Wall clock time and date at job start Sat Apr 11 2020 05:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 O 1.42904 * 109.46943 * 273.40959 * 3 2 1 5 5 C 1.42905 * 113.99955 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.46816 * 329.99526 * 5 4 3 7 7 C 1.52995 * 109.47357 * 89.99737 * 5 4 3 8 8 C 1.50703 * 109.46925 * 209.99899 * 5 4 3 9 9 O 1.21285 * 119.99666 * 354.99646 * 8 5 4 10 10 N 1.34773 * 119.99890 * 174.72195 * 8 5 4 11 11 C 1.47065 * 136.05889 * 355.18312 * 10 8 5 12 12 C 1.53502 * 87.98493 * 152.84412 * 11 10 8 13 13 C 1.47068 * 136.05664 * 174.81898 * 10 8 5 14 14 H 1.08992 * 113.46938 * 92.37235 * 13 10 8 15 15 C 1.53002 * 113.46502 * 321.93385 * 13 10 8 16 16 N 1.46501 * 109.46971 * 176.28438 * 15 13 10 17 17 C 1.34776 * 119.99988 * 184.96626 * 16 15 13 18 18 O 1.21279 * 120.00086 * 359.97438 * 17 16 15 19 19 C 1.50706 * 120.00054 * 179.97438 * 17 16 15 20 20 S 1.81000 * 109.46973 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99533 * 180.02562 * 20 19 17 22 22 H 1.07988 * 120.00368 * 0.02562 * 21 20 19 23 23 C 1.38810 * 119.99552 * 180.02562 * 21 20 19 24 24 N 1.31627 * 119.99752 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99734 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46995 * 90.00018 * 25 23 21 27 27 H 1.48496 * 109.47189 * 209.99876 * 25 23 21 28 28 H 1.48498 * 109.47268 * 330.00528 * 25 23 21 29 29 H 4.38444 * 5.44470 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.47505 * 153.40837 * 3 2 1 31 31 H 1.08997 * 109.47333 * 33.40671 * 3 2 1 32 32 H 1.09000 * 109.47330 * 60.00104 * 7 5 4 33 33 H 1.08996 * 109.46803 * 180.02562 * 7 5 4 34 34 H 1.09001 * 109.47019 * 299.99494 * 7 5 4 35 35 H 1.08994 * 113.47063 * 267.62703 * 11 10 8 36 36 H 1.09003 * 113.46896 * 38.06726 * 11 10 8 37 37 H 1.08999 * 114.20304 * 139.65528 * 12 11 10 38 38 H 1.08997 * 114.20753 * 272.48259 * 12 11 10 39 39 H 1.09005 * 109.47233 * 296.28069 * 15 13 10 40 40 H 1.08995 * 109.47178 * 56.28244 * 15 13 10 41 41 H 0.96996 * 120.00278 * 4.96669 * 16 15 13 42 42 H 1.09000 * 109.47139 * 300.00595 * 19 17 16 43 43 H 1.08997 * 109.46759 * 60.00477 * 19 17 16 44 44 H 0.97003 * 119.99194 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1223 -0.0793 1.3449 5 6 4.5469 -0.0848 1.4576 6 1 4.9798 -0.5462 0.5701 7 6 5.0541 1.3532 1.5838 8 6 4.9511 -0.8690 2.6794 9 8 4.1028 -1.2964 3.4336 10 7 6.2548 -1.1003 2.9308 11 6 7.5280 -0.8442 2.2408 12 6 8.2063 -0.8167 3.6175 13 6 7.0308 -1.7139 4.0191 14 1 7.2241 -2.7760 3.8689 15 6 6.4780 -1.4035 5.4116 16 7 7.2589 -2.1258 6.4190 17 6 6.8903 -2.0837 7.7147 18 8 5.9126 -1.4476 8.0468 19 6 7.6932 -2.8271 8.7510 20 16 6.9505 -2.5778 10.3827 21 6 8.0577 -3.5275 11.3711 22 1 8.8905 -4.0378 10.9105 23 6 7.8594 -3.6196 12.7418 24 7 6.8440 -2.9980 13.3031 25 14 9.0328 -4.6270 13.7896 26 1 10.1444 -3.7616 14.2591 27 1 8.3037 -5.1755 14.9612 28 1 9.5831 -5.7446 12.9813 29 1 -1.0500 -0.0002 0.0000 30 1 3.0090 0.9198 -0.4600 31 1 3.0097 -0.8570 -0.5658 32 1 4.6212 1.8146 2.4714 33 1 6.1407 1.3489 1.6693 34 1 4.7618 1.9204 0.7001 35 1 7.8552 -1.6723 1.6121 36 1 7.5563 0.1150 1.7237 37 1 9.1780 -1.3098 3.6469 38 1 8.2023 0.1615 4.0983 39 1 6.5460 -0.3318 5.5989 40 1 5.4355 -1.7166 5.4668 41 1 8.0411 -2.6342 6.1536 42 1 7.6978 -3.8908 8.5129 43 1 8.7164 -2.4516 8.7560 44 1 6.7057 -3.0621 14.2611 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738641699.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:45 Heat of formation + Delta-G solvation = -46.524480 kcal Electronic energy + Delta-G solvation = -25920.680446 eV Core-core repulsion = 21966.787416 eV Total energy + Delta-G solvation = -3953.893030 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.82429 -40.57978 -39.72320 -38.39854 -35.80737 -34.58437 -34.49782 -32.87755 -31.56991 -30.33419 -28.80074 -28.12889 -27.62957 -25.28999 -24.17181 -22.75747 -21.94897 -20.21436 -19.85782 -19.43844 -18.24499 -18.03731 -17.89059 -17.60590 -16.88036 -16.84597 -16.65509 -16.58916 -16.13617 -15.74241 -15.46136 -15.22928 -14.90662 -14.69987 -14.47537 -14.04154 -13.96290 -13.67539 -13.60018 -13.49110 -13.22090 -13.16793 -12.92287 -12.86623 -12.63974 -12.59982 -12.21097 -11.77107 -11.75242 -11.63656 -11.56691 -11.13998 -11.05353 -10.89808 -10.50025 -10.27243 -10.20814 -9.82563 -8.68407 -8.34294 -6.13473 1.14818 1.28098 1.43466 1.45307 1.48563 1.56453 1.57122 1.74604 1.76950 2.27190 2.31916 2.93871 2.99926 3.25751 3.32003 3.43679 3.59614 3.70422 3.85521 3.96072 3.96701 4.00656 4.04216 4.19735 4.30237 4.40224 4.43240 4.49467 4.50839 4.55328 4.67902 4.74666 4.81135 4.90977 4.97668 5.04377 5.20952 5.27013 5.36599 5.42020 5.99200 6.20115 6.46523 6.55148 6.63354 7.05228 7.06538 7.21864 8.75131 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020930 B = 0.001792 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.500539 B =15622.778745 C =16600.517895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.239 4.239 3 C 0.166 3.834 4 O -0.395 6.395 5 C 0.082 3.918 6 H 0.130 0.870 7 C -0.166 4.166 8 C 0.527 3.473 9 O -0.581 6.581 10 N -0.645 5.645 11 C 0.101 3.899 12 C -0.136 4.136 13 C 0.118 3.882 14 H 0.121 0.879 15 C 0.120 3.880 16 N -0.703 5.703 17 C 0.530 3.470 18 O -0.572 6.572 19 C -0.124 4.124 20 S -0.162 6.162 21 C -0.544 4.544 22 H 0.087 0.913 23 C 0.010 3.990 24 N -0.913 5.913 25 Si 1.002 2.998 26 H -0.266 1.266 27 H -0.280 1.280 28 H -0.256 1.256 29 H 0.250 0.750 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.042 0.958 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.109 0.891 37 H 0.131 0.869 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.034 0.966 41 H 0.422 0.578 42 H 0.112 0.888 43 H 0.119 0.881 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.539 5.844 -36.820 37.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.239 4.239 3 C 0.091 3.909 4 O -0.314 6.314 5 C 0.022 3.978 6 H 0.147 0.853 7 C -0.223 4.223 8 C 0.317 3.683 9 O -0.460 6.460 10 N -0.383 5.383 11 C -0.019 4.019 12 C -0.173 4.173 13 C 0.015 3.985 14 H 0.138 0.862 15 C -0.005 4.005 16 N -0.358 5.358 17 C 0.316 3.684 18 O -0.450 6.450 19 C -0.275 4.275 20 S 0.065 5.935 21 C -0.692 4.692 22 H 0.105 0.895 23 C -0.194 4.194 24 N -0.550 5.550 25 Si 0.824 3.176 26 H -0.191 1.191 27 H -0.205 1.205 28 H -0.180 1.180 29 H 0.266 0.734 30 H 0.124 0.876 31 H 0.113 0.887 32 H 0.061 0.939 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.138 0.862 36 H 0.127 0.873 37 H 0.149 0.851 38 H 0.112 0.888 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.260 0.740 42 H 0.131 0.869 43 H 0.137 0.863 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.022 6.754 -35.674 36.530 hybrid contribution 0.935 -1.411 0.670 1.820 sum 4.956 5.343 -35.004 35.755 Atomic orbital electron populations 1.25887 0.97033 0.99705 0.95973 1.23244 0.95277 1.01872 1.03532 1.19494 0.84287 1.03760 0.83356 1.88103 1.20648 1.95128 1.27550 1.21986 0.82046 0.97517 0.96278 0.85297 1.22277 1.03186 0.93061 1.03800 1.20810 0.80524 0.79698 0.87296 1.90774 1.51047 1.53095 1.51069 1.49828 1.04471 1.59784 1.24200 1.23450 0.77241 1.04791 0.96379 1.23564 0.97643 1.00420 0.95681 1.23109 0.89792 1.00891 0.84734 0.86187 1.21384 0.95019 0.96176 0.87896 1.45435 1.32149 1.53220 1.05017 1.20250 0.84124 0.80208 0.83794 1.90718 1.29122 1.43861 1.81316 1.23337 1.03400 1.04086 0.96679 1.85740 1.41412 1.68200 0.98106 1.23212 1.14938 1.35878 0.95165 0.89521 1.26195 0.97760 0.96908 0.98534 1.70207 1.30167 1.42539 1.12077 0.84900 0.77429 0.78200 0.77103 1.19129 1.20515 1.17989 0.73399 0.87644 0.88659 0.93891 0.88093 0.88591 0.86156 0.87275 0.85091 0.88798 0.92593 0.94783 0.73957 0.86934 0.86301 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 19.25 74.32 1.43 -1.38 16 2 C -0.24 -4.62 13.73 31.12 0.43 -4.20 16 3 C 0.17 2.36 6.22 70.17 0.44 2.79 16 4 O -0.39 -8.97 9.48 -129.99 -1.23 -10.20 16 5 C 0.08 1.24 2.97 29.85 0.09 1.33 16 6 H 0.13 0.78 7.79 -2.39 -0.02 0.77 16 7 C -0.17 -1.64 9.46 71.98 0.68 -0.96 16 8 C 0.53 12.60 7.29 87.66 0.64 13.24 16 9 O -0.58 -22.17 16.13 15.94 0.26 -21.91 16 10 N -0.65 -9.89 3.53 -834.22 -2.95 -12.84 16 11 C 0.10 0.27 8.14 83.18 0.68 0.94 16 12 C -0.14 -0.66 8.00 30.84 0.25 -0.42 16 13 C 0.12 1.73 4.06 41.70 0.17 1.90 16 14 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 15 C 0.12 3.25 5.46 86.38 0.47 3.72 16 16 N -0.70 -18.46 5.55 -463.05 -2.57 -21.03 16 17 C 0.53 20.86 7.85 87.66 0.69 21.55 16 18 O -0.57 -29.39 15.86 -3.03 -0.05 -29.44 16 19 C -0.12 -4.97 6.16 71.24 0.44 -4.53 16 20 S -0.16 -9.26 20.57 -56.49 -1.16 -10.43 16 21 C -0.54 -31.41 9.50 67.96 0.65 -30.76 16 22 H 0.09 4.57 7.80 -2.92 -0.02 4.55 16 23 C 0.01 0.60 5.49 84.86 0.47 1.07 16 24 N -0.91 -57.30 13.22 21.65 0.29 -57.01 16 25 Si 1.00 43.92 29.55 68.60 2.03 45.95 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 28 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 29 H 0.25 2.12 7.80 -4.42 -0.03 2.09 16 30 H 0.11 0.78 7.87 -2.39 -0.02 0.76 16 31 H 0.10 0.88 8.09 -2.39 -0.02 0.86 16 32 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.10 0.43 6.01 -2.39 -0.01 0.42 16 34 H 0.10 0.49 7.87 -2.39 -0.02 0.47 16 35 H 0.12 -0.28 8.14 -2.39 -0.02 -0.30 16 36 H 0.11 -0.21 6.33 -2.39 -0.02 -0.22 16 37 H 0.13 -0.14 8.14 -2.39 -0.02 -0.16 16 38 H 0.09 0.68 7.94 -2.39 -0.02 0.66 16 39 H 0.06 1.65 7.89 -2.38 -0.02 1.63 16 40 H 0.03 1.29 7.17 -2.39 -0.02 1.27 16 41 H 0.42 6.85 8.48 -92.71 -0.79 6.06 16 42 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 43 H 0.12 4.10 8.14 -2.40 -0.02 4.08 16 44 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -102.53 396.99 2.34 -100.18 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.23 Total: 12.44 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 7.51 Total: 4.29 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -5.23 Total: -90.88 kcal Atomic # 8 Polarization: -60.53 SS G_CDS: -1.02 Total: -61.56 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -9.26 SS G_CDS: -1.16 Total: -10.43 kcal Total: -102.53 2.34 -100.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738641699.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.660 kcal (2) G-P(sol) polarization free energy of solvation -102.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds