Wall clock time and date at job start Sat Apr 11 2020 05:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 O 1.42901 * 109.47356 * 55.22605 * 3 2 1 5 5 C 1.42900 * 114.00152 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47120 * 330.00513 * 5 4 3 7 7 C 1.53003 * 109.46677 * 90.00552 * 5 4 3 8 8 C 1.50703 * 109.47212 * 210.00610 * 5 4 3 9 9 O 1.21281 * 119.99667 * 354.99806 * 8 5 4 10 10 N 1.34769 * 119.99922 * 175.00764 * 8 5 4 11 11 C 1.46503 * 119.99974 * 179.97438 * 10 8 5 12 12 C 1.52996 * 109.47355 * 184.97642 * 11 10 8 13 13 H 1.09003 * 112.78279 * 314.88665 * 12 11 10 14 14 C 1.53755 * 113.55226 * 85.74085 * 12 11 10 15 15 C 1.53500 * 83.25862 * 140.99071 * 14 12 11 16 16 N 1.47070 * 113.46947 * 184.10333 * 12 11 10 17 17 C 1.34769 * 136.05848 * 38.14049 * 16 12 11 18 18 O 1.21288 * 119.99831 * 354.63927 * 17 16 12 19 19 C 1.50698 * 120.00200 * 174.64564 * 17 16 12 20 20 S 1.81004 * 109.47177 * 179.97438 * 19 17 16 21 21 C 1.76194 * 100.00009 * 179.97438 * 20 19 17 22 22 H 1.08003 * 120.00305 * 359.97438 * 21 20 19 23 23 C 1.38805 * 120.00055 * 180.27708 * 21 20 19 24 24 N 1.31633 * 119.99584 * 359.72013 * 23 21 20 25 25 Si 1.86800 * 120.00095 * 179.72403 * 23 21 20 26 26 H 1.48498 * 109.47400 * 89.99589 * 25 23 21 27 27 H 1.48499 * 109.46797 * 210.00001 * 25 23 21 28 28 H 1.48496 * 109.47015 * 329.99690 * 25 23 21 29 29 H 4.38452 * 5.44382 * 180.02562 * 4 1 2 30 30 H 1.09002 * 109.47306 * 295.23013 * 3 2 1 31 31 H 1.08999 * 109.47339 * 175.23336 * 3 2 1 32 32 H 1.09000 * 109.47377 * 60.00118 * 7 5 4 33 33 H 1.09003 * 109.46572 * 179.97438 * 7 5 4 34 34 H 1.08993 * 109.46950 * 299.99407 * 7 5 4 35 35 H 0.97000 * 120.00235 * 359.97438 * 10 8 5 36 36 H 1.08999 * 109.47114 * 64.97644 * 11 10 8 37 37 H 1.08995 * 109.47290 * 304.97639 * 11 10 8 38 38 H 1.08998 * 114.39379 * 27.43039 * 14 12 11 39 39 H 1.09008 * 114.08930 * 254.53003 * 14 12 11 40 40 H 1.08998 * 113.46473 * 218.98786 * 15 14 12 41 41 H 1.08994 * 113.46951 * 88.54336 * 15 14 12 42 42 H 1.08996 * 109.47639 * 59.99297 * 19 17 16 43 43 H 1.09001 * 109.46871 * 299.99064 * 19 17 16 44 44 H 0.96997 * 119.99362 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1227 -0.7675 -1.1067 5 6 4.5472 -0.8308 -1.1997 6 1 4.9791 0.0813 -0.7877 7 6 5.0567 -2.0382 -0.4100 8 6 4.9507 -0.9692 -2.6451 9 8 4.1021 -1.1009 -3.5015 10 7 6.2544 -0.9467 -2.9859 11 6 6.6466 -1.0819 -4.3910 12 6 8.1718 -1.1490 -4.4906 13 1 8.6685 -0.4003 -3.8735 14 6 8.7377 -2.5668 -4.3069 15 6 9.7012 -2.1310 -5.4195 16 7 8.6672 -1.1894 -5.8747 17 6 8.3271 -0.6126 -7.0443 18 8 7.3323 0.0778 -7.1133 19 6 9.1828 -0.8255 -8.2664 20 16 8.4683 0.0712 -9.6670 21 6 9.6351 -0.3406 -10.9213 22 1 10.4771 -0.9756 -10.6882 23 6 9.4756 0.1561 -12.2076 24 7 8.4496 0.9303 -12.4916 25 14 10.7169 -0.2742 -13.5356 26 1 10.2895 -1.5158 -14.2291 27 1 10.7979 0.8379 -14.5163 28 1 12.0500 -0.4867 -12.9169 29 1 -1.0499 0.0001 -0.0002 30 1 3.0095 -0.4372 0.9296 31 1 3.0089 1.0249 -0.0854 32 1 4.6248 -2.9503 -0.8220 33 1 6.1433 -2.0867 -0.4813 34 1 4.7650 -1.9380 0.6354 35 1 6.9330 -0.8411 -2.3010 36 1 6.2832 -0.2221 -4.9539 37 1 6.2151 -1.9943 -4.8025 38 1 8.0539 -3.3652 -4.5952 39 1 9.2158 -2.7335 -3.3416 40 1 9.9174 -2.9198 -6.1400 41 1 10.6009 -1.6411 -5.0473 42 1 9.2247 -1.8894 -8.4998 43 1 10.1899 -0.4559 -8.0736 44 1 8.3380 1.2771 -13.3905 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001747666784.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:12 Heat of formation + Delta-G solvation = -15.621235 kcal Electronic energy + Delta-G solvation = -25846.483382 eV Core-core repulsion = 21893.930418 eV Total energy + Delta-G solvation = -3952.552964 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.71099 -39.99851 -38.17524 -37.51397 -34.87543 -33.84866 -32.43160 -31.92328 -30.70532 -28.57508 -28.10232 -27.54657 -25.48282 -24.71722 -23.04640 -22.16060 -20.84156 -19.25027 -18.82209 -17.84132 -17.61323 -17.32808 -16.68585 -16.26135 -15.97180 -15.63807 -15.40087 -15.06532 -14.80695 -14.74795 -14.30958 -13.99831 -13.92287 -13.71426 -13.39697 -13.04091 -12.84762 -12.71506 -12.69139 -12.51974 -12.10339 -11.93862 -11.88471 -11.68255 -11.08381 -11.06729 -11.03750 -10.95087 -10.87131 -10.76634 -10.22613 -9.83054 -9.77045 -9.46918 -9.17579 -9.06903 -8.69100 -8.24120 -6.50831 -6.21654 -3.92711 1.95433 2.39851 2.42918 2.50906 2.90938 3.04644 3.22345 3.24499 3.29912 3.53062 3.62523 4.02846 4.10547 4.19816 4.29930 4.40644 4.52241 4.56756 4.63875 4.69099 4.76110 4.90988 4.91917 5.05018 5.12340 5.13583 5.18574 5.29041 5.42725 5.50770 5.51502 5.60165 5.63229 5.78973 5.82689 5.94083 6.01237 6.12371 6.22822 6.53918 7.19147 7.21119 7.59189 7.79024 8.00760 8.34878 8.50196 9.23352 10.85772 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019874 B = 0.001842 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.521908 B =15195.827113 C =16411.464925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.196 4.196 3 C 0.171 3.829 4 O -0.351 6.351 5 C 0.073 3.927 6 H 0.091 0.909 7 C -0.171 4.171 8 C 0.511 3.489 9 O -0.508 6.508 10 N -0.725 5.725 11 C 0.113 3.887 12 C 0.123 3.877 13 H 0.095 0.905 14 C -0.151 4.151 15 C 0.101 3.899 16 N -0.647 5.647 17 C 0.561 3.439 18 O -0.507 6.507 19 C -0.144 4.144 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.073 0.927 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.223 0.777 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.398 0.602 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.357 -6.595 31.155 31.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.196 4.196 3 C 0.096 3.904 4 O -0.269 6.269 5 C 0.011 3.989 6 H 0.108 0.892 7 C -0.229 4.229 8 C 0.295 3.705 9 O -0.381 6.381 10 N -0.379 5.379 11 C -0.010 4.010 12 C 0.019 3.981 13 H 0.113 0.887 14 C -0.189 4.189 15 C -0.022 4.022 16 N -0.387 5.387 17 C 0.351 3.649 18 O -0.380 6.380 19 C -0.295 4.295 20 S 0.168 5.832 21 C -0.684 4.684 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.746 3.254 26 H -0.202 1.202 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.239 0.761 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.232 0.768 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.758 -5.527 29.873 30.611 hybrid contribution 2.382 -0.804 -0.308 2.533 sum -1.376 -6.331 29.565 30.266 Atomic orbital electron populations 1.25006 0.95931 0.99339 0.98186 1.22386 0.93791 1.01480 1.01973 1.19177 0.85184 0.95993 0.90094 1.88146 1.18803 1.72057 1.47896 1.21907 0.83129 1.00225 0.93628 0.89170 1.22252 1.01738 0.98304 1.00566 1.20281 0.82586 0.77334 0.90280 1.90799 1.49936 1.46330 1.51061 1.45743 1.07006 1.75742 1.09454 1.21627 0.93533 1.04502 0.81365 1.22813 0.94125 0.97173 0.84005 0.88721 1.23640 0.99306 0.96421 0.99549 1.22889 0.92371 0.91670 0.95315 1.49759 1.33837 1.48705 1.06412 1.20022 0.85315 0.77594 0.82015 1.90735 1.26185 1.37521 1.83608 1.23476 1.02246 1.05875 0.97872 1.85450 1.36006 1.63493 0.98276 1.22855 1.12634 1.36595 0.96361 0.90927 1.24999 0.96136 0.94544 0.97895 1.70021 1.27987 1.31132 1.21052 0.86157 0.80611 0.78203 0.80459 1.20243 1.20731 1.19711 0.76060 0.90578 0.90550 0.90832 0.90656 0.91052 0.76806 0.89333 0.90415 0.88390 0.89253 0.89982 0.89747 0.89312 0.89294 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 19.25 29.55 0.57 -0.82 16 2 C -0.20 -1.89 13.73 -37.13 -0.51 -2.40 16 3 C 0.17 1.30 6.22 34.37 0.21 1.52 16 4 O -0.35 -3.85 9.48 -55.09 -0.52 -4.37 16 5 C 0.07 0.56 3.13 -27.88 -0.09 0.48 16 6 H 0.09 0.40 7.79 -51.93 -0.40 0.00 16 7 C -0.17 -0.83 9.48 37.16 0.35 -0.48 16 8 C 0.51 5.96 7.18 -10.99 -0.08 5.88 16 9 O -0.51 -9.03 16.50 -14.30 -0.24 -9.26 16 10 N -0.72 -6.36 5.51 -60.30 -0.33 -6.70 16 11 C 0.11 1.39 5.40 -4.04 -0.02 1.36 16 12 C 0.12 1.19 4.09 -72.26 -0.30 0.90 16 13 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 14 C -0.15 -1.00 8.03 -26.08 -0.21 -1.20 16 15 C 0.10 0.87 8.41 -8.50 -0.07 0.80 16 16 N -0.65 -8.79 3.56 -177.27 -0.63 -9.42 16 17 C 0.56 10.81 8.02 -10.99 -0.09 10.72 16 18 O -0.51 -11.86 15.24 5.55 0.08 -11.77 16 19 C -0.14 -2.98 5.99 36.00 0.22 -2.76 16 20 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 21 C -0.54 -15.40 9.50 30.94 0.29 -15.11 16 22 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.40 13.22 55.49 0.73 -25.67 16 25 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 H 0.22 1.01 7.80 -54.09 -0.42 0.58 16 30 H 0.08 0.35 7.87 -51.93 -0.41 -0.05 16 31 H 0.08 0.44 8.08 -51.93 -0.42 0.02 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.19 7.92 -51.93 -0.41 -0.22 16 34 H 0.07 0.24 7.87 -51.93 -0.41 -0.17 16 35 H 0.40 1.78 8.26 -40.82 -0.34 1.45 16 36 H 0.09 1.47 7.05 -51.93 -0.37 1.11 16 37 H 0.08 1.08 7.90 -51.93 -0.41 0.67 16 38 H 0.10 0.72 7.97 -51.93 -0.41 0.30 16 39 H 0.09 0.31 8.14 -51.92 -0.42 -0.11 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 43 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 400.52 15.07 6.04 6.04 Total: -1.00 -41.24 400.52 -8.42 -49.66 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -6.51 Total: -2.07 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 0.19 Total: 0.91 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: -0.23 Total: -41.78 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.67 Total: -25.41 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -41.24 -8.42 -49.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747666784.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.042 kcal (2) G-P(sol) polarization free energy of solvation -41.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds