Wall clock time and date at job start Sat Apr 11 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 O 1.42893 * 109.47509 * 190.60300 * 3 2 1 5 5 C 1.42899 * 114.00370 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.46981 * 29.99986 * 5 4 3 7 7 C 1.53004 * 109.46955 * 270.00169 * 5 4 3 8 8 C 1.50695 * 109.47197 * 150.00177 * 5 4 3 9 9 O 1.21283 * 120.00360 * 4.99551 * 8 5 4 10 10 N 1.34783 * 119.99811 * 185.00270 * 8 5 4 11 11 C 1.47068 * 136.05900 * 355.16976 * 10 8 5 12 12 C 1.53496 * 87.98608 * 207.08805 * 11 10 8 13 13 C 1.47067 * 136.05728 * 174.80934 * 10 8 5 14 14 H 1.09004 * 113.46480 * 267.69004 * 13 10 8 15 15 C 1.53004 * 113.46809 * 38.12521 * 13 10 8 16 16 N 1.46496 * 109.47007 * 184.35673 * 15 13 10 17 17 C 1.34775 * 120.00262 * 184.98393 * 16 15 13 18 18 O 1.21283 * 119.99565 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00439 * 179.97438 * 17 16 15 20 20 S 1.81005 * 109.47115 * 180.02562 * 19 17 16 21 21 C 1.76200 * 99.99649 * 180.02562 * 20 19 17 22 22 H 1.08001 * 120.00306 * 0.02562 * 21 20 19 23 23 C 1.38801 * 119.99783 * 180.02562 * 21 20 19 24 24 N 1.31636 * 119.99968 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99949 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.46947 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.47016 * 120.00310 * 25 23 21 28 28 H 1.48500 * 109.46812 * 240.00234 * 25 23 21 29 29 H 4.38443 * 5.44563 * 180.02562 * 4 1 2 30 30 H 1.09006 * 109.47117 * 310.60483 * 3 2 1 31 31 H 1.09005 * 109.47164 * 70.60045 * 3 2 1 32 32 H 1.09002 * 109.47126 * 299.99727 * 7 5 4 33 33 H 1.08996 * 109.47738 * 59.99688 * 7 5 4 34 34 H 1.09000 * 109.46852 * 179.97438 * 7 5 4 35 35 H 1.08996 * 113.46614 * 321.87542 * 11 10 8 36 36 H 1.09003 * 113.46450 * 92.30924 * 11 10 8 37 37 H 1.09000 * 114.20072 * 87.52056 * 12 11 10 38 38 H 1.08997 * 114.20839 * 220.14792 * 12 11 10 39 39 H 1.08995 * 109.47257 * 304.35641 * 15 13 10 40 40 H 1.08997 * 109.46793 * 64.35917 * 15 13 10 41 41 H 0.97003 * 120.00417 * 4.98415 * 16 15 13 42 42 H 1.08990 * 109.47365 * 300.00452 * 19 17 16 43 43 H 1.09003 * 109.46456 * 60.00731 * 19 17 16 44 44 H 0.96999 * 119.99960 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.3250 0.2479 5 6 4.5463 1.4367 0.2681 6 1 4.9788 0.6877 -0.3953 7 6 5.0553 1.2108 1.6931 8 6 4.9490 2.8123 -0.1971 9 8 4.1000 3.6472 -0.4280 10 7 6.2526 3.1149 -0.3568 11 6 7.5348 2.4390 -0.1077 12 6 8.1725 3.8258 0.0545 13 6 7.0188 4.2637 -0.8627 14 1 7.2573 4.1929 -1.9240 15 6 6.4133 5.6159 -0.4805 16 7 7.1818 6.6912 -1.1125 17 6 6.8923 7.9783 -0.8367 18 8 5.9959 8.2462 -0.0650 19 6 7.6832 9.0844 -1.4863 20 16 7.0599 10.6859 -0.9178 21 6 8.1313 11.7647 -1.8084 22 1 8.8866 11.3560 -2.4632 23 6 8.0044 13.1397 -1.6683 24 7 7.0841 13.6378 -0.8697 25 14 9.1397 14.2835 -2.6129 26 1 10.0791 13.4799 -3.4357 27 1 8.3331 15.1611 -3.4985 28 1 9.9090 15.1187 -1.6559 29 1 -1.0502 -0.0003 0.0001 30 1 3.0096 -0.6681 0.7803 31 1 3.0095 -0.3405 -0.9694 32 1 4.6228 1.9599 2.3565 33 1 4.7641 0.2159 2.0297 34 1 6.1419 1.2956 1.7084 35 1 7.5431 1.8476 0.8079 36 1 7.9093 1.8872 -0.9699 37 1 8.1196 4.2263 1.0668 38 1 9.1614 3.9183 -0.3943 39 1 5.3789 5.6600 -0.8211 40 1 6.4447 5.7349 0.6024 41 1 7.8990 6.4769 -1.7294 42 1 8.7344 8.9870 -1.2152 43 1 7.5794 9.0174 -2.5693 44 1 6.9957 14.5988 -0.7715 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738641703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:48 Heat of formation + Delta-G solvation = -13.168512 kcal Electronic energy + Delta-G solvation = -25900.253287 eV Core-core repulsion = 21947.806681 eV Total energy + Delta-G solvation = -3952.446606 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.11168 -39.33692 -38.77367 -37.55732 -34.46430 -33.87543 -32.40286 -32.20410 -30.15929 -29.69156 -27.68798 -27.57343 -25.45739 -24.70163 -23.39118 -22.20746 -20.50143 -19.47113 -18.90051 -17.84858 -17.54344 -17.37453 -16.62306 -16.41177 -16.12006 -15.77650 -15.27318 -15.11904 -14.78658 -14.73044 -14.61072 -13.96037 -13.85756 -13.45850 -13.37898 -13.09820 -13.08214 -12.86735 -12.73707 -12.52745 -12.34328 -12.06238 -11.76405 -11.65129 -11.11446 -11.05619 -11.02179 -10.99331 -10.94187 -10.73016 -10.25033 -9.79899 -9.77950 -9.36956 -9.13557 -9.05350 -8.82823 -8.19187 -6.46808 -6.19096 -3.89449 1.80328 2.26495 2.36572 2.39701 3.09773 3.15604 3.23272 3.30273 3.34948 3.45685 3.78247 3.79521 3.91667 4.12031 4.22581 4.32665 4.38108 4.50342 4.55089 4.63337 4.72615 4.75183 4.83255 4.86542 5.06287 5.15144 5.15941 5.21140 5.28359 5.32159 5.48796 5.57296 5.62007 5.68203 5.78593 5.93120 6.06794 6.16314 6.50253 6.61889 7.16239 7.28458 7.62110 7.72392 7.83515 8.37816 8.66591 9.26081 10.88380 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021520 B = 0.001772 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.811836 B =15793.361246 C =16704.001878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.198 4.198 3 C 0.172 3.828 4 O -0.351 6.351 5 C 0.080 3.920 6 H 0.089 0.911 7 C -0.175 4.175 8 C 0.541 3.459 9 O -0.502 6.502 10 N -0.643 5.643 11 C 0.094 3.906 12 C -0.150 4.150 13 C 0.127 3.873 14 H 0.101 0.899 15 C 0.115 3.885 16 N -0.737 5.737 17 C 0.531 3.469 18 O -0.513 6.513 19 C -0.152 4.152 20 S -0.061 6.061 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.223 0.777 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.397 0.603 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.663 -34.494 1.154 34.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.198 4.198 3 C 0.097 3.903 4 O -0.269 6.269 5 C 0.019 3.981 6 H 0.106 0.894 7 C -0.232 4.232 8 C 0.328 3.672 9 O -0.374 6.374 10 N -0.383 5.383 11 C -0.028 4.028 12 C -0.188 4.188 13 C 0.024 3.976 14 H 0.119 0.881 15 C -0.009 4.009 16 N -0.392 5.392 17 C 0.317 3.683 18 O -0.387 6.387 19 C -0.302 4.302 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.746 3.254 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.240 0.760 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.230 0.770 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.805 -33.338 2.471 33.439 hybrid contribution 2.037 -0.016 -1.918 2.798 sum 1.231 -33.354 0.553 33.381 Atomic orbital electron populations 1.25026 0.95937 0.97049 1.00205 1.22359 0.93759 1.02546 1.01138 1.19161 0.85240 0.85044 1.00880 1.88148 1.18734 1.27435 1.92592 1.21799 0.82978 0.95025 0.98340 0.89365 1.22321 1.01986 1.03622 0.95275 1.19923 0.80154 0.89235 0.77843 1.90812 1.48569 1.49173 1.48830 1.49614 1.03696 1.19838 1.65116 1.23124 0.81076 0.96778 1.01862 1.23628 0.98136 0.95399 1.01591 1.22944 0.88461 0.87055 0.99184 0.88131 1.21440 0.96730 0.83972 0.98792 1.45840 1.38525 1.05530 1.49331 1.20306 0.83854 0.82662 0.81460 1.90727 1.30477 1.82882 1.34611 1.23517 1.02706 1.00431 1.03582 1.85464 1.47130 0.90546 1.60259 1.22913 1.20937 0.93202 1.31272 0.90867 1.25002 0.95882 0.97308 0.95454 1.70035 1.31838 1.13047 1.35332 0.86111 0.79962 0.80039 0.79336 1.19634 1.20590 1.20584 0.76010 0.90556 0.90671 0.90684 0.91016 0.90539 0.89788 0.89309 0.88036 0.88579 0.90103 0.90853 0.76959 0.89180 0.89212 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 19.25 29.55 0.57 -0.78 16 2 C -0.20 -1.87 13.73 -37.12 -0.51 -2.38 16 3 C 0.17 1.28 6.22 34.37 0.21 1.50 16 4 O -0.35 -3.86 9.48 -55.09 -0.52 -4.38 16 5 C 0.08 0.64 2.99 -27.88 -0.08 0.56 16 6 H 0.09 0.42 7.79 -51.93 -0.40 0.01 16 7 C -0.17 -0.99 9.44 37.16 0.35 -0.64 16 8 C 0.54 6.29 7.36 -10.99 -0.08 6.20 16 9 O -0.50 -8.65 15.88 -14.31 -0.23 -8.88 16 10 N -0.64 -5.45 3.55 -177.29 -0.63 -6.08 16 11 C 0.09 0.36 8.06 -8.51 -0.07 0.29 16 12 C -0.15 -0.74 8.03 -26.09 -0.21 -0.95 16 13 C 0.13 1.05 4.09 -72.26 -0.30 0.75 16 14 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 15 C 0.12 1.53 5.40 -4.04 -0.02 1.51 16 16 N -0.74 -10.03 5.55 -60.30 -0.33 -10.37 16 17 C 0.53 10.31 7.85 -10.99 -0.09 10.22 16 18 O -0.51 -12.44 15.86 5.56 0.09 -12.35 16 19 C -0.15 -3.10 6.16 36.01 0.22 -2.87 16 20 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 21 C -0.53 -15.40 9.50 30.94 0.29 -15.10 16 22 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.51 13.22 55.49 0.73 -25.77 16 25 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H 0.22 0.99 7.80 -54.08 -0.42 0.56 16 30 H 0.08 0.36 7.87 -51.93 -0.41 -0.05 16 31 H 0.08 0.40 8.08 -51.93 -0.42 -0.02 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.28 7.87 -51.93 -0.41 -0.13 16 34 H 0.08 0.28 5.53 -51.93 -0.29 0.00 16 35 H 0.08 0.19 5.95 -51.93 -0.31 -0.12 16 36 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 37 H 0.10 0.60 7.97 -51.93 -0.41 0.19 16 38 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.08 1.38 7.04 -51.93 -0.37 1.01 16 40 H 0.07 1.08 7.90 -51.93 -0.41 0.67 16 41 H 0.40 3.85 8.48 -40.82 -0.35 3.50 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 43 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 44 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 395.79 15.07 5.96 5.96 Total: -1.00 -41.59 395.79 -8.24 -49.83 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -6.28 Total: -0.92 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 0.20 Total: 0.31 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: -0.23 Total: -42.22 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.66 Total: -25.61 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -41.59 -8.24 -49.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738641703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.661 kcal (2) G-P(sol) polarization free energy of solvation -41.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds