Wall clock time and date at job start Sat Apr 11 2020 05:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 O 1.42901 * 109.47356 * 55.22605 * 3 2 1 5 5 C 1.42900 * 114.00152 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47120 * 330.00513 * 5 4 3 7 7 C 1.53003 * 109.46677 * 90.00552 * 5 4 3 8 8 C 1.50703 * 109.47212 * 210.00610 * 5 4 3 9 9 O 1.21281 * 119.99667 * 354.99806 * 8 5 4 10 10 N 1.34769 * 119.99922 * 175.00764 * 8 5 4 11 11 C 1.46503 * 119.99974 * 179.97438 * 10 8 5 12 12 C 1.52996 * 109.47355 * 184.97642 * 11 10 8 13 13 H 1.09003 * 112.78279 * 314.88665 * 12 11 10 14 14 C 1.53755 * 113.55226 * 85.74085 * 12 11 10 15 15 C 1.53500 * 83.25862 * 140.99071 * 14 12 11 16 16 N 1.47070 * 113.46947 * 184.10333 * 12 11 10 17 17 C 1.34769 * 136.05848 * 38.14049 * 16 12 11 18 18 O 1.21288 * 119.99831 * 354.63927 * 17 16 12 19 19 C 1.50698 * 120.00200 * 174.64564 * 17 16 12 20 20 S 1.81004 * 109.47177 * 179.97438 * 19 17 16 21 21 C 1.76194 * 100.00009 * 179.97438 * 20 19 17 22 22 H 1.08003 * 120.00305 * 359.97438 * 21 20 19 23 23 C 1.38805 * 120.00055 * 180.27708 * 21 20 19 24 24 N 1.31633 * 119.99584 * 359.72013 * 23 21 20 25 25 Si 1.86800 * 120.00095 * 179.72403 * 23 21 20 26 26 H 1.48498 * 109.47400 * 89.99589 * 25 23 21 27 27 H 1.48499 * 109.46797 * 210.00001 * 25 23 21 28 28 H 1.48496 * 109.47015 * 329.99690 * 25 23 21 29 29 H 4.38452 * 5.44382 * 180.02562 * 4 1 2 30 30 H 1.09002 * 109.47306 * 295.23013 * 3 2 1 31 31 H 1.08999 * 109.47339 * 175.23336 * 3 2 1 32 32 H 1.09000 * 109.47377 * 60.00118 * 7 5 4 33 33 H 1.09003 * 109.46572 * 179.97438 * 7 5 4 34 34 H 1.08993 * 109.46950 * 299.99407 * 7 5 4 35 35 H 0.97000 * 120.00235 * 359.97438 * 10 8 5 36 36 H 1.08999 * 109.47114 * 64.97644 * 11 10 8 37 37 H 1.08995 * 109.47290 * 304.97639 * 11 10 8 38 38 H 1.08998 * 114.39379 * 27.43039 * 14 12 11 39 39 H 1.09008 * 114.08930 * 254.53003 * 14 12 11 40 40 H 1.08998 * 113.46473 * 218.98786 * 15 14 12 41 41 H 1.08994 * 113.46951 * 88.54336 * 15 14 12 42 42 H 1.08996 * 109.47639 * 59.99297 * 19 17 16 43 43 H 1.09001 * 109.46871 * 299.99064 * 19 17 16 44 44 H 0.96997 * 119.99362 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1227 -0.7675 -1.1067 5 6 4.5472 -0.8308 -1.1997 6 1 4.9791 0.0813 -0.7877 7 6 5.0567 -2.0382 -0.4100 8 6 4.9507 -0.9692 -2.6451 9 8 4.1021 -1.1009 -3.5015 10 7 6.2544 -0.9467 -2.9859 11 6 6.6466 -1.0819 -4.3910 12 6 8.1718 -1.1490 -4.4906 13 1 8.6685 -0.4003 -3.8735 14 6 8.7377 -2.5668 -4.3069 15 6 9.7012 -2.1310 -5.4195 16 7 8.6672 -1.1894 -5.8747 17 6 8.3271 -0.6126 -7.0443 18 8 7.3323 0.0778 -7.1133 19 6 9.1828 -0.8255 -8.2664 20 16 8.4683 0.0712 -9.6670 21 6 9.6351 -0.3406 -10.9213 22 1 10.4771 -0.9756 -10.6882 23 6 9.4756 0.1561 -12.2076 24 7 8.4496 0.9303 -12.4916 25 14 10.7169 -0.2742 -13.5356 26 1 10.2895 -1.5158 -14.2291 27 1 10.7979 0.8379 -14.5163 28 1 12.0500 -0.4867 -12.9169 29 1 -1.0499 0.0001 -0.0002 30 1 3.0095 -0.4372 0.9296 31 1 3.0089 1.0249 -0.0854 32 1 4.6248 -2.9503 -0.8220 33 1 6.1433 -2.0867 -0.4813 34 1 4.7650 -1.9380 0.6354 35 1 6.9330 -0.8411 -2.3010 36 1 6.2832 -0.2221 -4.9539 37 1 6.2151 -1.9943 -4.8025 38 1 8.0539 -3.3652 -4.5952 39 1 9.2158 -2.7335 -3.3416 40 1 9.9174 -2.9198 -6.1400 41 1 10.6009 -1.6411 -5.0473 42 1 9.2247 -1.8894 -8.4998 43 1 10.1899 -0.4559 -8.0736 44 1 8.3380 1.2771 -13.3905 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001747666784.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:11 Heat of formation + Delta-G solvation = -47.604645 kcal Electronic energy + Delta-G solvation = -25847.870287 eV Core-core repulsion = 21893.930418 eV Total energy + Delta-G solvation = -3953.939869 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.68843 -40.91468 -39.06363 -38.73801 -35.88726 -34.61351 -34.45342 -32.64541 -31.98077 -29.47011 -29.34123 -28.08744 -27.67175 -25.37487 -23.81451 -23.16552 -21.71649 -20.31220 -19.75701 -19.40292 -18.47803 -18.11644 -17.90099 -17.15460 -16.91908 -16.87474 -16.67622 -16.36954 -16.10649 -15.88728 -15.66082 -15.24835 -14.79778 -14.65493 -14.51031 -13.94348 -13.90282 -13.81401 -13.52672 -13.40825 -13.18030 -13.16448 -12.91727 -12.87857 -12.63817 -12.44954 -12.40889 -11.76127 -11.73773 -11.70075 -11.58007 -11.16649 -10.99244 -10.86703 -10.49628 -10.31448 -10.20826 -9.78648 -8.71715 -8.36916 -6.16593 1.14930 1.31006 1.41220 1.42120 1.50561 1.53060 1.55889 1.79108 1.82413 2.20179 2.25539 2.97190 3.03143 3.18459 3.34328 3.54653 3.66934 3.67654 3.73997 3.92185 3.99864 4.03431 4.07935 4.22831 4.24227 4.42376 4.46359 4.48608 4.60443 4.68159 4.74057 4.75523 4.84413 4.99323 5.00077 5.00920 5.23211 5.26705 5.36783 5.38663 5.98539 6.17094 6.50365 6.57372 6.60763 7.03694 7.09517 7.20473 8.72535 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019874 B = 0.001842 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.521908 B =15195.827113 C =16411.464925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.238 4.238 3 C 0.165 3.835 4 O -0.394 6.394 5 C 0.076 3.924 6 H 0.131 0.869 7 C -0.164 4.164 8 C 0.503 3.497 9 O -0.584 6.584 10 N -0.698 5.698 11 C 0.121 3.879 12 C 0.122 3.878 13 H 0.132 0.868 14 C -0.124 4.124 15 C 0.094 3.906 16 N -0.652 5.652 17 C 0.555 3.445 18 O -0.567 6.567 19 C -0.116 4.116 20 S -0.157 6.157 21 C -0.546 4.546 22 H 0.084 0.916 23 C 0.012 3.988 24 N -0.912 5.912 25 Si 1.002 2.998 26 H -0.268 1.268 27 H -0.277 1.277 28 H -0.256 1.256 29 H 0.250 0.750 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.425 0.575 36 H 0.035 0.965 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.143 0.857 40 H 0.085 0.915 41 H 0.118 0.882 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.219 -8.180 34.457 35.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.239 4.239 3 C 0.090 3.910 4 O -0.313 6.313 5 C 0.015 3.985 6 H 0.148 0.852 7 C -0.222 4.222 8 C 0.289 3.711 9 O -0.462 6.462 10 N -0.354 5.354 11 C -0.004 4.004 12 C 0.019 3.981 13 H 0.149 0.851 14 C -0.161 4.161 15 C -0.027 4.027 16 N -0.389 5.389 17 C 0.344 3.656 18 O -0.445 6.445 19 C -0.267 4.267 20 S 0.070 5.930 21 C -0.694 4.694 22 H 0.102 0.898 23 C -0.193 4.193 24 N -0.549 5.549 25 Si 0.823 3.177 26 H -0.193 1.193 27 H -0.202 1.202 28 H -0.179 1.179 29 H 0.266 0.734 30 H 0.127 0.873 31 H 0.110 0.890 32 H 0.068 0.932 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.264 0.736 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.107 0.893 39 H 0.161 0.839 40 H 0.104 0.896 41 H 0.136 0.864 42 H 0.122 0.878 43 H 0.126 0.874 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.091 -7.154 33.288 34.049 hybrid contribution 1.237 -0.357 -1.157 1.731 sum 1.146 -7.511 32.132 33.018 Atomic orbital electron populations 1.25877 0.97031 0.98531 0.97293 1.23262 0.95301 1.02381 1.02906 1.19499 0.84267 0.96813 0.90421 1.88090 1.20733 1.72878 1.49648 1.22126 0.82234 1.03475 0.90668 0.85169 1.22276 1.03439 0.95520 1.00934 1.21296 0.82473 0.75526 0.91758 1.90767 1.52076 1.49882 1.53499 1.45454 1.07075 1.74206 1.08647 1.21296 0.95634 1.00878 0.82608 1.23280 0.92070 1.00866 0.81923 0.85075 1.23601 0.97855 0.93373 1.01306 1.23381 0.92786 0.90771 0.95744 1.49835 1.35269 1.47565 1.06251 1.19719 0.84579 0.77791 0.83500 1.90715 1.28448 1.40506 1.84845 1.23255 1.02606 1.05258 0.95612 1.85675 1.38633 1.65981 1.02677 1.23193 1.12668 1.36777 0.96752 0.89797 1.26192 0.98328 0.94072 1.00683 1.70201 1.30336 1.32552 1.21796 0.84904 0.78001 0.78070 0.76684 1.19302 1.20236 1.17930 0.73410 0.87329 0.89039 0.93207 0.87487 0.88757 0.73619 0.94639 0.93013 0.89294 0.83896 0.89638 0.86384 0.87847 0.87399 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 19.25 74.32 1.43 -1.38 16 2 C -0.24 -4.58 13.73 31.12 0.43 -4.15 16 3 C 0.16 2.33 6.22 70.18 0.44 2.76 16 4 O -0.39 -8.60 9.48 -129.99 -1.23 -9.84 16 5 C 0.08 1.04 3.13 29.85 0.09 1.13 16 6 H 0.13 0.71 7.79 -2.39 -0.02 0.69 16 7 C -0.16 -1.08 9.48 71.98 0.68 -0.39 16 8 C 0.50 11.86 7.18 87.66 0.63 12.49 16 9 O -0.58 -22.47 16.50 15.96 0.26 -22.21 16 10 N -0.70 -11.40 5.51 -463.07 -2.55 -13.95 16 11 C 0.12 3.04 5.40 86.38 0.47 3.50 16 12 C 0.12 2.04 4.09 41.88 0.17 2.21 16 13 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 14 C -0.12 -1.04 8.03 31.02 0.25 -0.79 16 15 C 0.09 1.22 8.41 83.18 0.70 1.92 16 16 N -0.65 -16.77 3.56 -833.15 -2.97 -19.74 16 17 C 0.55 21.95 8.02 87.66 0.70 22.66 16 18 O -0.57 -28.41 15.24 -3.05 -0.05 -28.46 16 19 C -0.12 -4.85 5.99 71.24 0.43 -4.43 16 20 S -0.16 -9.07 20.57 -56.49 -1.16 -10.24 16 21 C -0.55 -31.89 9.50 67.96 0.65 -31.25 16 22 H 0.08 4.52 7.80 -2.91 -0.02 4.50 16 23 C 0.01 0.69 5.49 84.86 0.47 1.15 16 24 N -0.91 -57.40 13.22 21.65 0.29 -57.11 16 25 Si 1.00 44.17 29.55 68.60 2.03 46.20 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 27 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 28 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 29 H 0.25 2.06 7.80 -4.42 -0.03 2.03 16 30 H 0.11 0.73 7.87 -2.39 -0.02 0.71 16 31 H 0.09 0.93 8.08 -2.39 -0.02 0.91 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.11 -0.01 7.92 -2.39 -0.02 -0.03 16 34 H 0.09 0.23 7.87 -2.39 -0.02 0.22 16 35 H 0.42 2.15 8.26 -92.71 -0.77 1.39 16 36 H 0.04 1.29 7.05 -2.39 -0.02 1.28 16 37 H 0.05 1.55 7.90 -2.39 -0.02 1.53 16 38 H 0.09 1.00 7.97 -2.39 -0.02 0.99 16 39 H 0.14 -0.12 8.14 -2.38 -0.02 -0.14 16 40 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.10 3.95 8.14 -2.40 -0.02 3.93 16 43 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 44 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -102.95 400.52 2.38 -100.56 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.24 Total: 9.34 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 7.53 Total: 5.44 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: -5.24 Total: -90.80 kcal Atomic # 8 Polarization: -59.48 SS G_CDS: -1.02 Total: -60.50 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: -9.07 SS G_CDS: -1.16 Total: -10.24 kcal Total: -102.95 2.38 -100.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747666784.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.959 kcal (2) G-P(sol) polarization free energy of solvation -102.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds