * 1 2 3 30 30 H 1.09004 * 109.47295 * 154.99602 * 3 2 1 31 31 H 1.09003 * 109.47237 * 35.00352 * 3 2 1 32 32 H 0.97001 * 120.00351 * 4.62249 * 6 4 3 33 33 H 1.07996 * 120.04129 * 359.69820 * 8 7 6 34 34 H 1.07998 * 119.96934 * 179.97438 * 9 8 7 35 35 H 1.08001 * 119.92665 * 180.02562 * 10 9 8 36 36 H 1.08003 * 119.96469 * 179.97438 * 11 10 9 37 37 H 1.08007 * 120.04129 * 180.02562 * 12 11 10 38 38 H 1.09001 * 109.47206 * 299.99640 * 16 13 2 39 39 H 1.09003 * 109.47177 * 60.00108 * 16 13 2 40 40 H 1.09000 * 109.47387 * 300.00135 * 17 16 13 41 41 H 1.09003 * 109.47034 * 60.00086 * 17 16 13 42 42 H 1.09000 * 109.47143 * 300.00404 * 18 17 16 43 43 H 1.09003 * 109.46944 * 60.00150 * 18 17 16 44 44 H 0.96997 * 120.00094 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7657 -1.4154 5 8 1.8774 1.1235 -2.3337 6 7 2.9859 2.9237 -1.6607 7 6 3.0359 3.4343 -2.9626 8 6 2.9988 4.8063 -3.1737 9 6 3.0489 5.3072 -4.4599 10 6 3.1364 4.4439 -5.5367 11 6 3.1731 3.0772 -5.3297 12 6 3.1234 2.5701 -4.0461 13 16 2.2930 -1.4341 0.0006 14 8 1.3970 -2.3564 -0.6041 15 8 3.5396 -1.1194 -0.6047 16 6 2.5193 -1.8253 1.7575 17 6 3.2808 -3.1455 1.8920 18 6 3.4723 -3.4752 3.3738 19 6 4.2228 -4.7752 3.5063 20 1 4.5328 -5.3124 2.6220 21 6 4.5139 -5.2788 4.7563 22 7 4.1361 -4.6250 5.8330 23 14 5.4437 -6.8907 4.9206 24 1 5.7517 -7.4244 3.5695 25 1 6.7099 -6.6585 5.6610 26 1 4.6093 -7.8702 5.6619 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 3.1858 1.1178 0.4344 31 1 1.6501 2.0043 0.5895 32 1 3.4149 3.4032 -0.9349 33 1 2.9264 5.4809 -2.3335 34 1 3.0197 6.3741 -4.6249 35 1 3.1758 4.8380 -6.5414 36 1 3.2411 2.4056 -6.1728 37 1 3.1526 1.5025 -3.8850 38 1 3.0866 -1.0277 2.2372 39 1 1.5451 -1.9177 2.2376 40 1 2.7132 -3.9430 1.4124 41 1 4.2551 -3.0536 1.4119 42 1 4.0401 -2.6777 3.8530 43 1 2.4982 -3.5670 3.8543 44 1 4.3406 -4.9795 6.7124 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068878300.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:17 Heat of formation + Delta-G solvation = -107.912298 kcal Electronic energy + Delta-G solvation = -26790.090942 eV Core-core repulsion = 22833.535937 eV Total energy + Delta-G solvation = -3956.555005 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.55930 -39.51302 -38.28642 -37.15493 -36.84014 -36.47190 -35.78554 -34.17289 -31.82243 -31.22709 -29.67020 -29.18504 -26.38742 -25.53211 -23.94964 -23.33731 -22.33898 -21.57761 -20.03847 -19.09422 -18.61847 -18.57061 -18.22725 -17.50628 -17.16065 -17.03909 -16.50641 -16.47016 -16.06345 -15.65703 -15.32897 -15.23966 -14.86675 -14.52279 -14.32245 -14.18732 -14.03268 -13.97997 -13.72891 -13.52164 -13.36106 -13.21586 -13.01605 -12.78348 -12.69823 -12.64979 -12.62102 -12.53508 -12.18593 -12.14969 -11.76625 -11.47398 -11.37362 -11.22431 -11.01756 -10.57920 -10.05153 -9.84990 -9.13130 -8.23348 -6.33675 -0.86960 0.30891 0.46822 1.38940 1.40156 1.52901 1.53841 1.56965 2.06799 2.39417 2.83252 2.89010 3.07890 3.10339 3.50850 3.69081 3.82044 3.89368 4.04713 4.08608 4.22040 4.31251 4.38288 4.41400 4.53044 4.60577 4.62586 4.66620 4.68885 4.85486 4.94380 5.00387 5.05608 5.11777 5.34375 5.40134 5.44632 5.45399 5.57202 5.63297 5.63547 5.79352 6.10987 6.19918 6.41812 6.81671 7.12129 7.35471 8.88068 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024404 B = 0.002082 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.069093 B =13444.273425 C =13645.443471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.985 5.985 3 C 0.101 3.899 4 C 0.487 3.513 5 O -0.557 6.557 6 N -0.662 5.662 7 C 0.127 3.873 8 C -0.141 4.141 9 C -0.103 4.103 10 C -0.139 4.139 11 C -0.118 4.118 12 C -0.154 4.154 13 S 2.612 3.388 14 O -0.991 6.991 15 O -0.986 6.986 16 C -0.598 4.598 17 C -0.109 4.109 18 C 0.032 3.968 19 C -0.553 4.553 20 H 0.057 0.943 21 C 0.004 3.996 22 N -0.927 5.927 23 Si 0.961 3.039 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.277 1.277 27 H 0.040 0.960 28 H 0.079 0.921 29 H 0.113 0.887 30 H 0.136 0.864 31 H 0.170 0.830 32 H 0.431 0.569 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.145 0.855 36 H 0.128 0.872 37 H 0.104 0.896 38 H 0.157 0.843 39 H 0.150 0.850 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.009 0.991 43 H 0.006 0.994 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.380 25.774 -13.901 29.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.822 5.822 3 C -0.028 4.028 4 C 0.274 3.726 5 O -0.433 6.433 6 N -0.310 5.310 7 C 0.033 3.967 8 C -0.161 4.161 9 C -0.121 4.121 10 C -0.158 4.158 11 C -0.136 4.136 12 C -0.175 4.175 13 S 2.709 3.291 14 O -0.982 6.982 15 O -0.977 6.977 16 C -0.730 4.730 17 C -0.148 4.148 18 C -0.006 4.006 19 C -0.591 4.591 20 H 0.075 0.925 21 C -0.194 4.194 22 N -0.567 5.567 23 Si 0.786 3.214 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.202 1.202 27 H 0.058 0.942 28 H 0.098 0.902 29 H 0.131 0.869 30 H 0.153 0.847 31 H 0.188 0.812 32 H 0.271 0.729 33 H 0.174 0.826 34 H 0.175 0.825 35 H 0.163 0.837 36 H 0.146 0.854 37 H 0.122 0.878 38 H 0.175 0.825 39 H 0.168 0.832 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.027 0.973 43 H 0.024 0.976 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.508 24.817 -15.095 29.565 hybrid contribution 0.565 -1.006 1.008 1.532 sum -4.943 23.811 -14.087 28.104 Atomic orbital electron populations 1.21723 0.76502 1.05216 1.02220 1.57015 1.16213 1.19634 1.89332 1.21585 1.01364 0.87753 0.92070 1.22215 0.76554 0.80205 0.93640 1.90711 1.48806 1.56365 1.47447 1.43420 1.54475 1.24273 1.08809 1.18006 1.00849 0.93269 0.84557 1.21251 1.03165 0.92298 0.99374 1.21393 0.97964 1.01262 0.91470 1.21475 1.00957 0.92631 1.00696 1.21267 0.99479 0.96772 0.96131 1.21320 1.02730 0.99882 0.93534 1.04927 0.72920 0.73095 0.78171 1.93515 1.65427 1.63890 1.75340 1.93520 1.45642 1.83286 1.75209 1.30481 1.11624 1.07578 1.23309 1.21340 0.99132 0.93441 1.00895 1.18959 0.95899 0.95398 0.90337 1.21765 1.36667 1.08023 0.92661 0.92472 1.25892 0.96797 1.01127 0.95606 1.70056 1.47753 1.40627 0.98247 0.85460 0.78380 0.79192 0.78410 1.19078 1.20104 1.20207 0.94154 0.90188 0.86859 0.84671 0.81227 0.72898 0.82558 0.82523 0.83677 0.85418 0.87803 0.82509 0.83183 0.92045 0.91642 0.97306 0.97607 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.56 10.22 127.77 1.31 2.87 16 2 N -0.99 -21.09 2.61 -543.22 -1.42 -22.50 16 3 C 0.10 1.46 5.76 85.63 0.49 1.95 16 4 C 0.49 10.75 7.74 87.66 0.68 11.43 16 5 O -0.56 -18.26 13.86 -3.05 -0.04 -18.30 16 6 N -0.66 -10.58 5.34 -303.50 -1.62 -12.20 16 7 C 0.13 2.53 6.30 38.15 0.24 2.77 16 8 C -0.14 -1.86 9.97 22.39 0.22 -1.64 16 9 C -0.10 -1.24 10.04 22.25 0.22 -1.01 16 10 C -0.14 -2.05 10.04 22.29 0.22 -1.83 16 11 C -0.12 -2.41 10.04 22.25 0.22 -2.19 16 12 C -0.15 -3.93 8.70 22.39 0.19 -3.74 16 13 S 2.61 79.67 5.32 -56.49 -0.30 79.37 16 14 O -0.99 -37.89 17.09 -127.65 -2.18 -40.07 16 15 O -0.99 -35.70 16.99 -127.65 -2.17 -37.87 16 16 C -0.60 -17.01 6.18 71.98 0.44 -16.57 16 17 C -0.11 -4.38 5.16 30.60 0.16 -4.22 16 18 C 0.03 1.63 4.97 29.84 0.15 1.78 16 19 C -0.55 -31.29 9.11 25.60 0.23 -31.05 16 20 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 21 C 0.00 0.24 5.46 84.66 0.46 0.70 16 22 N -0.93 -54.64 13.29 21.45 0.28 -54.36 16 23 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 26 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 27 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.08 1.36 7.79 -2.39 -0.02 1.34 16 29 H 0.11 1.02 7.94 -2.39 -0.02 1.00 16 30 H 0.14 1.48 7.61 -2.38 -0.02 1.46 16 31 H 0.17 0.57 7.96 -2.39 -0.02 0.55 16 32 H 0.43 2.90 8.82 -92.71 -0.82 2.08 16 33 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 34 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 35 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 36 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.10 3.36 6.23 -2.91 -0.02 3.34 16 38 H 0.16 3.53 8.14 -2.39 -0.02 3.51 16 39 H 0.15 3.65 8.14 -2.39 -0.02 3.63 16 40 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -88.94 386.66 0.02 -88.92 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.19 Total: 11.69 kcal Atomic # 6 Polarization: -45.99 SS G_CDS: 5.25 Total: -40.74 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -2.75 Total: -89.06 kcal Atomic # 8 Polarization: -91.84 SS G_CDS: -4.39 Total: -96.23 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 79.67 SS G_CDS: -0.30 Total: 79.37 kcal Total: -88.94 0.02 -88.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068878300.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.997 kcal (2) G-P(sol) polarization free energy of solvation -88.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds