Wall clock time and date at job start Sat Apr 11 2020 05:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99711 * 2 1 4 4 C 1.50709 * 109.47048 * 293.95414 * 3 2 1 5 5 H 1.07994 * 119.99428 * 359.97438 * 4 3 2 6 6 C 1.37872 * 119.99821 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99994 * 179.97438 * 6 4 3 8 8 Si 1.86805 * 120.00121 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.46777 * 90.00150 * 8 6 4 10 10 H 1.48502 * 109.47098 * 210.00041 * 8 6 4 11 11 H 1.48498 * 109.47270 * 330.00444 * 8 6 4 12 12 C 1.46901 * 111.00106 * 123.95068 * 2 1 3 13 13 C 1.50696 * 109.46901 * 66.04853 * 12 2 1 14 14 O 1.21282 * 120.00325 * 359.97438 * 13 12 2 15 15 N 1.34777 * 119.99799 * 179.97438 * 13 12 2 16 16 C 1.46495 * 120.00045 * 359.97438 * 15 13 12 17 17 C 1.46505 * 119.99775 * 180.02562 * 15 13 12 18 18 C 1.53002 * 109.46793 * 90.00344 * 17 15 13 19 19 O 1.42893 * 109.47763 * 64.99985 * 18 17 15 20 20 C 1.35916 * 117.00323 * 179.97438 * 19 18 17 21 21 C 1.38728 * 120.04362 * 0.27384 * 20 19 18 22 22 C 1.38137 * 119.95782 * 180.23553 * 21 20 19 23 23 C 1.38365 * 120.04335 * 359.48598 * 22 21 20 24 24 Cl 1.73604 * 119.96019 * 180.27880 * 23 22 21 25 25 C 1.38371 * 120.08418 * 0.25849 * 23 22 21 26 26 C 1.38143 * 120.04298 * 0.02562 * 25 23 22 27 27 H 1.09002 * 109.47599 * 296.04670 * 1 2 3 28 28 H 1.09004 * 109.47487 * 56.04873 * 1 2 3 29 29 H 1.09002 * 109.46982 * 176.04595 * 1 2 3 30 30 H 1.09000 * 109.47226 * 53.94877 * 3 2 1 31 31 H 1.09004 * 109.47371 * 173.95479 * 3 2 1 32 32 H 0.97001 * 120.00191 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.47266 * 306.04926 * 12 2 1 34 34 H 1.08994 * 109.47082 * 186.04928 * 12 2 1 35 35 H 1.08996 * 109.47407 * 269.99630 * 16 15 13 36 36 H 1.08992 * 109.47527 * 30.00336 * 16 15 13 37 37 H 1.09004 * 109.46975 * 150.00241 * 16 15 13 38 38 H 1.09000 * 109.47183 * 329.99871 * 17 15 13 39 39 H 1.09008 * 109.46874 * 209.99726 * 17 15 13 40 40 H 1.08998 * 109.47155 * 304.99297 * 18 17 15 41 41 H 1.09008 * 109.46599 * 184.99743 * 18 17 15 42 42 H 1.07998 * 120.01718 * 359.97438 * 21 20 19 43 43 H 1.08002 * 119.98114 * 179.77139 * 22 21 20 44 44 H 1.08001 * 119.97793 * 180.02562 * 25 23 22 45 45 H 1.07998 * 120.01925 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0745 1.5112 -2.0488 6 6 2.0275 3.3491 -1.5290 7 7 1.7150 3.9386 -2.6623 8 14 3.0006 4.2759 -0.2314 9 1 4.4530 4.0625 -0.4557 10 1 2.6933 5.7258 -0.3238 11 1 2.6293 3.7761 1.1168 12 6 1.9955 -0.7659 1.1376 13 6 1.6370 -2.2203 0.9729 14 8 1.0048 -2.5831 0.0036 15 7 2.0190 -3.1180 1.9028 16 6 2.7831 -2.6799 3.0734 17 6 1.6710 -4.5320 1.7424 18 6 2.7806 -5.2455 0.9674 19 8 3.9825 -5.2374 1.7402 20 6 5.0728 -5.8358 1.1920 21 6 4.9886 -6.4137 -0.0664 22 6 6.0965 -7.0257 -0.6199 23 6 7.2924 -7.0532 0.0754 24 17 8.6853 -7.8165 -0.6253 25 6 7.3798 -6.4727 1.3284 26 6 6.2725 -5.8649 1.8878 27 1 -0.3634 0.4512 0.9233 28 1 -0.3634 0.5739 -0.8525 29 1 -0.3633 -1.0252 -0.0709 30 1 1.5609 1.9274 0.8309 31 1 3.0797 1.3445 0.1082 32 1 1.9895 4.8548 -2.8243 33 1 1.5611 -0.3872 2.0629 34 1 3.0797 -0.6610 1.1757 35 1 3.8490 -2.7297 2.8510 36 1 2.5112 -1.6541 3.3218 37 1 2.5577 -3.3303 3.9186 38 1 0.7329 -4.6153 1.1935 39 1 1.5596 -4.9924 2.7242 40 1 2.9528 -4.7305 0.0224 41 1 2.4820 -6.2753 0.7709 42 1 4.0564 -6.3888 -0.6111 43 1 6.0304 -7.4790 -1.5979 44 1 8.3142 -6.4948 1.8695 45 1 6.3412 -5.4115 2.8656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078645926.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:48 Heat of formation + Delta-G solvation = -32.649321 kcal Electronic energy + Delta-G solvation = -26718.287389 eV Core-core repulsion = 22762.952325 eV Total energy + Delta-G solvation = -3955.335064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.61378 -39.79169 -38.07251 -36.61698 -36.25437 -35.33652 -32.47956 -31.76778 -31.17237 -29.62989 -28.45873 -27.29466 -26.54250 -24.65485 -23.58192 -22.85819 -22.03714 -20.38820 -19.12302 -18.65442 -17.12244 -16.89587 -16.74913 -16.62455 -16.44070 -15.57934 -15.42210 -14.98534 -14.47417 -14.28387 -14.16862 -13.95082 -13.77532 -13.67044 -13.36894 -13.07092 -12.80345 -12.70283 -12.52163 -12.41550 -12.20352 -12.01390 -11.92788 -11.71835 -11.50991 -11.13554 -11.06211 -10.94820 -10.93053 -10.56021 -10.53865 -9.98262 -9.51388 -9.47097 -9.20185 -8.74900 -8.56717 -8.46954 -7.37622 -6.04000 -4.01515 0.83710 0.86766 1.84792 2.71974 2.81803 2.98216 3.24706 3.27705 3.34989 3.35446 4.32163 4.40970 4.41494 4.52724 4.64990 4.74916 4.82754 4.86167 4.93609 4.97054 5.05323 5.10364 5.27577 5.31463 5.35145 5.45345 5.50193 5.60296 5.62271 5.64388 5.69354 5.86081 5.87331 6.18031 6.20060 6.28613 6.41758 6.74646 6.85843 6.98494 7.00313 7.29797 7.56725 7.87677 7.98996 8.37422 8.65969 9.06375 9.56755 11.09170 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011761 B = 0.002281 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.270696 B =12274.633983 C =13544.705246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.515 5.515 3 C 0.163 3.837 4 C -0.508 4.508 5 H 0.082 0.918 6 C 0.068 3.932 7 N -0.899 5.899 8 Si 0.875 3.125 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.037 3.963 13 C 0.517 3.483 14 O -0.515 6.515 15 N -0.623 5.623 16 C 0.084 3.916 17 C 0.123 3.877 18 C 0.039 3.961 19 O -0.306 6.306 20 C 0.141 3.859 21 C -0.197 4.197 22 C -0.067 4.067 23 C -0.077 4.077 24 Cl -0.075 7.075 25 C -0.071 4.071 26 C -0.142 4.142 27 H 0.005 0.995 28 H 0.080 0.920 29 H 0.067 0.933 30 H -0.010 1.010 31 H 0.024 0.976 32 H 0.264 0.736 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.138 0.862 43 H 0.135 0.865 44 H 0.139 0.861 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.099 -24.613 14.003 29.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.239 5.239 3 C 0.037 3.963 4 C -0.546 4.546 5 H 0.100 0.900 6 C -0.134 4.134 7 N -0.539 5.539 8 Si 0.702 3.298 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.095 4.095 13 C 0.306 3.694 14 O -0.389 6.389 15 N -0.360 5.360 16 C -0.059 4.059 17 C -0.001 4.001 18 C -0.037 4.037 19 O -0.219 6.219 20 C 0.095 3.905 21 C -0.216 4.216 22 C -0.086 4.086 23 C -0.103 4.103 24 Cl -0.046 7.046 25 C -0.089 4.089 26 C -0.161 4.161 27 H 0.023 0.977 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.007 0.993 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.124 0.876 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.156 0.844 43 H 0.153 0.847 44 H 0.157 0.843 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.006 -24.797 13.054 29.144 hybrid contribution 0.505 0.867 1.109 1.496 sum 8.511 -23.930 14.164 29.081 Atomic orbital electron populations 1.22397 0.87346 1.01544 1.00278 1.61682 1.08327 1.15957 1.37944 1.20236 0.94828 0.83656 0.97617 1.21014 1.35638 0.97177 1.00778 0.89956 1.24899 0.95844 0.97316 0.95312 1.69892 1.46870 1.13269 1.23821 0.86870 0.80913 0.79347 0.82657 1.20114 1.21172 1.19316 1.22022 1.01860 0.90682 0.94939 1.20971 0.78496 0.88283 0.81698 1.90656 1.38561 1.80422 1.29280 1.47896 1.56893 1.07067 1.24097 1.21775 0.96235 1.00631 0.87238 1.21459 0.96363 0.80856 1.01391 1.23465 0.83339 1.00936 0.95953 1.86087 1.17949 1.72772 1.45122 1.19100 0.87656 0.91950 0.91785 1.21283 1.00354 1.03867 0.96080 1.20860 0.90586 0.97471 0.99707 1.20781 0.89297 1.04264 0.96007 1.98366 1.41603 1.80444 1.84204 1.20857 0.98818 0.95861 0.93406 1.20378 0.90078 1.04057 1.01600 0.97656 0.90124 0.91491 0.99265 0.95832 0.92647 0.92991 0.88540 0.92263 0.91075 0.91267 0.87580 0.89586 0.90871 0.91004 0.84447 0.84673 0.84342 0.84248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 9.03 60.06 0.54 1.22 16 2 N -0.51 -11.28 4.49 -245.82 -1.10 -12.38 16 3 C 0.16 3.97 3.79 -4.97 -0.02 3.95 16 4 C -0.51 -14.67 9.01 -34.44 -0.31 -14.98 16 5 H 0.08 2.62 7.37 -52.49 -0.39 2.23 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 8 Si 0.87 21.35 27.47 -169.99 -4.67 16.68 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 12 C 0.04 0.61 4.00 -4.98 -0.02 0.59 16 13 C 0.52 8.11 7.40 -10.99 -0.08 8.03 16 14 O -0.52 -9.82 13.89 5.56 0.08 -9.74 16 15 N -0.62 -7.09 2.84 -181.57 -0.52 -7.60 16 16 C 0.08 0.72 9.88 59.84 0.59 1.31 16 17 C 0.12 1.11 5.86 -4.04 -0.02 1.09 16 18 C 0.04 0.35 5.08 37.16 0.19 0.54 16 19 O -0.31 -2.96 9.69 -19.48 -0.19 -3.15 16 20 C 0.14 1.36 6.69 -39.22 -0.26 1.10 16 21 C -0.20 -1.80 9.04 -39.44 -0.36 -2.16 16 22 C -0.07 -0.60 9.82 -39.57 -0.39 -0.99 16 23 C -0.08 -0.69 6.32 -39.49 -0.25 -0.94 16 24 Cl -0.07 -0.65 28.95 -51.86 -1.50 -2.15 16 25 C -0.07 -0.58 9.82 -39.57 -0.39 -0.97 16 26 C -0.14 -1.21 9.99 -39.44 -0.39 -1.61 16 27 H 0.00 0.10 8.14 -51.93 -0.42 -0.33 16 28 H 0.08 1.85 6.76 -51.93 -0.35 1.50 16 29 H 0.07 1.34 5.88 -51.93 -0.31 1.03 16 30 H -0.01 -0.25 7.18 -51.93 -0.37 -0.62 16 31 H 0.02 0.56 7.36 -51.93 -0.38 0.18 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.05 0.78 7.38 -51.93 -0.38 0.39 16 34 H 0.10 1.50 7.90 -51.93 -0.41 1.09 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.58 6.44 -51.93 -0.33 0.25 16 37 H 0.07 0.45 7.89 -51.93 -0.41 0.04 16 38 H 0.11 1.03 7.42 -51.93 -0.39 0.64 16 39 H 0.09 0.57 7.90 -51.92 -0.41 0.16 16 40 H 0.07 0.82 7.65 -51.93 -0.40 0.42 16 41 H 0.07 0.49 7.67 -51.92 -0.40 0.09 16 42 H 0.14 1.11 6.30 -52.49 -0.33 0.78 16 43 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 44 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 383.10 15.07 5.77 5.77 Total: -1.00 -34.18 383.10 -9.16 -43.35 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -6.54 Total: -1.83 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -1.27 Total: -1.93 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: -0.85 Total: -47.00 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.11 Total: -12.89 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.18 -9.16 -43.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078645926.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.697 kcal (2) G-P(sol) polarization free energy of solvation -34.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds