Wall clock time and date at job start Sat Apr 11 2020 05:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45197 * 109.47061 * 2 1 4 4 C 1.34885 * 117.00307 * 180.02562 * 3 2 1 5 5 O 1.21641 * 119.99744 * 0.02562 * 4 3 2 6 6 C 1.46434 * 119.99935 * 179.97438 * 4 3 2 7 7 C 1.44687 * 123.61311 * 90.18138 * 6 4 3 8 8 C 1.50701 * 123.41259 * 0.06051 * 7 6 4 9 9 C 1.32499 * 113.17081 * 180.26118 * 7 6 4 10 10 C 1.50702 * 124.58557 * 179.79855 * 9 7 6 11 11 S 1.75463 * 110.83721 * 359.78098 * 9 7 6 12 12 C 1.37194 * 123.61050 * 270.02094 * 6 4 3 13 13 N 1.38606 * 124.65839 * 0.02562 * 12 6 4 14 14 C 1.34779 * 119.99304 * 179.72154 * 13 12 6 15 15 O 1.21274 * 120.00353 * 359.97438 * 14 13 12 16 16 C 1.50707 * 119.99787 * 180.02562 * 14 13 12 17 17 N 1.46495 * 109.47388 * 179.97438 * 16 14 13 18 18 C 1.46503 * 119.99736 * 89.99273 * 17 16 14 19 19 C 1.36935 * 120.00157 * 269.99851 * 17 16 14 20 20 H 1.08003 * 119.99758 * 23.04156 * 19 17 16 21 21 C 1.38811 * 120.00287 * 203.03823 * 19 17 16 22 22 N 1.31614 * 119.99517 * 12.95951 * 21 19 17 23 23 Si 1.86791 * 120.00132 * 192.95588 * 21 19 17 24 24 H 1.48500 * 109.47299 * 60.00210 * 23 21 19 25 25 H 1.48501 * 109.47096 * 180.02562 * 23 21 19 26 26 H 1.48509 * 109.47254 * 300.00087 * 23 21 19 27 27 H 1.09007 * 109.47002 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47215 * 299.99641 * 1 2 3 29 29 H 1.08995 * 109.47532 * 60.00089 * 1 2 3 30 30 H 1.08997 * 109.47395 * 240.00107 * 2 1 3 31 31 H 1.08995 * 109.47532 * 119.99911 * 2 1 3 32 32 H 1.08994 * 109.46936 * 270.24802 * 8 7 6 33 33 H 1.08998 * 109.47179 * 30.25149 * 8 7 6 34 34 H 1.09000 * 109.46848 * 150.24505 * 8 7 6 35 35 H 1.08999 * 109.47533 * 180.02562 * 10 9 7 36 36 H 1.09005 * 109.46908 * 300.00517 * 10 9 7 37 37 H 1.08997 * 109.47117 * 60.00188 * 10 9 7 38 38 H 0.97001 * 120.00455 * 359.71713 * 13 12 6 39 39 H 1.09006 * 109.46601 * 299.99831 * 16 14 13 40 40 H 1.09001 * 109.46981 * 59.99166 * 16 14 13 41 41 H 1.09003 * 109.46717 * 95.13269 * 18 17 16 42 42 H 1.08997 * 109.47042 * 215.12401 * 18 17 16 43 43 H 1.08992 * 109.47494 * 335.12545 * 18 17 16 44 44 H 0.97000 * 119.99742 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3512 1.5458 -0.0005 5 8 4.0922 0.5811 -0.0015 6 6 3.9108 2.8990 -0.0011 7 6 4.2208 3.6380 1.2035 8 6 4.0018 3.0927 2.5912 9 6 4.7128 4.8445 0.9628 10 6 5.1185 5.8309 2.0275 11 16 4.8288 5.1384 -0.7631 12 6 4.2002 3.6006 -1.1440 13 7 4.0027 3.1263 -2.4314 14 6 4.3158 3.8998 -3.4898 15 8 4.7698 5.0108 -3.3158 16 6 4.1006 3.3845 -4.8896 17 7 4.5146 4.4056 -5.8549 18 6 5.8962 4.4363 -6.3414 19 6 3.6103 5.3314 -6.3025 20 1 2.7367 5.5627 -5.7111 21 6 3.8165 5.9727 -7.5163 22 7 4.7266 5.5209 -8.3528 23 14 2.8023 7.4765 -7.9622 24 1 3.0252 8.5415 -6.9515 25 1 3.2122 7.9707 -9.3013 26 1 1.3627 7.1127 -7.9887 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.9975 3.3493 2.9280 33 1 4.1146 2.0086 2.5775 34 1 4.7351 3.5257 3.2716 35 1 5.4887 6.7418 1.5570 36 1 4.2559 6.0687 2.6501 37 1 5.9038 5.3959 2.6456 38 1 3.6392 2.2378 -2.5706 39 1 4.6923 2.4813 -5.0391 40 1 3.0448 3.1552 -5.0340 41 1 5.9615 3.8933 -7.2843 42 1 6.2041 5.4704 -6.4958 43 1 6.5507 3.9682 -5.6063 44 1 4.8710 5.9692 -9.2008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972883.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:25 Heat of formation + Delta-G solvation = -70.769843 kcal Electronic energy + Delta-G solvation = -27442.782600 eV Core-core repulsion = 23487.838213 eV Total energy + Delta-G solvation = -3954.944387 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.65715 -39.70730 -37.95372 -36.49231 -35.54654 -34.76929 -32.07205 -31.58476 -31.06882 -29.46547 -27.59290 -26.03707 -25.91087 -24.39816 -22.99568 -21.93153 -20.86431 -20.55040 -18.91118 -18.03010 -17.57409 -17.05700 -16.79220 -16.58728 -15.72832 -15.30881 -15.17282 -14.86259 -14.32676 -14.07076 -13.95136 -13.71726 -13.46032 -13.33529 -13.18461 -13.04577 -12.86066 -12.59018 -12.29697 -12.17128 -12.11243 -11.95028 -11.78712 -11.72167 -11.34735 -10.96387 -10.89327 -10.80053 -10.70857 -10.52949 -10.49498 -10.27578 -10.10754 -9.99142 -9.43173 -8.62842 -8.20562 -7.83686 -6.94030 -5.83328 -3.31133 1.01146 1.41669 1.89797 2.12408 2.27338 2.78288 3.06989 3.10167 3.37024 3.41487 3.44501 4.43160 4.66361 4.68787 4.75744 4.88372 4.96011 5.01934 5.17389 5.20772 5.36917 5.39595 5.43904 5.45155 5.51226 5.52469 5.57463 5.65092 5.68532 5.73539 5.82377 5.91540 6.05641 6.12495 6.23512 6.39732 6.51341 6.65833 7.24892 7.34452 7.61588 7.63642 7.73104 8.20518 8.35675 9.09273 9.69520 10.15750 11.21669 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011957 B = 0.003292 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.073843 B = 8502.431619 C = 9745.113953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.350 6.350 4 C 0.545 3.455 5 O -0.500 6.500 6 C -0.224 4.224 7 C -0.048 4.048 8 C -0.093 4.093 9 C -0.270 4.270 10 C -0.070 4.070 11 S 0.312 5.688 12 C 0.073 3.927 13 N -0.644 5.644 14 C 0.465 3.535 15 O -0.479 6.479 16 C 0.140 3.860 17 N -0.569 5.569 18 C 0.161 3.839 19 C -0.262 4.262 20 H 0.068 0.932 21 C 0.010 3.990 22 N -0.903 5.903 23 Si 0.909 3.091 24 H -0.282 1.282 25 H -0.289 1.289 26 H -0.281 1.281 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.411 0.589 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.039 0.961 42 H 0.046 0.954 43 H -0.001 1.001 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.103 -8.036 20.309 22.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.016 4.016 3 O -0.267 6.267 4 C 0.387 3.613 5 O -0.387 6.387 6 C -0.243 4.243 7 C -0.059 4.059 8 C -0.152 4.152 9 C -0.387 4.387 10 C -0.128 4.128 11 S 0.576 5.424 12 C -0.147 4.147 13 N -0.290 5.290 14 C 0.251 3.749 15 O -0.351 6.351 16 C 0.006 3.994 17 N -0.287 5.287 18 C 0.017 3.983 19 C -0.391 4.391 20 H 0.085 0.915 21 C -0.189 4.189 22 N -0.547 5.547 23 Si 0.739 3.261 24 H -0.208 1.208 25 H -0.215 1.215 26 H -0.208 1.208 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.248 0.752 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.017 0.983 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.993 -6.219 19.133 20.340 hybrid contribution -1.225 -1.207 0.531 1.800 sum -4.218 -7.426 19.664 21.439 Atomic orbital electron populations 1.21807 0.92510 1.02921 1.03724 1.23067 0.95536 0.80403 1.02616 1.86767 1.24147 1.32002 1.83772 1.20407 0.80335 0.89027 0.71531 1.90879 1.60550 1.42523 1.44789 1.18550 1.17985 0.95648 0.92119 1.19000 1.00633 0.92663 0.93608 1.20465 1.02213 1.00695 0.91836 1.24647 1.12025 0.99905 1.02143 1.20161 1.01256 0.96196 0.95211 1.84471 1.58954 1.05617 0.93404 1.22048 1.02858 1.01554 0.88203 1.43816 1.63107 1.20140 1.01906 1.24786 0.75873 0.85736 0.88542 1.90552 1.41193 1.19448 1.83891 1.20674 1.01376 0.92921 0.84441 1.43640 1.08089 1.31960 1.45002 1.20901 0.81941 1.00545 0.94939 1.19087 1.03960 1.15519 1.00551 0.91453 1.24989 0.98716 0.99881 0.95323 1.70059 1.35641 1.40012 1.08954 0.86268 0.79624 0.82922 0.77323 1.20812 1.21473 1.20761 0.90238 0.91497 0.91254 0.91099 0.91278 0.90969 0.92102 0.90968 0.91625 0.91135 0.91147 0.75243 0.90423 0.89341 0.94310 0.93544 0.98266 0.93433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.29 37.16 0.38 -0.70 16 2 C 0.06 0.56 6.20 37.16 0.23 0.79 16 3 O -0.35 -4.51 10.23 -41.00 -0.42 -4.93 16 4 C 0.55 7.99 6.24 34.03 0.21 8.20 16 5 O -0.50 -8.20 16.91 -19.38 -0.33 -8.53 16 6 C -0.22 -3.39 5.87 -104.43 -0.61 -4.00 16 7 C -0.05 -0.64 6.00 -103.99 -0.62 -1.27 16 8 C -0.09 -0.96 9.67 36.01 0.35 -0.61 16 9 C -0.27 -3.48 6.42 -36.22 -0.23 -3.71 16 10 C -0.07 -0.65 9.44 36.01 0.34 -0.31 16 11 S 0.31 4.85 19.92 -107.50 -2.14 2.70 16 12 C 0.07 1.18 6.99 -14.86 -0.10 1.07 16 13 N -0.64 -10.18 5.37 -11.61 -0.06 -10.24 16 14 C 0.47 8.76 7.86 -10.98 -0.09 8.68 16 15 O -0.48 -10.61 13.85 5.56 0.08 -10.53 16 16 C 0.14 2.68 6.12 -5.19 -0.03 2.65 16 17 N -0.57 -14.07 2.41 -182.50 -0.44 -14.51 16 18 C 0.16 3.96 8.98 59.85 0.54 4.50 16 19 C -0.26 -7.14 9.65 -15.06 -0.15 -7.29 16 20 H 0.07 1.82 7.86 -52.48 -0.41 1.40 16 21 C 0.01 0.28 5.10 -17.43 -0.09 0.19 16 22 N -0.90 -25.83 10.71 55.49 0.59 -25.24 16 23 Si 0.91 21.82 29.57 -169.99 -5.03 16.80 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 27 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.66 7.70 -51.93 -0.40 0.26 16 34 H 0.07 0.61 7.36 -51.93 -0.38 0.23 16 35 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.57 7.93 -51.93 -0.41 0.16 16 38 H 0.41 5.47 8.16 -40.82 -0.33 5.14 16 39 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 40 H 0.09 1.56 8.04 -51.93 -0.42 1.14 16 41 H 0.04 1.00 7.34 -51.93 -0.38 0.62 16 42 H 0.05 1.25 7.34 -51.93 -0.38 0.87 16 43 H 0.00 -0.03 8.03 -51.93 -0.42 -0.45 16 44 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 386.40 15.07 5.82 5.82 Total: -1.00 -33.29 386.40 -8.27 -41.56 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.47 Total: -1.08 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 0.12 Total: 8.17 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.09 Total: -49.99 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.67 Total: -23.99 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.80 kcal Atomic # 16 Polarization: 4.85 SS G_CDS: -2.14 Total: 2.70 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.29 -8.27 -41.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972883.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.210 kcal (2) G-P(sol) polarization free energy of solvation -33.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds