Wall clock time and date at job start Sat Apr 11 2020 05:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 O 1.42903 * 109.47164 * 273.66092 * 3 2 1 5 5 C 1.42900 * 113.99891 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47031 * 29.99565 * 5 4 3 7 7 C 1.53002 * 109.46728 * 270.00124 * 5 4 3 8 8 C 1.50697 * 109.47131 * 150.00164 * 5 4 3 9 9 O 1.21281 * 120.00009 * 4.99557 * 8 5 4 10 10 N 1.34769 * 120.00236 * 184.99657 * 8 5 4 11 11 C 1.46500 * 120.00289 * 179.97438 * 10 8 5 12 12 C 1.53001 * 109.46991 * 174.92206 * 11 10 8 13 13 H 1.08999 * 112.96520 * 50.84229 * 12 11 10 14 14 C 1.53946 * 113.76920 * 182.52435 * 12 11 10 15 15 C 1.53939 * 86.29251 * 137.90767 * 14 12 11 16 16 N 1.47577 * 86.11708 * 336.39352 * 15 14 12 17 17 C 1.34778 * 134.49329 * 204.64227 * 16 15 14 18 18 O 1.21283 * 119.99851 * 185.04282 * 17 16 15 19 19 C 1.50702 * 120.00191 * 5.04409 * 17 16 15 20 20 S 1.80993 * 109.47309 * 180.02562 * 19 17 16 21 21 C 1.76199 * 100.00109 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99786 * 0.02562 * 21 20 19 23 23 C 1.38801 * 120.00240 * 180.02562 * 21 20 19 24 24 N 1.31628 * 120.00162 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 119.99797 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.46922 * 90.00290 * 25 23 21 27 27 H 1.48498 * 109.46863 * 209.99987 * 25 23 21 28 28 H 1.48500 * 109.47060 * 330.00105 * 25 23 21 29 29 H 4.38453 * 5.44414 * 180.02562 * 4 1 2 30 30 H 1.09003 * 109.46744 * 153.66045 * 3 2 1 31 31 H 1.08998 * 109.47107 * 33.66494 * 3 2 1 32 32 H 1.09007 * 109.47006 * 299.99998 * 7 5 4 33 33 H 1.08999 * 109.47538 * 60.00234 * 7 5 4 34 34 H 1.08998 * 109.46917 * 180.02562 * 7 5 4 35 35 H 0.97012 * 119.99922 * 0.02562 * 10 8 5 36 36 H 1.09000 * 109.47276 * 294.91981 * 11 10 8 37 37 H 1.08996 * 109.46644 * 54.92460 * 11 10 8 38 38 H 1.09006 * 113.73930 * 252.25754 * 14 12 11 39 39 H 1.09003 * 113.74339 * 23.55853 * 14 12 11 40 40 H 1.09000 * 113.76831 * 90.69500 * 15 14 12 41 41 H 1.09000 * 113.77314 * 222.09083 * 15 14 12 42 42 H 1.09006 * 109.47055 * 300.00374 * 19 17 16 43 43 H 1.08998 * 109.47099 * 59.99688 * 19 17 16 44 44 H 0.97003 * 120.00170 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1224 -0.0852 1.3446 5 6 4.5469 -0.0911 1.4572 6 1 4.9789 0.4769 0.6333 7 6 5.0565 -1.5329 1.4050 8 6 4.9500 0.5371 2.7663 9 8 4.1012 0.8668 3.5674 10 7 6.2536 0.7326 3.0469 11 6 6.6454 1.3438 4.3193 12 6 8.1705 1.3354 4.4408 13 1 8.6693 1.7486 3.5641 14 6 8.6898 1.9020 5.7747 15 6 9.6903 0.7321 5.7673 16 7 8.7245 0.0432 4.8895 17 6 8.4560 -1.2476 4.6100 18 8 7.6412 -1.5263 3.7559 19 6 9.1682 -2.3446 5.3586 20 16 8.5958 -3.9538 4.7596 21 6 9.5635 -5.0202 5.7751 22 1 10.2507 -4.6023 6.4960 23 6 9.4426 -6.3971 5.6487 24 7 10.1651 -7.1937 6.4076 25 14 8.2535 -7.1197 4.4024 26 1 8.9515 -7.3114 3.1058 27 1 7.7556 -8.4292 4.8949 28 1 7.1083 -6.1930 4.2158 29 1 -1.0500 -0.0002 0.0000 30 1 3.0089 0.9218 -0.4560 31 1 3.0097 -0.8545 -0.5697 32 1 4.6244 -2.1010 2.2289 33 1 4.7650 -1.9873 0.4581 34 1 6.1430 -1.5375 1.4913 35 1 6.9325 0.4692 2.4059 36 1 6.2837 2.3714 4.3554 37 1 6.2121 0.7769 5.1433 38 1 9.1591 2.8816 5.6824 39 1 7.9627 1.8526 6.5853 40 1 10.6369 0.9667 5.2803 41 1 9.8172 0.2564 6.7397 42 1 10.2425 -2.2577 5.1954 43 1 8.9543 -2.2559 6.4237 44 1 10.0803 -8.1560 6.3195 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001747666786.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:17 Heat of formation + Delta-G solvation = -47.816620 kcal Electronic energy + Delta-G solvation = -26927.954352 eV Core-core repulsion = 22974.005291 eV Total energy + Delta-G solvation = -3953.949061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.55626 -40.78269 -38.94282 -38.61927 -35.70670 -34.69724 -34.45890 -32.59892 -31.97680 -29.49981 -29.25231 -28.10610 -27.85992 -25.45963 -23.80899 -23.01023 -21.52242 -20.28435 -19.74822 -19.37524 -18.52222 -18.07409 -17.82167 -17.20578 -17.04336 -16.91053 -16.64925 -16.39296 -16.03929 -15.83164 -15.62798 -15.19039 -14.94200 -14.64918 -14.54362 -13.98419 -13.81412 -13.67613 -13.43167 -13.35314 -13.24017 -13.18187 -13.03663 -12.98763 -12.62418 -12.50646 -12.31165 -12.00889 -11.89163 -11.74098 -11.59580 -11.19199 -10.93543 -10.72905 -10.55463 -10.48309 -10.09900 -9.68596 -9.00012 -8.54009 -6.23993 0.95424 1.28273 1.31798 1.42982 1.50023 1.55120 1.62250 1.78940 1.94682 2.16792 2.22415 2.66614 2.84281 3.01595 3.39978 3.56209 3.62334 3.70979 3.76606 3.89057 3.98815 4.05485 4.19800 4.21445 4.22641 4.39647 4.43155 4.43708 4.49281 4.66598 4.71742 4.73384 4.79036 4.98588 5.02783 5.05315 5.22598 5.34148 5.41478 5.68103 5.96350 6.08559 6.50274 6.56896 6.62938 6.91160 7.14569 7.21251 8.58624 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008848 B = 0.003318 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3163.738399 B = 8435.630605 C =11262.335139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.239 4.239 3 C 0.162 3.838 4 O -0.388 6.388 5 C 0.079 3.921 6 H 0.131 0.869 7 C -0.160 4.160 8 C 0.511 3.489 9 O -0.581 6.581 10 N -0.698 5.698 11 C 0.120 3.880 12 C 0.125 3.875 13 H 0.130 0.870 14 C -0.122 4.122 15 C 0.095 3.905 16 N -0.649 5.649 17 C 0.551 3.449 18 O -0.541 6.541 19 C -0.103 4.103 20 S -0.167 6.167 21 C -0.530 4.530 22 H 0.059 0.941 23 C 0.045 3.955 24 N -0.917 5.917 25 Si 0.915 3.085 26 H -0.258 1.258 27 H -0.261 1.261 28 H -0.239 1.239 29 H 0.253 0.747 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.034 0.966 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.412 0.588 36 H 0.096 0.904 37 H 0.039 0.961 38 H 0.129 0.871 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.084 0.916 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.164 24.327 -11.783 27.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.239 4.239 3 C 0.087 3.913 4 O -0.307 6.307 5 C 0.019 3.981 6 H 0.148 0.852 7 C -0.218 4.218 8 C 0.298 3.702 9 O -0.461 6.461 10 N -0.351 5.351 11 C -0.004 4.004 12 C 0.023 3.977 13 H 0.147 0.853 14 C -0.160 4.160 15 C -0.026 4.026 16 N -0.387 5.387 17 C 0.339 3.661 18 O -0.419 6.419 19 C -0.254 4.254 20 S 0.060 5.940 21 C -0.678 4.678 22 H 0.077 0.923 23 C -0.160 4.160 24 N -0.555 5.555 25 Si 0.737 3.263 26 H -0.183 1.183 27 H -0.185 1.185 28 H -0.163 1.163 29 H 0.270 0.730 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.053 0.947 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.249 0.751 36 H 0.114 0.886 37 H 0.057 0.943 38 H 0.147 0.853 39 H 0.110 0.890 40 H 0.131 0.869 41 H 0.102 0.898 42 H 0.123 0.877 43 H 0.115 0.885 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.046 23.753 -12.282 27.653 hybrid contribution 1.006 -1.095 0.753 1.667 sum -6.039 22.659 -11.528 26.131 Atomic orbital electron populations 1.25878 0.96911 0.99515 0.95854 1.23159 0.95095 1.02036 1.03661 1.19486 0.84668 1.03490 0.83622 1.88080 1.20226 1.95017 1.27416 1.21970 0.82205 0.97875 0.96068 0.85205 1.22142 1.02420 0.94163 1.03074 1.20797 0.82789 0.77758 0.88902 1.90674 1.51759 1.52639 1.51045 1.45652 1.06552 1.62228 1.20645 1.21590 0.94640 0.98737 0.85457 1.23416 0.92078 0.80941 1.01275 0.85261 1.23512 0.98039 0.99681 0.94810 1.23517 0.94268 0.89993 0.94813 1.50327 1.38886 1.02674 1.46781 1.19515 0.82043 0.82412 0.82163 1.90643 1.35431 1.82436 1.33359 1.23169 1.03970 0.94883 1.03384 1.84587 1.57410 0.98600 1.53412 1.22474 1.26971 0.94089 1.24236 0.92295 1.25574 0.96796 0.96429 0.97234 1.70016 1.40784 1.04830 1.39910 0.85857 0.80934 0.79743 0.79770 1.18259 1.18541 1.16291 0.73030 0.88300 0.88622 0.94691 0.89153 0.89930 0.75113 0.88580 0.94258 0.85280 0.88970 0.86864 0.89772 0.87711 0.88547 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 19.25 74.32 1.43 -1.64 16 2 C -0.24 -5.39 13.73 31.13 0.43 -4.96 16 3 C 0.16 3.14 6.22 70.18 0.44 3.57 16 4 O -0.39 -10.91 9.48 -129.99 -1.23 -12.14 16 5 C 0.08 1.86 3.13 29.85 0.09 1.95 16 6 H 0.13 1.79 7.79 -2.39 -0.02 1.77 16 7 C -0.16 -3.98 9.48 71.98 0.68 -3.30 16 8 C 0.51 15.08 7.18 87.66 0.63 15.70 16 9 O -0.58 -22.83 16.50 15.96 0.26 -22.57 16 10 N -0.70 -16.17 4.25 -463.08 -1.97 -18.13 16 11 C 0.12 2.46 5.33 86.38 0.46 2.92 16 12 C 0.13 1.73 4.27 45.09 0.19 1.92 16 13 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 14 C -0.12 -0.97 7.86 31.25 0.25 -0.73 16 15 C 0.10 1.15 8.61 86.48 0.74 1.90 16 16 N -0.65 -13.78 3.49 -814.03 -2.84 -16.62 16 17 C 0.55 17.89 7.94 87.66 0.70 18.59 16 18 O -0.54 -20.35 14.48 -3.04 -0.04 -20.40 16 19 C -0.10 -3.90 5.91 71.24 0.42 -3.47 16 20 S -0.17 -8.35 18.55 -56.49 -1.05 -9.39 16 21 C -0.53 -31.00 10.04 67.95 0.68 -30.31 16 22 H 0.06 3.65 8.03 -2.91 -0.02 3.63 16 23 C 0.05 2.66 5.50 84.86 0.47 3.12 16 24 N -0.92 -56.15 13.97 21.65 0.30 -55.85 16 25 Si 0.92 45.19 27.74 68.60 1.90 47.09 16 26 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 27 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 28 H -0.24 -11.86 6.74 99.48 0.67 -11.19 16 29 H 0.25 2.43 7.80 -4.42 -0.03 2.40 16 30 H 0.10 1.33 8.08 -2.39 -0.02 1.31 16 31 H 0.10 1.41 7.87 -2.39 -0.02 1.39 16 32 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.09 1.74 7.87 -2.39 -0.02 1.72 16 34 H 0.08 2.08 7.90 -2.39 -0.02 2.06 16 35 H 0.41 8.08 7.76 -92.70 -0.72 7.36 16 36 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.04 1.11 8.13 -2.39 -0.02 1.09 16 38 H 0.13 0.14 8.14 -2.38 -0.02 0.12 16 39 H 0.09 0.90 8.10 -2.39 -0.02 0.88 16 40 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 43 H 0.10 3.56 8.14 -2.40 -0.02 3.54 16 44 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -88.62 396.66 3.19 -85.43 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.25 Total: 17.33 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 7.61 Total: 5.26 kcal Atomic # 7 Polarization: -86.10 SS G_CDS: -4.51 Total: -90.61 kcal Atomic # 8 Polarization: -54.10 SS G_CDS: -1.01 Total: -55.11 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.09 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.05 Total: -9.39 kcal Total: -88.62 3.19 -85.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747666786.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.609 kcal (2) G-P(sol) polarization free energy of solvation -88.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds