Wall clock time and date at job start Sat Apr 11 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42905 * 109.47364 * 84.47880 * 3 2 1 5 5 C 1.42891 * 113.99941 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.47643 * 330.00276 * 5 4 3 7 7 C 1.52995 * 109.47402 * 90.00377 * 5 4 3 8 8 C 1.50705 * 109.47365 * 209.99937 * 5 4 3 9 9 O 1.21287 * 119.99413 * 355.00626 * 8 5 4 10 10 N 1.34774 * 120.00446 * 174.99700 * 8 5 4 11 11 C 1.47577 * 134.49130 * 4.99928 * 10 8 5 12 12 C 1.53946 * 86.11542 * 204.63455 * 11 10 8 13 13 C 1.47577 * 134.49169 * 184.98314 * 10 8 5 14 14 H 1.08999 * 113.87587 * 269.67834 * 13 10 8 15 15 C 1.52995 * 113.76949 * 41.06972 * 13 10 8 16 16 N 1.46510 * 109.46969 * 279.22165 * 15 13 10 17 17 C 1.34772 * 119.99673 * 174.84123 * 16 15 13 18 18 O 1.21281 * 120.00742 * 0.02562 * 17 16 15 19 19 C 1.50707 * 119.99431 * 180.27585 * 17 16 15 20 20 S 1.81004 * 109.46810 * 179.72638 * 19 17 16 21 21 C 1.76204 * 99.99919 * 180.02562 * 20 19 17 22 22 H 1.08001 * 119.99609 * 359.97438 * 21 20 19 23 23 C 1.38790 * 120.00235 * 180.02562 * 21 20 19 24 24 N 1.31634 * 120.00142 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 120.00225 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47058 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.46982 * 119.99876 * 25 23 21 28 28 H 1.48500 * 109.46847 * 239.99458 * 25 23 21 29 29 H 4.38451 * 5.44571 * 180.02562 * 4 1 2 30 30 H 1.09003 * 109.47649 * 324.47930 * 3 2 1 31 31 H 1.09006 * 109.46938 * 204.47724 * 3 2 1 32 32 H 1.09000 * 109.47219 * 59.99643 * 7 5 4 33 33 H 1.09003 * 109.47759 * 179.97438 * 7 5 4 34 34 H 1.09004 * 109.47142 * 300.00021 * 7 5 4 35 35 H 1.08992 * 113.77634 * 90.33028 * 11 10 8 36 36 H 1.09001 * 113.76766 * 318.92871 * 11 10 8 37 37 H 1.09007 * 113.73978 * 222.04344 * 12 11 10 38 38 H 1.08996 * 113.84492 * 90.74829 * 12 11 10 39 39 H 1.09004 * 109.47579 * 159.22373 * 15 13 10 40 40 H 1.08994 * 109.47514 * 39.22383 * 15 13 10 41 41 H 0.96994 * 119.99655 * 354.84139 * 16 15 13 42 42 H 1.09000 * 109.47447 * 299.72563 * 19 17 16 43 43 H 1.08996 * 109.46766 * 59.72969 * 19 17 16 44 44 H 0.97002 * 120.00516 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1224 -0.1288 -1.3410 5 6 4.5469 -0.1384 -1.4533 6 1 4.9789 0.4561 -0.6483 7 6 5.0566 -1.5775 -1.3545 8 6 4.9500 0.4470 -2.7822 9 8 4.1012 0.7506 -3.5937 10 7 6.2537 0.6335 -3.0689 11 6 7.5200 0.3055 -2.3857 12 6 8.1317 1.4699 -3.1858 13 6 6.9881 1.2472 -4.1922 14 1 7.2360 0.5488 -4.9914 15 6 6.3581 2.5433 -4.7061 16 7 5.2440 2.2228 -5.6020 17 6 4.4705 3.2102 -6.0952 18 8 4.6969 4.3640 -5.7978 19 6 3.3207 2.8800 -7.0119 20 16 2.4762 4.4066 -7.4943 21 6 1.2150 3.7440 -8.5311 22 1 1.1539 2.6779 -8.6931 23 6 0.3009 4.5920 -9.1405 24 7 0.3757 5.8914 -8.9435 25 14 -1.0358 3.8896 -10.2404 26 1 -0.9031 2.4117 -10.2984 27 1 -2.3680 4.2463 -9.6898 28 1 -0.8983 4.4527 -11.6076 29 1 -1.0500 0.0002 -0.0001 30 1 3.0098 -0.8356 0.5971 31 1 3.0088 0.9362 0.4258 32 1 4.6246 -2.1721 -2.1595 33 1 6.1432 -1.5850 -1.4406 34 1 4.7650 -2.0011 -0.3934 35 1 7.9235 -0.6710 -2.6531 36 1 7.4958 0.4770 -1.3095 37 1 9.1205 1.2529 -3.5900 38 1 8.0838 2.4302 -2.6725 39 1 7.1063 3.1208 -5.2490 40 1 5.9897 3.1275 -3.8629 41 1 5.0632 1.3001 -5.8402 42 1 3.6985 2.3769 -7.9020 43 1 2.6200 2.2251 -6.4942 44 1 -0.2634 6.4841 -9.3691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738641696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:42 Heat of formation + Delta-G solvation = -17.234234 kcal Electronic energy + Delta-G solvation = -26783.646596 eV Core-core repulsion = 22831.023687 eV Total energy + Delta-G solvation = -3952.622909 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.93082 -39.13269 -38.58309 -37.38030 -34.27565 -33.69786 -32.31736 -32.09453 -30.06776 -29.53414 -27.60926 -27.43724 -25.37079 -24.67258 -23.44351 -21.92172 -20.21309 -19.45157 -18.75679 -17.76776 -17.37866 -17.16139 -16.67376 -16.26512 -15.94613 -15.87064 -15.15443 -14.99151 -14.70382 -14.57988 -14.39552 -13.83044 -13.79203 -13.50014 -13.07596 -13.00019 -12.77892 -12.69530 -12.58675 -12.47940 -12.32084 -11.96098 -11.72313 -11.54748 -11.37643 -10.98345 -10.95750 -10.89930 -10.81235 -10.65160 -10.09639 -9.68539 -9.61490 -9.19097 -9.05562 -8.96822 -8.64009 -8.08851 -6.35833 -6.10826 -3.79448 1.95562 2.40027 2.51797 2.57273 3.18425 3.29109 3.33510 3.36605 3.43118 3.57364 3.80373 3.97875 4.03211 4.26638 4.31554 4.40664 4.43966 4.60833 4.64439 4.76077 4.79633 4.85468 4.88202 5.01120 5.06417 5.11550 5.23943 5.24464 5.29752 5.36897 5.55798 5.60395 5.67608 5.68175 5.84775 5.97773 6.11580 6.37702 6.64658 6.81823 7.33996 7.35123 7.71308 7.92149 8.00246 8.47218 8.84168 9.34590 10.96797 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009422 B = 0.002911 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.003500 B = 9616.586326 C =11904.214295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.200 4.200 3 C 0.174 3.826 4 O -0.349 6.349 5 C 0.078 3.922 6 H 0.086 0.914 7 C -0.170 4.170 8 C 0.531 3.469 9 O -0.490 6.490 10 N -0.646 5.646 11 C 0.099 3.901 12 C -0.143 4.143 13 C 0.126 3.874 14 H 0.101 0.899 15 C 0.123 3.877 16 N -0.724 5.724 17 C 0.538 3.462 18 O -0.527 6.527 19 C -0.150 4.150 20 S -0.063 6.063 21 C -0.531 4.531 22 H 0.072 0.928 23 C 0.072 3.928 24 N -0.869 5.869 25 Si 0.918 3.082 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.223 0.777 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.400 0.600 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.501 -17.867 20.938 32.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.200 4.200 3 C 0.098 3.902 4 O -0.267 6.267 5 C 0.017 3.983 6 H 0.104 0.896 7 C -0.228 4.228 8 C 0.318 3.682 9 O -0.362 6.362 10 N -0.386 5.386 11 C -0.024 4.024 12 C -0.181 4.181 13 C 0.024 3.976 14 H 0.119 0.881 15 C -0.003 4.003 16 N -0.378 5.378 17 C 0.324 3.676 18 O -0.403 6.403 19 C -0.300 4.300 20 S 0.164 5.836 21 C -0.679 4.679 22 H 0.091 0.909 23 C -0.137 4.137 24 N -0.505 5.505 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.240 0.760 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.234 0.766 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 16.958 -15.645 20.845 31.094 hybrid contribution -1.278 -2.328 -0.828 2.782 sum 15.680 -17.973 20.016 31.138 Atomic orbital electron populations 1.25034 0.95953 1.00146 0.96794 1.22330 0.93749 1.01219 1.02730 1.19145 0.85301 1.01187 0.84552 1.88161 1.18594 1.94287 1.25705 1.21787 0.83127 0.97385 0.96020 0.89590 1.22249 1.01620 0.95122 1.03786 1.20031 0.80888 0.78557 0.88733 1.90837 1.48590 1.47879 1.48853 1.50179 1.03570 1.60893 1.23971 1.23198 0.81672 0.98792 0.98754 1.23562 0.97951 0.99787 0.96808 1.23133 0.88859 0.94447 0.91200 0.88149 1.21383 0.89518 0.94951 0.94409 1.45771 1.32004 1.10251 1.49792 1.20187 0.82309 0.84929 0.80152 1.90670 1.70486 1.19899 1.59199 1.23491 0.98646 1.07337 1.00561 1.85298 1.34105 1.03141 1.61082 1.22931 1.16226 0.95762 1.33004 0.90941 1.24985 0.97502 0.94657 0.96527 1.70041 1.35952 1.02313 1.42183 0.86124 0.80685 0.79067 0.79667 1.19622 1.20610 1.20634 0.75998 0.90770 0.90680 0.90952 0.90876 0.91119 0.89361 0.89829 0.89036 0.88270 0.90471 0.91149 0.76617 0.89557 0.89071 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 19.25 29.55 0.57 -1.14 16 2 C -0.20 -2.34 13.73 -37.12 -0.51 -2.85 16 3 C 0.17 1.63 6.22 34.37 0.21 1.85 16 4 O -0.35 -4.43 9.48 -55.09 -0.52 -4.95 16 5 C 0.08 0.71 2.94 -27.88 -0.08 0.63 16 6 H 0.09 0.54 7.79 -51.93 -0.40 0.14 16 7 C -0.17 -1.04 9.44 37.15 0.35 -0.69 16 8 C 0.53 6.47 7.28 -10.98 -0.08 6.39 16 9 O -0.49 -8.64 15.12 -14.31 -0.22 -8.85 16 10 N -0.65 -5.47 3.48 -171.22 -0.60 -6.07 16 11 C 0.10 0.36 7.04 -2.98 -0.02 0.34 16 12 C -0.14 -0.59 7.86 -25.80 -0.20 -0.79 16 13 C 0.13 1.00 4.27 -66.87 -0.29 0.71 16 14 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 15 C 0.12 1.54 5.33 -4.04 -0.02 1.51 16 16 N -0.72 -11.70 4.28 -60.29 -0.26 -11.96 16 17 C 0.54 11.57 7.85 -10.98 -0.09 11.48 16 18 O -0.53 -13.18 15.86 5.56 0.09 -13.09 16 19 C -0.15 -3.48 6.16 36.01 0.22 -3.26 16 20 S -0.06 -1.85 20.57 -107.50 -2.21 -4.06 16 21 C -0.53 -16.16 9.50 30.94 0.29 -15.87 16 22 H 0.07 2.11 7.80 -52.49 -0.41 1.70 16 23 C 0.07 2.17 5.49 -17.43 -0.10 2.07 16 24 N -0.87 -27.39 13.22 55.49 0.73 -26.66 16 25 Si 0.92 22.55 29.55 -169.99 -5.02 17.53 16 26 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 28 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 29 H 0.22 1.54 7.80 -54.09 -0.42 1.11 16 30 H 0.07 0.46 7.87 -51.93 -0.41 0.05 16 31 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.28 6.51 -51.93 -0.34 -0.06 16 34 H 0.07 0.32 7.87 -51.93 -0.41 -0.09 16 35 H 0.09 0.17 8.12 -51.93 -0.42 -0.25 16 36 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.09 0.19 8.14 -51.92 -0.42 -0.23 16 38 H 0.10 0.44 8.10 -51.93 -0.42 0.02 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 41 H 0.40 5.89 7.96 -40.82 -0.32 5.57 16 42 H 0.09 1.84 8.14 -51.92 -0.42 1.41 16 43 H 0.09 2.11 8.14 -51.92 -0.42 1.69 16 44 H 0.27 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 396.60 15.07 5.98 5.98 Total: -1.00 -42.35 396.60 -8.26 -50.61 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.49 Total: 1.14 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 0.26 Total: 0.39 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: -0.12 Total: -44.69 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.65 Total: -26.90 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Atomic # 16 Polarization: -1.85 SS G_CDS: -2.21 Total: -4.06 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -42.35 -8.26 -50.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738641696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.372 kcal (2) G-P(sol) polarization free energy of solvation -42.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds