Wall clock time and date at job start Sat Apr 11 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 O 1.42893 * 109.47509 * 190.60300 * 3 2 1 5 5 C 1.42899 * 114.00370 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.46981 * 29.99986 * 5 4 3 7 7 C 1.53004 * 109.46955 * 270.00169 * 5 4 3 8 8 C 1.50695 * 109.47197 * 150.00177 * 5 4 3 9 9 O 1.21283 * 120.00360 * 4.99551 * 8 5 4 10 10 N 1.34783 * 119.99811 * 185.00270 * 8 5 4 11 11 C 1.47068 * 136.05900 * 355.16976 * 10 8 5 12 12 C 1.53496 * 87.98608 * 207.08805 * 11 10 8 13 13 C 1.47067 * 136.05728 * 174.80934 * 10 8 5 14 14 H 1.09004 * 113.46480 * 267.69004 * 13 10 8 15 15 C 1.53004 * 113.46809 * 38.12521 * 13 10 8 16 16 N 1.46496 * 109.47007 * 184.35673 * 15 13 10 17 17 C 1.34775 * 120.00262 * 184.98393 * 16 15 13 18 18 O 1.21283 * 119.99565 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00439 * 179.97438 * 17 16 15 20 20 S 1.81005 * 109.47115 * 180.02562 * 19 17 16 21 21 C 1.76200 * 99.99649 * 180.02562 * 20 19 17 22 22 H 1.08001 * 120.00306 * 0.02562 * 21 20 19 23 23 C 1.38801 * 119.99783 * 180.02562 * 21 20 19 24 24 N 1.31636 * 119.99968 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99949 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.46947 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.47016 * 120.00310 * 25 23 21 28 28 H 1.48500 * 109.46812 * 240.00234 * 25 23 21 29 29 H 4.38443 * 5.44563 * 180.02562 * 4 1 2 30 30 H 1.09006 * 109.47117 * 310.60483 * 3 2 1 31 31 H 1.09005 * 109.47164 * 70.60045 * 3 2 1 32 32 H 1.09002 * 109.47126 * 299.99727 * 7 5 4 33 33 H 1.08996 * 109.47738 * 59.99688 * 7 5 4 34 34 H 1.09000 * 109.46852 * 179.97438 * 7 5 4 35 35 H 1.08996 * 113.46614 * 321.87542 * 11 10 8 36 36 H 1.09003 * 113.46450 * 92.30924 * 11 10 8 37 37 H 1.09000 * 114.20072 * 87.52056 * 12 11 10 38 38 H 1.08997 * 114.20839 * 220.14792 * 12 11 10 39 39 H 1.08995 * 109.47257 * 304.35641 * 15 13 10 40 40 H 1.08997 * 109.46793 * 64.35917 * 15 13 10 41 41 H 0.97003 * 120.00417 * 4.98415 * 16 15 13 42 42 H 1.08990 * 109.47365 * 300.00452 * 19 17 16 43 43 H 1.09003 * 109.46456 * 60.00731 * 19 17 16 44 44 H 0.96999 * 119.99960 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.3250 0.2479 5 6 4.5463 1.4367 0.2681 6 1 4.9788 0.6877 -0.3953 7 6 5.0553 1.2108 1.6931 8 6 4.9490 2.8123 -0.1971 9 8 4.1000 3.6472 -0.4280 10 7 6.2526 3.1149 -0.3568 11 6 7.5348 2.4390 -0.1077 12 6 8.1725 3.8258 0.0545 13 6 7.0188 4.2637 -0.8627 14 1 7.2573 4.1929 -1.9240 15 6 6.4133 5.6159 -0.4805 16 7 7.1818 6.6912 -1.1125 17 6 6.8923 7.9783 -0.8367 18 8 5.9959 8.2462 -0.0650 19 6 7.6832 9.0844 -1.4863 20 16 7.0599 10.6859 -0.9178 21 6 8.1313 11.7647 -1.8084 22 1 8.8866 11.3560 -2.4632 23 6 8.0044 13.1397 -1.6683 24 7 7.0841 13.6378 -0.8697 25 14 9.1397 14.2835 -2.6129 26 1 10.0791 13.4799 -3.4357 27 1 8.3331 15.1611 -3.4985 28 1 9.9090 15.1187 -1.6559 29 1 -1.0502 -0.0003 0.0001 30 1 3.0096 -0.6681 0.7803 31 1 3.0095 -0.3405 -0.9694 32 1 4.6228 1.9599 2.3565 33 1 4.7641 0.2159 2.0297 34 1 6.1419 1.2956 1.7084 35 1 7.5431 1.8476 0.8079 36 1 7.9093 1.8872 -0.9699 37 1 8.1196 4.2263 1.0668 38 1 9.1614 3.9183 -0.3943 39 1 5.3789 5.6600 -0.8211 40 1 6.4447 5.7349 0.6024 41 1 7.8990 6.4769 -1.7294 42 1 8.7344 8.9870 -1.2152 43 1 7.5794 9.0174 -2.5693 44 1 6.9957 14.5988 -0.7715 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738641703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:48 Heat of formation + Delta-G solvation = -45.396783 kcal Electronic energy + Delta-G solvation = -25901.650810 eV Core-core repulsion = 21947.806681 eV Total energy + Delta-G solvation = -3953.844129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.81479 -40.57529 -39.71082 -38.38820 -35.80949 -34.58378 -34.49833 -32.88810 -31.55715 -30.33463 -28.79430 -28.12847 -27.63085 -25.28200 -24.16977 -22.77587 -21.95460 -20.24350 -19.85244 -19.42823 -18.24442 -18.01162 -17.85853 -17.59223 -16.88278 -16.84113 -16.68837 -16.59665 -16.13422 -15.78646 -15.39603 -15.25375 -14.91719 -14.69399 -14.48228 -14.07876 -13.92015 -13.68087 -13.58072 -13.49918 -13.23085 -13.16160 -12.91997 -12.85414 -12.65223 -12.58388 -12.20759 -11.75948 -11.74062 -11.63755 -11.57625 -11.15926 -11.05460 -10.89098 -10.50950 -10.26741 -10.17805 -9.81208 -8.68262 -8.34486 -6.13523 1.14961 1.28198 1.42311 1.46011 1.48740 1.56894 1.57774 1.74821 1.77056 2.26936 2.32204 2.93187 2.99833 3.24614 3.32082 3.43251 3.59760 3.69960 3.85754 3.95159 3.97191 4.02389 4.03308 4.19535 4.30440 4.36428 4.42927 4.49672 4.50563 4.53684 4.67643 4.75163 4.82485 4.92436 4.97924 5.03648 5.21807 5.26813 5.36605 5.42299 5.99344 6.20332 6.46713 6.55228 6.63174 7.05381 7.06538 7.22129 8.75200 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021520 B = 0.001772 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.811836 B =15793.361246 C =16704.001878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.239 4.239 3 C 0.166 3.834 4 O -0.394 6.394 5 C 0.082 3.918 6 H 0.129 0.871 7 C -0.168 4.168 8 C 0.527 3.473 9 O -0.580 6.580 10 N -0.645 5.645 11 C 0.101 3.899 12 C -0.138 4.138 13 C 0.120 3.880 14 H 0.128 0.872 15 C 0.121 3.879 16 N -0.703 5.703 17 C 0.531 3.469 18 O -0.572 6.572 19 C -0.124 4.124 20 S -0.162 6.162 21 C -0.543 4.543 22 H 0.087 0.913 23 C 0.010 3.990 24 N -0.914 5.914 25 Si 1.003 2.997 26 H -0.253 1.253 27 H -0.276 1.276 28 H -0.274 1.274 29 H 0.250 0.750 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.043 0.957 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.125 0.875 37 H 0.088 0.912 38 H 0.130 0.870 39 H 0.036 0.964 40 H 0.052 0.948 41 H 0.422 0.578 42 H 0.119 0.881 43 H 0.112 0.888 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.484 -37.531 -0.407 37.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.239 4.239 3 C 0.091 3.909 4 O -0.314 6.314 5 C 0.021 3.979 6 H 0.147 0.853 7 C -0.225 4.225 8 C 0.317 3.683 9 O -0.458 6.458 10 N -0.383 5.383 11 C -0.019 4.019 12 C -0.175 4.175 13 C 0.016 3.984 14 H 0.145 0.855 15 C -0.004 4.004 16 N -0.359 5.359 17 C 0.317 3.683 18 O -0.450 6.450 19 C -0.275 4.275 20 S 0.066 5.934 21 C -0.691 4.691 22 H 0.105 0.895 23 C -0.194 4.194 24 N -0.550 5.550 25 Si 0.824 3.176 26 H -0.177 1.177 27 H -0.201 1.201 28 H -0.199 1.199 29 H 0.266 0.734 30 H 0.124 0.876 31 H 0.113 0.887 32 H 0.062 0.938 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.143 0.857 37 H 0.106 0.894 38 H 0.148 0.852 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.260 0.740 42 H 0.137 0.863 43 H 0.130 0.870 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.117 -36.468 0.887 36.611 hybrid contribution 0.834 0.814 -1.430 1.845 sum 3.951 -35.653 -0.543 35.876 Atomic orbital electron populations 1.25891 0.97034 0.96105 0.99569 1.23241 0.95270 1.03468 1.01940 1.19489 0.84293 0.84134 1.02972 1.88096 1.20649 1.29684 1.92955 1.22002 0.82051 0.93499 1.00321 0.85312 1.22320 1.03235 1.03898 0.93092 1.20799 0.80518 0.90089 0.76885 1.90773 1.50994 1.51564 1.52485 1.49831 1.04175 1.20557 1.63717 1.23479 0.77460 0.96460 1.04492 1.23628 0.98265 0.95500 1.00139 1.23239 0.89627 0.83931 1.01603 0.85462 1.21382 0.94982 0.86683 0.97338 1.45458 1.38260 1.03661 1.48481 1.20239 0.83046 0.84231 0.80824 1.90717 1.33006 1.83948 1.37348 1.23336 1.03699 0.95966 1.04509 1.85737 1.49359 0.96341 1.62004 1.23247 1.20913 0.93663 1.31267 0.89526 1.26193 0.97573 0.99283 0.96356 1.70212 1.34013 1.13571 1.37229 0.84853 0.77617 0.77351 0.77780 1.17692 1.20145 1.19893 0.73395 0.87650 0.88708 0.93779 0.88622 0.88048 0.87533 0.85739 0.89363 0.85163 0.94594 0.92972 0.74002 0.86296 0.86965 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 19.25 74.32 1.43 -1.35 16 2 C -0.24 -4.57 13.73 31.12 0.43 -4.15 16 3 C 0.17 2.33 6.22 70.18 0.44 2.76 16 4 O -0.39 -8.84 9.48 -129.99 -1.23 -10.07 16 5 C 0.08 1.21 2.99 29.85 0.09 1.30 16 6 H 0.13 0.78 7.79 -2.39 -0.02 0.76 16 7 C -0.17 -1.59 9.44 71.98 0.68 -0.91 16 8 C 0.53 12.44 7.36 87.65 0.64 13.09 16 9 O -0.58 -21.82 15.88 15.95 0.25 -21.57 16 10 N -0.65 -9.83 3.55 -833.21 -2.96 -12.79 16 11 C 0.10 0.29 8.06 83.18 0.67 0.96 16 12 C -0.14 -0.82 8.03 31.01 0.25 -0.57 16 13 C 0.12 1.73 4.09 41.88 0.17 1.90 16 14 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 15 C 0.12 3.32 5.40 86.38 0.47 3.78 16 16 N -0.70 -18.57 5.55 -463.07 -2.57 -21.14 16 17 C 0.53 20.86 7.85 87.66 0.69 21.55 16 18 O -0.57 -29.32 15.86 -3.04 -0.05 -29.37 16 19 C -0.12 -4.97 6.16 71.24 0.44 -4.53 16 20 S -0.16 -9.24 20.57 -56.49 -1.16 -10.40 16 21 C -0.54 -31.32 9.50 67.95 0.65 -30.68 16 22 H 0.09 4.58 7.80 -2.91 -0.02 4.56 16 23 C 0.01 0.60 5.49 84.86 0.47 1.06 16 24 N -0.91 -57.25 13.22 21.65 0.29 -56.97 16 25 Si 1.00 43.93 29.55 68.60 2.03 45.95 16 26 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 27 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 28 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 29 H 0.25 2.07 7.80 -4.41 -0.03 2.04 16 30 H 0.11 0.76 7.87 -2.38 -0.02 0.74 16 31 H 0.10 0.87 8.08 -2.38 -0.02 0.85 16 32 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.10 0.45 7.87 -2.39 -0.02 0.44 16 34 H 0.10 0.39 5.53 -2.39 -0.01 0.37 16 35 H 0.11 -0.10 5.95 -2.39 -0.01 -0.12 16 36 H 0.12 -0.36 8.14 -2.39 -0.02 -0.38 16 37 H 0.09 0.83 7.97 -2.39 -0.02 0.81 16 38 H 0.13 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.04 1.34 7.04 -2.39 -0.02 1.32 16 40 H 0.05 1.64 7.90 -2.39 -0.02 1.62 16 41 H 0.42 6.92 8.48 -92.71 -0.79 6.13 16 42 H 0.12 4.10 8.14 -2.40 -0.02 4.08 16 43 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 44 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -102.00 395.79 2.33 -99.67 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.23 Total: 12.46 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 7.50 Total: 4.22 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -5.24 Total: -90.90 kcal Atomic # 8 Polarization: -59.97 SS G_CDS: -1.03 Total: -61.00 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -9.24 SS G_CDS: -1.16 Total: -10.40 kcal Total: -102.00 2.33 -99.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738641703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.268 kcal (2) G-P(sol) polarization free energy of solvation -101.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds