Wall clock time and date at job start Sat Apr 11 2020 05:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99711 * 2 1 4 4 C 1.50709 * 109.47048 * 293.95414 * 3 2 1 5 5 H 1.07994 * 119.99428 * 359.97438 * 4 3 2 6 6 C 1.37872 * 119.99821 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99994 * 179.97438 * 6 4 3 8 8 Si 1.86805 * 120.00121 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.46777 * 90.00150 * 8 6 4 10 10 H 1.48502 * 109.47098 * 210.00041 * 8 6 4 11 11 H 1.48498 * 109.47270 * 330.00444 * 8 6 4 12 12 C 1.46901 * 111.00106 * 123.95068 * 2 1 3 13 13 C 1.50696 * 109.46901 * 66.04853 * 12 2 1 14 14 O 1.21282 * 120.00325 * 359.97438 * 13 12 2 15 15 N 1.34777 * 119.99799 * 179.97438 * 13 12 2 16 16 C 1.46495 * 120.00045 * 359.97438 * 15 13 12 17 17 C 1.46505 * 119.99775 * 180.02562 * 15 13 12 18 18 C 1.53002 * 109.46793 * 90.00344 * 17 15 13 19 19 O 1.42893 * 109.47763 * 64.99985 * 18 17 15 20 20 C 1.35916 * 117.00323 * 179.97438 * 19 18 17 21 21 C 1.38728 * 120.04362 * 0.27384 * 20 19 18 22 22 C 1.38137 * 119.95782 * 180.23553 * 21 20 19 23 23 C 1.38365 * 120.04335 * 359.48598 * 22 21 20 24 24 Cl 1.73604 * 119.96019 * 180.27880 * 23 22 21 25 25 C 1.38371 * 120.08418 * 0.25849 * 23 22 21 26 26 C 1.38143 * 120.04298 * 0.02562 * 25 23 22 27 27 H 1.09002 * 109.47599 * 296.04670 * 1 2 3 28 28 H 1.09004 * 109.47487 * 56.04873 * 1 2 3 29 29 H 1.09002 * 109.46982 * 176.04595 * 1 2 3 30 30 H 1.09000 * 109.47226 * 53.94877 * 3 2 1 31 31 H 1.09004 * 109.47371 * 173.95479 * 3 2 1 32 32 H 0.97001 * 120.00191 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.47266 * 306.04926 * 12 2 1 34 34 H 1.08994 * 109.47082 * 186.04928 * 12 2 1 35 35 H 1.08996 * 109.47407 * 269.99630 * 16 15 13 36 36 H 1.08992 * 109.47527 * 30.00336 * 16 15 13 37 37 H 1.09004 * 109.46975 * 150.00241 * 16 15 13 38 38 H 1.09000 * 109.47183 * 329.99871 * 17 15 13 39 39 H 1.09008 * 109.46874 * 209.99726 * 17 15 13 40 40 H 1.08998 * 109.47155 * 304.99297 * 18 17 15 41 41 H 1.09008 * 109.46599 * 184.99743 * 18 17 15 42 42 H 1.07998 * 120.01718 * 359.97438 * 21 20 19 43 43 H 1.08002 * 119.98114 * 179.77139 * 22 21 20 44 44 H 1.08001 * 119.97793 * 180.02562 * 25 23 22 45 45 H 1.07998 * 120.01925 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0745 1.5112 -2.0488 6 6 2.0275 3.3491 -1.5290 7 7 1.7150 3.9386 -2.6623 8 14 3.0006 4.2759 -0.2314 9 1 4.4530 4.0625 -0.4557 10 1 2.6933 5.7258 -0.3238 11 1 2.6293 3.7761 1.1168 12 6 1.9955 -0.7659 1.1376 13 6 1.6370 -2.2203 0.9729 14 8 1.0048 -2.5831 0.0036 15 7 2.0190 -3.1180 1.9028 16 6 2.7831 -2.6799 3.0734 17 6 1.6710 -4.5320 1.7424 18 6 2.7806 -5.2455 0.9674 19 8 3.9825 -5.2374 1.7402 20 6 5.0728 -5.8358 1.1920 21 6 4.9886 -6.4137 -0.0664 22 6 6.0965 -7.0257 -0.6199 23 6 7.2924 -7.0532 0.0754 24 17 8.6853 -7.8165 -0.6253 25 6 7.3798 -6.4727 1.3284 26 6 6.2725 -5.8649 1.8878 27 1 -0.3634 0.4512 0.9233 28 1 -0.3634 0.5739 -0.8525 29 1 -0.3633 -1.0252 -0.0709 30 1 1.5609 1.9274 0.8309 31 1 3.0797 1.3445 0.1082 32 1 1.9895 4.8548 -2.8243 33 1 1.5611 -0.3872 2.0629 34 1 3.0797 -0.6610 1.1757 35 1 3.8490 -2.7297 2.8510 36 1 2.5112 -1.6541 3.3218 37 1 2.5577 -3.3303 3.9186 38 1 0.7329 -4.6153 1.1935 39 1 1.5596 -4.9924 2.7242 40 1 2.9528 -4.7305 0.0224 41 1 2.4820 -6.2753 0.7709 42 1 4.0564 -6.3888 -0.6111 43 1 6.0304 -7.4790 -1.5979 44 1 8.3142 -6.4948 1.8695 45 1 6.3412 -5.4115 2.8656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078645926.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:47 Heat of formation + Delta-G solvation = -55.329301 kcal Electronic energy + Delta-G solvation = -26719.270867 eV Core-core repulsion = 22762.952325 eV Total energy + Delta-G solvation = -3956.318542 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.38869 -40.83499 -38.81462 -37.89425 -37.18335 -36.42110 -34.61752 -32.50650 -31.94376 -30.56305 -29.99507 -28.79476 -27.37103 -26.08541 -24.72233 -23.58601 -22.89485 -22.07918 -20.16921 -19.41504 -18.94212 -18.10119 -17.60964 -17.45309 -17.25749 -16.71300 -16.45989 -16.20487 -15.83653 -15.67634 -15.53402 -14.89559 -14.71068 -14.56431 -14.42767 -14.24043 -14.03758 -13.69783 -13.53942 -13.47403 -13.30567 -13.07846 -12.87114 -12.80774 -12.63365 -12.59381 -12.38433 -12.25476 -12.17568 -11.88590 -11.71531 -11.63857 -11.52945 -10.77558 -10.67076 -10.15482 -9.68438 -9.15291 -9.02097 -8.26826 -6.31628 0.17439 0.20694 1.18058 1.36744 1.39574 1.49904 1.61327 1.92279 2.17385 2.36345 2.58458 3.05851 3.26037 3.64103 3.67766 3.79101 3.95859 4.05363 4.10595 4.22511 4.25168 4.32379 4.34097 4.44767 4.45016 4.51805 4.60462 4.63752 4.72211 4.81399 4.88750 4.90354 4.97168 5.00036 5.03456 5.20079 5.21064 5.23405 5.51297 5.53290 5.57449 5.93377 6.22840 6.29162 6.36874 6.64256 6.74837 7.23192 7.31815 8.90317 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011761 B = 0.002281 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.270696 B =12274.633983 C =13544.705246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.543 5.543 3 C 0.174 3.826 4 C -0.521 4.521 5 H 0.030 0.970 6 C 0.003 3.997 7 N -0.951 5.951 8 Si 0.954 3.046 9 H -0.264 1.264 10 H -0.283 1.283 11 H -0.242 1.242 12 C 0.035 3.965 13 C 0.515 3.485 14 O -0.561 6.561 15 N -0.613 5.613 16 C 0.077 3.923 17 C 0.120 3.880 18 C 0.044 3.956 19 O -0.308 6.308 20 C 0.126 3.874 21 C -0.207 4.207 22 C -0.076 4.076 23 C -0.088 4.088 24 Cl -0.075 7.075 25 C -0.072 4.072 26 C -0.144 4.144 27 H 0.023 0.977 28 H 0.043 0.957 29 H 0.073 0.927 30 H -0.001 1.001 31 H 0.036 0.964 32 H 0.267 0.733 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.120 0.880 40 H 0.045 0.955 41 H 0.094 0.906 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.158 0.842 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.684 -25.326 17.684 32.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.268 5.268 3 C 0.047 3.953 4 C -0.559 4.559 5 H 0.048 0.952 6 C -0.194 4.194 7 N -0.592 5.592 8 Si 0.777 3.223 9 H -0.188 1.188 10 H -0.209 1.209 11 H -0.166 1.166 12 C -0.095 4.095 13 C 0.304 3.696 14 O -0.439 6.439 15 N -0.347 5.347 16 C -0.064 4.064 17 C -0.002 4.002 18 C -0.033 4.033 19 O -0.222 6.222 20 C 0.080 3.920 21 C -0.226 4.226 22 C -0.095 4.095 23 C -0.114 4.114 24 Cl -0.046 7.046 25 C -0.090 4.090 26 C -0.162 4.162 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.016 0.984 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.128 0.872 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.138 0.862 40 H 0.064 0.936 41 H 0.112 0.888 42 H 0.160 0.840 43 H 0.162 0.838 44 H 0.176 0.824 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 9.609 -25.561 16.789 32.056 hybrid contribution 0.005 0.962 -0.076 0.965 sum 9.614 -24.599 16.713 31.255 Atomic orbital electron populations 1.22213 0.87302 1.01389 0.99488 1.61477 1.08686 1.15035 1.41558 1.19991 0.95415 0.84891 0.94999 1.21258 1.35101 0.97648 1.01881 0.95214 1.25954 0.97062 0.98351 0.97986 1.70072 1.48636 1.13921 1.26566 0.85620 0.79228 0.77400 0.80099 1.18844 1.20887 1.16562 1.22107 1.02585 0.90871 0.93986 1.20805 0.78408 0.88469 0.81930 1.90642 1.40980 1.80988 1.31321 1.47901 1.55685 1.07425 1.23640 1.22025 0.95887 1.01776 0.86751 1.21657 0.95922 0.79546 1.03117 1.23390 0.83305 1.01888 0.94669 1.86058 1.18044 1.72991 1.45064 1.19319 0.88082 0.92446 0.92181 1.21414 1.00739 1.04087 0.96313 1.21033 0.90628 0.97589 1.00257 1.20961 0.89358 1.04583 0.96526 1.98364 1.41531 1.80467 1.84268 1.21117 0.99585 0.95156 0.93149 1.20625 0.89625 1.03766 1.02234 0.95842 0.93774 0.90854 0.98384 0.94633 0.92410 0.90223 0.87176 0.92087 0.90392 0.88460 0.88413 0.86246 0.93628 0.88768 0.84034 0.83769 0.82426 0.82512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.87 9.03 127.69 1.15 3.02 16 2 N -0.54 -23.66 4.49 -931.63 -4.18 -27.84 16 3 C 0.17 8.32 3.79 85.56 0.32 8.64 16 4 C -0.52 -30.98 9.01 25.60 0.23 -30.75 16 5 H 0.03 2.02 7.37 -2.91 -0.02 2.00 16 6 C 0.00 0.19 5.47 84.65 0.46 0.66 16 7 N -0.95 -60.66 13.96 21.45 0.30 -60.36 16 8 Si 0.95 43.43 27.47 68.60 1.88 45.32 16 9 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.24 -9.95 6.54 99.48 0.65 -9.30 16 12 C 0.04 1.11 4.00 85.56 0.34 1.45 16 13 C 0.52 15.51 7.40 87.66 0.65 16.16 16 14 O -0.56 -21.56 13.89 -3.04 -0.04 -21.60 16 15 N -0.61 -12.43 2.84 -846.76 -2.40 -14.83 16 16 C 0.08 1.03 9.88 127.77 1.26 2.29 16 17 C 0.12 1.91 5.86 86.38 0.51 2.41 16 18 C 0.04 0.72 5.08 71.98 0.37 1.09 16 19 O -0.31 -5.31 9.69 -92.61 -0.90 -6.21 16 20 C 0.13 2.23 6.69 22.50 0.15 2.38 16 21 C -0.21 -3.63 9.04 22.36 0.20 -3.43 16 22 C -0.08 -1.30 9.82 22.28 0.22 -1.08 16 23 C -0.09 -1.48 6.32 22.33 0.14 -1.33 16 24 Cl -0.07 -1.22 28.95 -2.72 -0.08 -1.30 16 25 C -0.07 -1.04 9.82 22.28 0.22 -0.82 16 26 C -0.14 -2.16 9.99 22.36 0.22 -1.93 16 27 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.04 2.14 6.76 -2.38 -0.02 2.12 16 29 H 0.07 2.99 5.88 -2.39 -0.01 2.98 16 30 H 0.00 -0.07 7.18 -2.39 -0.02 -0.08 16 31 H 0.04 1.62 7.36 -2.39 -0.02 1.60 16 32 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 33 H 0.08 2.08 7.38 -2.39 -0.02 2.06 16 34 H 0.11 3.12 7.90 -2.39 -0.02 3.11 16 35 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.08 0.95 6.44 -2.39 -0.02 0.94 16 37 H 0.10 0.79 7.89 -2.38 -0.02 0.77 16 38 H 0.10 1.78 7.42 -2.39 -0.02 1.76 16 39 H 0.12 1.13 7.90 -2.38 -0.02 1.12 16 40 H 0.05 1.02 7.65 -2.39 -0.02 1.00 16 41 H 0.09 1.13 7.67 -2.38 -0.02 1.11 16 42 H 0.14 2.25 6.30 -2.91 -0.02 2.23 16 43 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 44 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 45 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -77.40 383.10 1.97 -75.43 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.94 Total: 12.65 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 6.45 Total: -1.26 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -6.29 Total: -103.03 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.94 Total: -27.81 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.88 Total: 45.32 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.30 kcal Total: -77.40 1.97 -75.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078645926.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.104 kcal (2) G-P(sol) polarization free energy of solvation -77.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds