Wall clock time and date at job start Sat Apr 11 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42905 * 109.47364 * 84.47880 * 3 2 1 5 5 C 1.42891 * 113.99941 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.47643 * 330.00276 * 5 4 3 7 7 C 1.52995 * 109.47402 * 90.00377 * 5 4 3 8 8 C 1.50705 * 109.47365 * 209.99937 * 5 4 3 9 9 O 1.21287 * 119.99413 * 355.00626 * 8 5 4 10 10 N 1.34774 * 120.00446 * 174.99700 * 8 5 4 11 11 C 1.47577 * 134.49130 * 4.99928 * 10 8 5 12 12 C 1.53946 * 86.11542 * 204.63455 * 11 10 8 13 13 C 1.47577 * 134.49169 * 184.98314 * 10 8 5 14 14 H 1.08999 * 113.87587 * 269.67834 * 13 10 8 15 15 C 1.52995 * 113.76949 * 41.06972 * 13 10 8 16 16 N 1.46510 * 109.46969 * 279.22165 * 15 13 10 17 17 C 1.34772 * 119.99673 * 174.84123 * 16 15 13 18 18 O 1.21281 * 120.00742 * 0.02562 * 17 16 15 19 19 C 1.50707 * 119.99431 * 180.27585 * 17 16 15 20 20 S 1.81004 * 109.46810 * 179.72638 * 19 17 16 21 21 C 1.76204 * 99.99919 * 180.02562 * 20 19 17 22 22 H 1.08001 * 119.99609 * 359.97438 * 21 20 19 23 23 C 1.38790 * 120.00235 * 180.02562 * 21 20 19 24 24 N 1.31634 * 120.00142 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 120.00225 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47058 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.46982 * 119.99876 * 25 23 21 28 28 H 1.48500 * 109.46847 * 239.99458 * 25 23 21 29 29 H 4.38451 * 5.44571 * 180.02562 * 4 1 2 30 30 H 1.09003 * 109.47649 * 324.47930 * 3 2 1 31 31 H 1.09006 * 109.46938 * 204.47724 * 3 2 1 32 32 H 1.09000 * 109.47219 * 59.99643 * 7 5 4 33 33 H 1.09003 * 109.47759 * 179.97438 * 7 5 4 34 34 H 1.09004 * 109.47142 * 300.00021 * 7 5 4 35 35 H 1.08992 * 113.77634 * 90.33028 * 11 10 8 36 36 H 1.09001 * 113.76766 * 318.92871 * 11 10 8 37 37 H 1.09007 * 113.73978 * 222.04344 * 12 11 10 38 38 H 1.08996 * 113.84492 * 90.74829 * 12 11 10 39 39 H 1.09004 * 109.47579 * 159.22373 * 15 13 10 40 40 H 1.08994 * 109.47514 * 39.22383 * 15 13 10 41 41 H 0.96994 * 119.99655 * 354.84139 * 16 15 13 42 42 H 1.09000 * 109.47447 * 299.72563 * 19 17 16 43 43 H 1.08996 * 109.46766 * 59.72969 * 19 17 16 44 44 H 0.97002 * 120.00516 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1224 -0.1288 -1.3410 5 6 4.5469 -0.1384 -1.4533 6 1 4.9789 0.4561 -0.6483 7 6 5.0566 -1.5775 -1.3545 8 6 4.9500 0.4470 -2.7822 9 8 4.1012 0.7506 -3.5937 10 7 6.2537 0.6335 -3.0689 11 6 7.5200 0.3055 -2.3857 12 6 8.1317 1.4699 -3.1858 13 6 6.9881 1.2472 -4.1922 14 1 7.2360 0.5488 -4.9914 15 6 6.3581 2.5433 -4.7061 16 7 5.2440 2.2228 -5.6020 17 6 4.4705 3.2102 -6.0952 18 8 4.6969 4.3640 -5.7978 19 6 3.3207 2.8800 -7.0119 20 16 2.4762 4.4066 -7.4943 21 6 1.2150 3.7440 -8.5311 22 1 1.1539 2.6779 -8.6931 23 6 0.3009 4.5920 -9.1405 24 7 0.3757 5.8914 -8.9435 25 14 -1.0358 3.8896 -10.2404 26 1 -0.9031 2.4117 -10.2984 27 1 -2.3680 4.2463 -9.6898 28 1 -0.8983 4.4527 -11.6076 29 1 -1.0500 0.0002 -0.0001 30 1 3.0098 -0.8356 0.5971 31 1 3.0088 0.9362 0.4258 32 1 4.6246 -2.1721 -2.1595 33 1 6.1432 -1.5850 -1.4406 34 1 4.7650 -2.0011 -0.3934 35 1 7.9235 -0.6710 -2.6531 36 1 7.4958 0.4770 -1.3095 37 1 9.1205 1.2529 -3.5900 38 1 8.0838 2.4302 -2.6725 39 1 7.1063 3.1208 -5.2490 40 1 5.9897 3.1275 -3.8629 41 1 5.0632 1.3001 -5.8402 42 1 3.6985 2.3769 -7.9020 43 1 2.6200 2.2251 -6.4942 44 1 -0.2634 6.4841 -9.3691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738641696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:41 Heat of formation + Delta-G solvation = -48.943005 kcal Electronic energy + Delta-G solvation = -26785.021592 eV Core-core repulsion = 22831.023687 eV Total energy + Delta-G solvation = -3953.997905 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.65771 -40.45512 -39.59661 -38.24708 -35.66099 -34.62536 -34.48619 -32.84895 -31.54703 -30.23617 -28.76833 -28.13156 -27.67075 -25.29541 -24.21295 -22.51511 -21.76213 -20.24916 -19.88189 -19.39318 -18.20633 -18.00609 -17.65379 -17.49544 -17.24423 -16.92176 -16.63173 -16.46770 -16.06197 -15.75249 -15.51691 -15.11559 -14.71327 -14.63780 -14.47598 -14.03910 -13.89597 -13.66642 -13.27868 -13.26083 -13.21019 -13.20219 -13.00542 -12.92253 -12.65820 -12.44579 -12.25311 -12.01547 -11.75039 -11.73059 -11.61101 -11.18976 -10.97520 -10.83796 -10.39286 -10.34671 -10.10279 -9.70999 -8.71378 -8.38251 -6.17201 1.21490 1.25353 1.38538 1.42238 1.54767 1.59594 1.60331 1.75471 1.80726 2.23473 2.32573 2.93114 2.95086 3.27030 3.33605 3.51709 3.62238 3.74465 3.87060 3.96533 4.00205 4.07973 4.17065 4.21023 4.21735 4.34755 4.40697 4.43243 4.49500 4.66707 4.71146 4.73519 4.77941 4.95606 5.00671 5.06067 5.17692 5.34743 5.37397 5.44147 6.00755 6.16316 6.44404 6.53941 6.68358 7.02115 7.16183 7.22492 8.71715 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009422 B = 0.002911 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.003500 B = 9616.586326 C =11904.214295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.239 4.239 3 C 0.168 3.832 4 O -0.393 6.393 5 C 0.076 3.924 6 H 0.116 0.884 7 C -0.160 4.160 8 C 0.517 3.483 9 O -0.565 6.565 10 N -0.646 5.646 11 C 0.102 3.898 12 C -0.126 4.126 13 C 0.119 3.881 14 H 0.121 0.879 15 C 0.118 3.882 16 N -0.700 5.700 17 C 0.536 3.464 18 O -0.570 6.570 19 C -0.127 4.127 20 S -0.144 6.144 21 C -0.550 4.550 22 H 0.077 0.923 23 C 0.014 3.986 24 N -0.910 5.910 25 Si 1.003 2.997 26 H -0.260 1.260 27 H -0.271 1.271 28 H -0.268 1.268 29 H 0.249 0.751 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.108 0.892 37 H 0.124 0.876 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.043 0.957 41 H 0.408 0.592 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.526 -20.647 21.942 35.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.239 4.239 3 C 0.093 3.907 4 O -0.313 6.313 5 C 0.015 3.985 6 H 0.134 0.866 7 C -0.218 4.218 8 C 0.306 3.694 9 O -0.442 6.442 10 N -0.385 5.385 11 C -0.018 4.018 12 C -0.164 4.164 13 C 0.016 3.984 14 H 0.138 0.862 15 C -0.006 4.006 16 N -0.352 5.352 17 C 0.321 3.679 18 O -0.450 6.450 19 C -0.278 4.278 20 S 0.083 5.917 21 C -0.698 4.698 22 H 0.095 0.905 23 C -0.191 4.191 24 N -0.546 5.546 25 Si 0.824 3.176 26 H -0.184 1.184 27 H -0.197 1.197 28 H -0.193 1.193 29 H 0.265 0.735 30 H 0.126 0.874 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.108 0.892 35 H 0.136 0.864 36 H 0.126 0.874 37 H 0.142 0.858 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.062 0.938 41 H 0.244 0.756 42 H 0.126 0.874 43 H 0.108 0.892 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 19.084 -18.482 21.899 34.429 hybrid contribution -1.778 -1.489 -1.055 2.548 sum 17.306 -19.970 20.844 33.657 Atomic orbital electron populations 1.25888 0.97065 0.99670 0.96053 1.23258 0.95314 1.01875 1.03487 1.19449 0.84219 1.03204 0.83845 1.88100 1.20886 1.94638 1.27651 1.22038 0.81841 0.99526 0.95066 0.86618 1.22223 1.03096 0.92532 1.03917 1.20776 0.81504 0.77753 0.89338 1.90787 1.50915 1.51384 1.51125 1.50399 1.03826 1.59536 1.24714 1.23607 0.78180 0.99971 1.00034 1.23545 0.97848 1.00000 0.95022 1.23398 0.89992 0.92430 0.92608 0.86153 1.21661 0.88218 0.97881 0.92851 1.45620 1.31537 1.09453 1.48618 1.19916 0.82503 0.85224 0.80223 1.90646 1.71743 1.21646 1.60927 1.23321 0.98909 1.03701 1.01877 1.85403 1.35784 1.08593 1.61932 1.23224 1.16831 0.96145 1.33574 0.90459 1.26169 1.00091 0.94926 0.97920 1.70190 1.37179 1.04002 1.43267 0.84862 0.76726 0.78679 0.77374 1.18420 1.19657 1.19261 0.73473 0.87433 0.89444 0.93302 0.87987 0.89176 0.86395 0.87413 0.85784 0.88719 0.89527 0.93823 0.75599 0.87434 0.89218 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.64 19.25 74.32 1.43 -2.21 16 2 C -0.24 -5.69 13.73 31.12 0.43 -5.27 16 3 C 0.17 3.06 6.22 70.18 0.44 3.50 16 4 O -0.39 -10.08 9.48 -129.99 -1.23 -11.31 16 5 C 0.08 1.28 2.94 29.85 0.09 1.37 16 6 H 0.12 1.16 7.79 -2.38 -0.02 1.14 16 7 C -0.16 -1.52 9.44 71.98 0.68 -0.84 16 8 C 0.52 12.41 7.28 87.66 0.64 13.05 16 9 O -0.56 -20.81 15.12 15.94 0.24 -20.57 16 10 N -0.65 -9.52 3.48 -814.01 -2.83 -12.35 16 11 C 0.10 0.26 7.04 86.48 0.61 0.87 16 12 C -0.13 -0.52 7.86 31.26 0.25 -0.28 16 13 C 0.12 1.60 4.27 45.09 0.19 1.79 16 14 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 15 C 0.12 2.94 5.33 86.38 0.46 3.40 16 16 N -0.70 -23.07 4.28 -463.05 -1.98 -25.05 16 17 C 0.54 23.96 7.85 87.66 0.69 24.65 16 18 O -0.57 -29.96 15.86 -3.03 -0.05 -30.01 16 19 C -0.13 -6.12 6.16 71.24 0.44 -5.68 16 20 S -0.14 -8.87 20.57 -56.49 -1.16 -10.03 16 21 C -0.55 -34.28 9.50 67.95 0.65 -33.64 16 22 H 0.08 4.57 7.80 -2.91 -0.02 4.55 16 23 C 0.01 0.83 5.49 84.85 0.47 1.29 16 24 N -0.91 -58.69 13.22 21.65 0.29 -58.41 16 25 Si 1.00 46.49 29.55 68.60 2.03 48.52 16 26 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 27 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 28 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 29 H 0.25 3.34 7.80 -4.42 -0.03 3.30 16 30 H 0.11 1.13 7.87 -2.39 -0.02 1.11 16 31 H 0.09 1.29 8.08 -2.38 -0.02 1.27 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.10 0.33 6.51 -2.39 -0.02 0.31 16 34 H 0.09 0.52 7.87 -2.38 -0.02 0.50 16 35 H 0.12 -0.27 8.12 -2.39 -0.02 -0.29 16 36 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 37 H 0.12 -0.17 8.14 -2.38 -0.02 -0.19 16 38 H 0.09 0.55 8.10 -2.39 -0.02 0.53 16 39 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.04 1.34 8.13 -2.39 -0.02 1.32 16 41 H 0.41 12.14 7.96 -92.71 -0.74 11.41 16 42 H 0.11 4.65 8.14 -2.40 -0.02 4.63 16 43 H 0.09 4.32 8.14 -2.40 -0.02 4.30 16 44 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -100.51 396.60 3.01 -97.50 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.27 Total: 19.70 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 7.45 Total: 2.01 kcal Atomic # 7 Polarization: -91.28 SS G_CDS: -4.53 Total: -95.81 kcal Atomic # 8 Polarization: -60.85 SS G_CDS: -1.04 Total: -61.89 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.16 Total: -10.03 kcal Total: -100.51 3.01 -97.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738641696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.555 kcal (2) G-P(sol) polarization free energy of solvation -100.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds