Wall clock time and date at job start Sat Apr 11 2020 05:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47524 * 21.94839 * 3 2 1 5 5 C 1.42906 * 114.00164 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47169 * 329.99900 * 5 4 3 7 7 C 1.53003 * 109.47270 * 89.99273 * 5 4 3 8 8 C 1.50694 * 109.47089 * 209.99529 * 5 4 3 9 9 O 1.21278 * 120.00149 * 354.99921 * 8 5 4 10 10 N 1.34776 * 119.99995 * 174.99966 * 8 5 4 11 11 C 1.46497 * 119.99998 * 180.02562 * 10 8 5 12 12 C 1.53004 * 109.46886 * 176.81816 * 11 10 8 13 13 H 1.08999 * 112.96801 * 309.30387 * 12 11 10 14 14 C 1.53954 * 113.76631 * 177.62558 * 12 11 10 15 15 C 1.53940 * 86.28676 * 222.09035 * 14 12 11 16 16 N 1.47581 * 113.76916 * 80.98561 * 12 11 10 17 17 C 1.34775 * 134.49422 * 318.92779 * 16 12 11 18 18 O 1.21280 * 119.99423 * 4.79896 * 17 16 12 19 19 C 1.50690 * 120.00248 * 184.79856 * 17 16 12 20 20 S 1.80998 * 109.47185 * 180.02562 * 19 17 16 21 21 C 1.76199 * 100.00156 * 179.97438 * 20 19 17 22 22 H 1.08008 * 120.00037 * 0.02562 * 21 20 19 23 23 C 1.38800 * 120.00131 * 179.97438 * 21 20 19 24 24 N 1.31625 * 120.00304 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00027 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47285 * 89.99861 * 25 23 21 27 27 H 1.48502 * 109.47237 * 210.00251 * 25 23 21 28 28 H 1.48504 * 109.46982 * 330.00026 * 25 23 21 29 29 H 4.38447 * 5.44494 * 180.02562 * 4 1 2 30 30 H 1.09002 * 109.47590 * 261.93956 * 3 2 1 31 31 H 1.09007 * 109.47067 * 141.94160 * 3 2 1 32 32 H 1.09002 * 109.46512 * 60.00225 * 7 5 4 33 33 H 1.08998 * 109.47307 * 179.97438 * 7 5 4 34 34 H 1.08995 * 109.47016 * 300.00540 * 7 5 4 35 35 H 0.97004 * 119.99902 * 359.97438 * 10 8 5 36 36 H 1.09003 * 109.47213 * 296.81797 * 11 10 8 37 37 H 1.09004 * 109.47324 * 56.81852 * 11 10 8 38 38 H 1.08990 * 113.74359 * 336.44000 * 14 12 11 39 39 H 1.09007 * 113.73807 * 107.74462 * 14 12 11 40 40 H 1.09006 * 113.76750 * 137.91264 * 15 14 12 41 41 H 1.09005 * 113.77119 * 269.19045 * 15 14 12 42 42 H 1.09006 * 109.46970 * 300.00002 * 19 17 16 43 43 H 1.08996 * 109.47453 * 59.99861 * 19 17 16 44 44 H 0.96996 * 120.00771 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1229 -1.2487 -0.5036 5 6 4.5475 -1.3525 -0.5463 6 1 4.9793 -0.3639 -0.7023 7 6 5.0569 -1.9283 0.7766 8 6 4.9513 -2.2614 -1.6784 9 8 4.1030 -2.8417 -2.3222 10 7 6.2551 -2.4295 -1.9754 11 6 6.6476 -3.3127 -3.0764 12 6 8.1667 -3.2645 -3.2521 13 1 8.5550 -2.2482 -3.3200 14 6 8.6944 -4.2051 -4.3507 15 6 9.8292 -4.5511 -3.3697 16 7 8.9029 -4.1202 -2.3015 17 6 8.7790 -4.3970 -0.9883 18 8 7.8434 -3.9491 -0.3599 19 6 9.8028 -5.2630 -0.3009 20 16 9.3617 -5.4488 1.4447 21 6 10.6867 -6.4756 1.9876 22 1 11.4486 -6.7886 1.2889 23 6 10.7520 -6.8814 3.3133 24 7 9.8238 -6.4996 4.1650 25 14 12.1571 -7.9693 3.8890 26 1 13.2832 -7.1196 4.3527 27 1 11.6919 -8.8283 5.0075 28 1 12.6133 -8.8251 2.7643 29 1 -1.0499 -0.0003 -0.0003 30 1 3.0093 0.1449 1.0175 31 1 3.0089 0.8100 -0.6336 32 1 4.6251 -2.9169 0.9327 33 1 6.1435 -2.0079 0.7439 34 1 4.7648 -1.2709 1.5954 35 1 6.9336 -1.9651 -1.4607 36 1 6.3402 -4.3338 -2.8504 37 1 6.1648 -2.9831 -3.9964 38 1 8.0311 -5.0423 -4.5675 39 1 9.0326 -3.6860 -5.2476 40 1 10.0744 -5.6128 -3.3384 41 1 10.7081 -3.9145 -3.4724 42 1 9.8267 -6.2440 -0.7756 43 1 10.7850 -4.7971 -0.3801 44 1 9.8692 -6.7834 5.0913 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001747666785.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:14 Heat of formation + Delta-G solvation = -47.927347 kcal Electronic energy + Delta-G solvation = -26744.737813 eV Core-core repulsion = 22790.783951 eV Total energy + Delta-G solvation = -3953.953862 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.53399 -40.77399 -38.93020 -38.58886 -35.69809 -34.59906 -34.45782 -32.59811 -31.93245 -29.44565 -29.23840 -28.10564 -27.64693 -25.46068 -23.80550 -22.97790 -21.50341 -20.23803 -19.73332 -19.34524 -18.50620 -18.06310 -17.81552 -17.00685 -16.97657 -16.88371 -16.64298 -16.39449 -16.07412 -15.83319 -15.63064 -15.14669 -14.66708 -14.63388 -14.45952 -13.98313 -13.77356 -13.61885 -13.30427 -13.28583 -13.20571 -13.12186 -13.02482 -12.89974 -12.61732 -12.51475 -12.31068 -11.98258 -11.73930 -11.73395 -11.59336 -11.15486 -10.93785 -10.68111 -10.48350 -10.27850 -10.09860 -9.66758 -8.65953 -8.36100 -6.13072 1.22608 1.32242 1.40546 1.43192 1.52879 1.54482 1.67427 1.79513 1.97017 2.17648 2.26887 2.98002 3.01110 3.23711 3.44530 3.57379 3.70284 3.71553 3.77670 3.88361 3.97615 4.05879 4.21827 4.22950 4.28466 4.41130 4.43761 4.48460 4.50846 4.65014 4.71146 4.73596 4.78939 4.99075 5.02428 5.07963 5.20997 5.34680 5.39959 5.41339 5.95654 6.17955 6.48976 6.57375 6.66301 7.05455 7.16463 7.23662 8.72772 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010413 B = 0.002776 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.187932 B =10082.426054 C =12510.722513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.240 4.240 3 C 0.161 3.839 4 O -0.387 6.387 5 C 0.080 3.920 6 H 0.130 0.870 7 C -0.161 4.161 8 C 0.511 3.489 9 O -0.580 6.580 10 N -0.699 5.699 11 C 0.122 3.878 12 C 0.123 3.877 13 H 0.129 0.871 14 C -0.122 4.122 15 C 0.097 3.903 16 N -0.650 5.650 17 C 0.550 3.450 18 O -0.545 6.545 19 C -0.121 4.121 20 S -0.141 6.141 21 C -0.548 4.548 22 H 0.079 0.921 23 C 0.014 3.986 24 N -0.910 5.910 25 Si 0.996 3.004 26 H -0.266 1.266 27 H -0.278 1.278 28 H -0.260 1.260 29 H 0.254 0.746 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.036 0.964 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.410 0.590 36 H 0.037 0.963 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.129 0.871 40 H 0.085 0.915 41 H 0.113 0.887 42 H 0.093 0.907 43 H 0.102 0.898 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.085 14.317 -18.191 23.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.240 4.240 3 C 0.087 3.913 4 O -0.306 6.306 5 C 0.020 3.980 6 H 0.147 0.853 7 C -0.219 4.219 8 C 0.297 3.703 9 O -0.460 6.460 10 N -0.351 5.351 11 C -0.003 4.003 12 C 0.020 3.980 13 H 0.146 0.854 14 C -0.160 4.160 15 C -0.024 4.024 16 N -0.389 5.389 17 C 0.338 3.662 18 O -0.422 6.422 19 C -0.272 4.272 20 S 0.086 5.914 21 C -0.695 4.695 22 H 0.097 0.903 23 C -0.191 4.191 24 N -0.546 5.546 25 Si 0.818 3.182 26 H -0.191 1.191 27 H -0.204 1.204 28 H -0.184 1.184 29 H 0.270 0.730 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.247 0.753 36 H 0.055 0.945 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.147 0.853 40 H 0.104 0.896 41 H 0.131 0.869 42 H 0.111 0.889 43 H 0.120 0.880 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.250 14.359 -17.409 23.169 hybrid contribution 1.809 -1.169 0.616 2.241 sum -3.440 13.189 -16.793 21.628 Atomic orbital electron populations 1.25873 0.96883 0.96266 0.99008 1.23132 0.95049 1.03511 1.02272 1.19485 0.84749 0.86223 1.00876 1.88073 1.20071 1.36709 1.85738 1.21948 0.82256 1.00328 0.93507 0.85278 1.22145 1.02225 1.01384 0.96167 1.20788 0.82745 0.82374 0.84368 1.90664 1.51702 1.50116 1.53485 1.45687 1.06544 1.47630 1.35200 1.21559 0.94965 0.93538 0.90198 1.23416 0.89991 0.98003 0.86552 0.85390 1.23500 0.96532 0.99028 0.96922 1.23539 0.94775 1.02415 0.81655 1.50411 1.34786 1.47614 1.06044 1.19639 0.85321 0.80522 0.80699 1.90663 1.33226 1.53876 1.64481 1.23283 1.01634 1.02379 0.99937 1.85455 1.37647 1.66636 1.01685 1.23192 1.11869 1.36133 0.98349 0.90275 1.26094 0.99688 0.97635 0.95647 1.70167 1.35015 1.44757 1.04696 0.84989 0.77374 0.77783 0.78068 1.19113 1.20374 1.18371 0.72960 0.88703 0.88301 0.94503 0.90338 0.89087 0.75307 0.94460 0.88707 0.88993 0.85261 0.89629 0.86886 0.88878 0.88013 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 19.25 74.32 1.43 -1.71 16 2 C -0.24 -5.59 13.73 31.12 0.43 -5.17 16 3 C 0.16 3.32 6.22 70.18 0.44 3.76 16 4 O -0.39 -11.35 9.48 -129.99 -1.23 -12.58 16 5 C 0.08 2.03 3.13 29.85 0.09 2.12 16 6 H 0.13 2.05 7.79 -2.39 -0.02 2.03 16 7 C -0.16 -4.41 9.48 71.98 0.68 -3.73 16 8 C 0.51 15.96 7.18 87.66 0.63 16.59 16 9 O -0.58 -23.38 16.51 15.97 0.26 -23.11 16 10 N -0.70 -17.94 4.35 -463.06 -2.01 -19.96 16 11 C 0.12 2.76 5.21 86.38 0.45 3.21 16 12 C 0.12 1.91 4.28 45.10 0.19 2.10 16 13 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 14 C -0.12 -1.10 7.86 31.25 0.25 -0.85 16 15 C 0.10 1.24 8.63 86.43 0.75 1.98 16 16 N -0.65 -14.82 3.50 -810.64 -2.84 -17.66 16 17 C 0.55 19.10 7.99 87.65 0.70 19.81 16 18 O -0.55 -22.50 14.20 -3.03 -0.04 -22.54 16 19 C -0.12 -4.74 5.92 71.23 0.42 -4.32 16 20 S -0.14 -7.71 20.57 -56.49 -1.16 -8.87 16 21 C -0.55 -31.10 9.50 67.95 0.65 -30.46 16 22 H 0.08 4.20 7.80 -2.91 -0.02 4.18 16 23 C 0.01 0.81 5.49 84.86 0.47 1.27 16 24 N -0.91 -55.59 13.22 21.65 0.29 -55.30 16 25 Si 1.00 43.41 29.55 68.60 2.03 45.44 16 26 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 27 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 28 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 29 H 0.25 2.55 7.80 -4.42 -0.03 2.52 16 30 H 0.10 1.54 7.87 -2.39 -0.02 1.52 16 31 H 0.10 1.45 8.08 -2.38 -0.02 1.44 16 32 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 2.26 7.92 -2.39 -0.02 2.24 16 34 H 0.09 1.98 7.87 -2.39 -0.02 1.96 16 35 H 0.41 9.52 7.53 -92.71 -0.70 8.82 16 36 H 0.04 1.12 8.14 -2.39 -0.02 1.11 16 37 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 38 H 0.09 0.99 8.10 -2.39 -0.02 0.97 16 39 H 0.13 0.26 8.14 -2.38 -0.02 0.24 16 40 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 43 H 0.10 3.63 8.14 -2.40 -0.02 3.61 16 44 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -89.58 398.95 3.16 -86.42 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.31 Total: 23.56 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 7.57 Total: 4.61 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -4.57 Total: -92.92 kcal Atomic # 8 Polarization: -57.22 SS G_CDS: -1.01 Total: -58.24 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -7.71 SS G_CDS: -1.16 Total: -8.87 kcal Total: -89.58 3.16 -86.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747666785.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.491 kcal (2) G-P(sol) polarization free energy of solvation -89.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds