Wall clock time and date at job start Sat Apr 11 2020 05:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.46942 * 2 1 4 4 C 1.46501 * 119.99597 * 275.78769 * 3 2 1 5 5 C 1.52995 * 109.47483 * 269.99877 * 4 3 2 6 6 N 1.46497 * 109.47107 * 180.02562 * 5 4 3 7 7 C 1.34779 * 120.00036 * 180.02562 * 6 5 4 8 8 O 1.21283 * 120.00100 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00069 * 180.02562 * 7 6 5 10 10 S 1.81001 * 109.47122 * 179.97438 * 9 7 6 11 11 C 1.76191 * 100.00189 * 179.97438 * 10 9 7 12 12 H 1.08008 * 120.00073 * 0.02562 * 11 10 9 13 13 C 1.38797 * 120.00329 * 179.97438 * 11 10 9 14 14 N 1.31637 * 119.99992 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00390 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46848 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47547 * 119.99713 * 15 13 11 18 18 H 1.48497 * 109.47346 * 240.00138 * 15 13 11 19 19 C 1.34766 * 120.00205 * 95.79525 * 3 2 1 20 20 O 1.21613 * 120.00447 * 183.41991 * 19 3 2 21 21 C 1.47381 * 120.00125 * 3.41223 * 19 3 2 22 22 C 1.36410 * 127.19719 * 154.82434 * 21 19 3 23 23 O 1.33655 * 108.40208 * 180.02562 * 22 21 19 24 24 C 1.34213 * 110.90618 * 0.02562 * 23 22 21 25 25 C 1.50697 * 125.43719 * 179.97438 * 24 23 22 26 26 C 1.34178 * 109.12532 * 0.02562 * 24 23 22 27 27 H 1.09007 * 109.46742 * 178.13322 * 1 2 3 28 28 H 1.08998 * 109.46951 * 298.13134 * 1 2 3 29 29 H 1.08997 * 109.47337 * 58.13725 * 1 2 3 30 30 H 1.09003 * 109.47149 * 240.00079 * 2 1 3 31 31 H 1.08994 * 109.47442 * 120.00132 * 2 1 3 32 32 H 1.08995 * 109.47126 * 30.00767 * 4 3 2 33 33 H 1.09007 * 109.46477 * 150.00189 * 4 3 2 34 34 H 1.09004 * 109.47464 * 300.00435 * 5 4 3 35 35 H 1.09001 * 109.47096 * 60.00231 * 5 4 3 36 36 H 0.97002 * 120.00433 * 359.97438 * 6 5 4 37 37 H 1.08999 * 109.47046 * 299.99392 * 9 7 6 38 38 H 1.08996 * 109.47408 * 59.99953 * 9 7 6 39 39 H 0.96997 * 119.99946 * 180.02562 * 14 13 11 40 40 H 1.08004 * 125.79781 * 359.97438 * 22 21 19 41 41 H 1.09004 * 109.47096 * 270.00191 * 25 24 23 42 42 H 1.09001 * 109.46931 * 30.00125 * 25 24 23 43 43 H 1.09007 * 109.47088 * 150.00191 * 25 24 23 44 44 H 1.08002 * 127.02416 * 179.73495 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1417 2.1144 -1.2623 5 6 3.5378 1.8914 -1.8473 6 7 3.6614 2.6251 -3.1092 7 6 4.8129 2.5751 -3.8079 8 8 5.7469 1.9230 -3.3915 9 6 4.9402 3.3303 -5.1058 10 16 6.5917 3.0663 -5.7979 11 6 6.4665 4.0328 -7.2657 12 1 5.5499 4.5584 -7.4897 13 6 7.5460 4.1197 -8.1337 14 7 8.6637 3.4804 -7.8601 15 14 7.4135 5.1449 -9.6896 16 1 6.0633 5.7586 -9.7644 17 1 8.4433 6.2146 -9.6669 18 1 7.6281 4.2762 -10.8746 19 6 2.3540 1.9773 1.1611 20 8 2.6999 3.1432 1.1684 21 6 2.3017 1.2163 2.4222 22 6 3.0149 1.4559 3.5601 23 8 2.6762 0.5386 4.4712 24 6 1.7587 -0.3087 3.9797 25 6 1.1494 -1.4667 4.7273 26 6 1.4715 0.0390 2.7160 27 1 -0.3633 -1.0272 -0.0335 28 1 -0.3633 0.4845 0.9063 29 1 -0.3634 0.5425 -0.8728 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.3911 1.7550 -1.9662 33 1 1.9896 3.1785 -1.0808 34 1 4.2884 2.2509 -1.1434 35 1 3.6899 0.8274 -2.0288 36 1 2.9142 3.1464 -3.4425 37 1 4.1893 2.9718 -5.8099 38 1 4.7889 4.3942 -4.9235 39 1 9.4183 3.5414 -8.4665 40 1 3.7321 2.2511 3.7005 41 1 1.7525 -2.3604 4.5671 42 1 1.1181 -1.2355 5.7921 43 1 0.1368 -1.6415 4.3635 44 1 0.7753 -0.4484 2.0496 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001745282600.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:05 Heat of formation + Delta-G solvation = -47.957934 kcal Electronic energy + Delta-G solvation = -26064.600666 eV Core-core repulsion = 22110.645477 eV Total energy + Delta-G solvation = -3953.955189 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.03902 -40.17821 -39.02889 -36.65817 -34.87978 -33.53592 -32.43671 -32.41005 -31.43333 -29.96614 -28.06787 -27.10951 -25.48930 -24.47981 -23.86127 -22.43694 -21.35588 -20.38543 -19.04915 -17.91188 -17.77065 -17.15408 -16.73626 -16.65166 -16.23738 -15.67170 -15.37482 -15.10858 -14.86646 -14.78923 -14.29716 -13.97999 -13.87449 -13.76356 -13.62656 -13.53319 -13.18409 -13.05016 -12.74471 -12.58424 -12.43722 -12.28324 -12.19893 -12.00889 -11.63426 -11.35839 -11.05698 -11.00351 -10.74913 -10.38035 -10.03777 -9.79659 -9.44506 -9.15353 -9.06407 -8.93529 -8.88760 -8.21247 -6.48241 -6.20281 -3.90636 1.04096 1.55528 2.33652 2.50271 2.91506 3.11706 3.12785 3.22783 3.30274 3.36618 3.79803 3.98806 4.21762 4.24208 4.45623 4.52626 4.62557 4.67704 4.80335 4.84862 4.88811 4.91807 4.97510 5.14834 5.15081 5.17945 5.22465 5.24846 5.30291 5.34469 5.59928 5.63413 5.69823 5.73042 5.84740 5.87374 5.91942 6.14865 6.16660 6.58144 6.61237 6.99460 7.61392 7.70201 7.84010 8.36986 8.62742 9.25139 10.87235 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.029079 B = 0.001728 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.675784 B =16200.525621 C =16485.246631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.083 3.917 3 N -0.600 5.600 4 C 0.106 3.894 5 C 0.108 3.892 6 N -0.737 5.737 7 C 0.533 3.467 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.590 3.410 20 O -0.534 6.534 21 C -0.238 4.238 22 C 0.050 3.950 23 O -0.174 6.174 24 C -0.010 4.010 25 C -0.076 4.076 26 C -0.203 4.203 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.398 0.602 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.268 0.732 40 H 0.218 0.782 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.739 -10.322 23.915 33.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.039 4.039 3 N -0.333 5.333 4 C -0.017 4.017 5 C -0.017 4.017 6 N -0.392 5.392 7 C 0.319 3.681 8 O -0.391 6.391 9 C -0.303 4.303 10 S 0.166 5.834 11 C -0.683 4.683 12 H 0.092 0.908 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.746 3.254 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 C 0.380 3.620 20 O -0.412 6.412 21 C -0.242 4.242 22 C -0.020 4.020 23 O -0.069 6.069 24 C -0.059 4.059 25 C -0.133 4.133 26 C -0.222 4.222 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.119 0.881 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.232 0.768 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.234 0.766 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.109 0.891 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -19.705 -10.884 24.850 33.530 hybrid contribution -1.560 1.675 -1.947 3.005 sum -21.265 -9.209 22.903 32.582 Atomic orbital electron populations 1.22299 0.95686 1.02647 1.02949 1.22158 0.94571 0.82347 1.04857 1.47569 1.65323 1.14558 1.05845 1.21584 0.96628 0.98803 0.84680 1.21551 0.96987 0.97186 0.86006 1.45833 1.16560 1.53218 1.23583 1.20311 0.81596 0.80928 0.85277 1.90706 1.37974 1.40981 1.69403 1.23526 1.07976 1.02471 0.96355 1.85411 1.06991 1.65923 1.25102 1.22915 1.02683 1.34856 1.07850 0.90848 1.24998 0.94486 0.95794 0.98352 1.70033 1.03015 1.40374 1.36880 0.86108 0.78281 0.79531 0.81516 1.19620 1.20565 1.20585 1.17339 0.76472 0.85706 0.82491 1.90836 1.47629 1.16023 1.86689 1.21328 1.05425 1.01168 0.96271 1.24374 0.99308 0.92478 0.85885 1.83776 1.48001 1.34363 1.40798 1.22408 0.93973 0.95255 0.94246 1.20366 1.00403 0.92251 1.00245 1.23126 1.04619 0.98135 0.96329 0.91054 0.91928 0.91803 0.90061 0.88071 0.89661 0.88886 0.91298 0.91568 0.76778 0.89161 0.89117 0.92249 0.76578 0.89747 0.90291 0.89134 0.81248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.83 9.08 37.16 0.34 -0.49 16 2 C 0.08 0.53 5.62 -4.04 -0.02 0.50 16 3 N -0.60 -5.64 2.47 -174.98 -0.43 -6.07 16 4 C 0.11 1.01 5.57 -4.04 -0.02 0.98 16 5 C 0.11 1.38 6.00 -4.05 -0.02 1.35 16 6 N -0.74 -10.20 5.56 -60.29 -0.33 -10.53 16 7 C 0.53 10.28 7.85 -10.98 -0.09 10.19 16 8 O -0.52 -12.19 15.86 5.55 0.09 -12.10 16 9 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 10 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 11 C -0.53 -15.40 9.50 30.94 0.29 -15.11 16 12 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 13 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.41 13.22 55.49 0.73 -25.68 16 15 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 C 0.59 6.92 7.64 -12.54 -0.10 6.83 16 20 O -0.53 -8.15 16.56 5.27 0.09 -8.06 16 21 C -0.24 -2.28 5.84 -103.27 -0.60 -2.89 16 22 C 0.05 0.43 11.99 30.07 0.36 0.79 16 23 O -0.17 -1.43 10.52 7.65 0.08 -1.35 16 24 C -0.01 -0.07 7.28 -35.74 -0.26 -0.33 16 25 C -0.08 -0.22 10.40 36.00 0.37 0.15 16 26 C -0.20 -1.42 8.22 -37.45 -0.31 -1.73 16 27 H 0.07 0.21 8.14 -51.92 -0.42 -0.21 16 28 H 0.06 0.32 6.95 -51.93 -0.36 -0.04 16 29 H 0.06 0.32 8.13 -51.93 -0.42 -0.10 16 30 H 0.08 0.48 8.11 -51.93 -0.42 0.05 16 31 H 0.10 0.61 4.29 -51.93 -0.22 0.38 16 32 H 0.09 0.59 8.06 -51.93 -0.42 0.18 16 33 H 0.09 0.98 7.38 -51.92 -0.38 0.59 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.40 4.16 8.47 -40.82 -0.35 3.81 16 37 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 38 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 39 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.22 1.44 8.06 -52.48 -0.42 1.02 16 41 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 42 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.09 0.12 8.14 -51.92 -0.42 -0.31 16 44 H 0.17 0.81 4.19 -52.49 -0.22 0.59 16 LS Contribution 387.19 15.07 5.83 5.83 Total: -1.00 -38.64 387.19 -7.25 -45.89 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -6.14 Total: 0.03 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 0.07 Total: -0.64 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: -0.03 Total: -42.28 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: 0.26 Total: -21.51 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.64 -7.25 -45.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745282600.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.065 kcal (2) G-P(sol) polarization free energy of solvation -38.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds