Wall clock time and date at job start Sat Apr 11 2020 05:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42889 * 109.47369 * 81.93267 * 3 2 1 5 5 C 1.42906 * 114.00461 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.46621 * 330.00232 * 5 4 3 7 7 C 1.52997 * 109.47028 * 89.99428 * 5 4 3 8 8 C 1.50692 * 109.47260 * 209.99729 * 5 4 3 9 9 O 1.21284 * 120.00368 * 359.97438 * 8 5 4 10 10 N 1.34779 * 119.99595 * 179.97438 * 8 5 4 11 11 C 1.46502 * 119.99838 * 184.69751 * 10 8 5 12 12 C 1.52996 * 115.56290 * 270.62054 * 11 10 8 13 13 N 1.46501 * 109.47204 * 324.97416 * 12 11 10 14 14 C 1.34775 * 120.00081 * 174.85141 * 13 12 11 15 15 O 1.21283 * 119.99986 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99730 * 180.02562 * 14 13 12 17 17 S 1.81003 * 109.46921 * 179.97438 * 16 14 13 18 18 C 1.76201 * 100.00066 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99721 * 0.02562 * 18 17 16 20 20 C 1.38794 * 120.00153 * 180.02562 * 18 17 16 21 21 N 1.31632 * 120.00033 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99897 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47415 * 90.00000 * 22 20 18 24 24 H 1.48505 * 109.47054 * 209.99855 * 22 20 18 25 25 H 1.48494 * 109.47635 * 329.99551 * 22 20 18 26 26 C 1.53010 * 117.49816 * 56.30684 * 11 10 8 27 27 C 1.53003 * 60.03035 * 107.47623 * 26 11 10 28 28 H 4.38441 * 5.44440 * 180.02562 * 4 1 2 29 29 H 1.08999 * 109.47048 * 321.92812 * 3 2 1 30 30 H 1.09010 * 109.47009 * 201.93424 * 3 2 1 31 31 H 1.09007 * 109.47719 * 300.00643 * 7 5 4 32 32 H 1.09005 * 109.46983 * 60.00553 * 7 5 4 33 33 H 1.08997 * 109.47489 * 180.02562 * 7 5 4 34 34 H 0.96998 * 120.00662 * 4.69931 * 10 8 5 35 35 H 1.09001 * 109.47326 * 84.98116 * 12 11 10 36 36 H 1.09005 * 109.46586 * 204.97902 * 12 11 10 37 37 H 0.97005 * 119.99492 * 354.85213 * 13 12 11 38 38 H 1.08994 * 109.47321 * 299.99736 * 16 14 13 39 39 H 1.09007 * 109.47163 * 60.00038 * 16 14 13 40 40 H 0.96998 * 119.99926 * 180.02562 * 21 20 18 41 41 H 1.08994 * 117.50026 * 214.98024 * 26 11 10 42 42 H 1.09003 * 117.49312 * 359.97438 * 26 11 10 43 43 H 1.09002 * 117.49776 * 107.50520 * 27 26 11 44 44 H 1.08998 * 117.49884 * 252.51652 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1224 -0.1882 -1.3338 5 6 4.5470 -0.2028 -1.4457 6 1 4.9790 0.4269 -0.6679 7 6 5.0567 -1.6362 -1.2828 8 6 4.9501 0.3229 -2.7992 9 8 4.1010 0.6750 -3.5905 10 7 6.2542 0.4018 -3.1304 11 6 6.6511 1.0077 -4.4038 12 6 6.7347 0.0492 -5.5934 13 7 7.2124 -1.2577 -5.1348 14 6 7.2667 -2.2947 -5.9939 15 8 6.9196 -2.1462 -7.1465 16 6 7.7575 -3.6391 -5.5220 17 16 7.7118 -4.8149 -6.8974 18 6 8.3197 -6.2569 -6.0876 19 1 8.5866 -6.2169 -5.0418 20 6 8.4557 -7.4440 -6.7937 21 7 8.1300 -7.4928 -8.0681 22 14 9.0996 -8.9729 -5.9350 23 1 7.9615 -9.7343 -5.3604 24 1 9.8204 -9.8245 -6.9150 25 1 10.0287 -8.5754 -4.8470 26 6 6.1853 2.4386 -4.6810 27 6 7.6544 2.1628 -4.3545 28 1 -1.0499 0.0002 -0.0001 29 1 3.0097 -0.8082 0.6337 30 1 3.0089 0.9542 0.3839 31 1 4.7651 -2.0166 -0.3037 32 1 4.6247 -2.2660 -2.0606 33 1 6.1433 -1.6474 -1.3677 34 1 6.9299 0.0574 -2.5257 35 1 5.7470 -0.0615 -6.0410 36 1 7.4267 0.4494 -6.3344 37 1 7.4896 -1.3765 -4.2128 38 1 8.7805 -3.5451 -5.1578 39 1 7.1166 -3.9977 -4.7165 40 1 8.2247 -8.3226 -8.5614 41 1 5.9384 2.6970 -5.7107 42 1 5.5831 2.9288 -3.9160 43 1 8.3741 2.2398 -5.1695 44 1 8.0187 2.4714 -3.3746 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759876811.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:32 Heat of formation + Delta-G solvation = -58.753171 kcal Electronic energy + Delta-G solvation = -26480.764469 eV Core-core repulsion = 22526.341163 eV Total energy + Delta-G solvation = -3954.423305 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.49902 -40.52843 -39.32055 -38.10231 -35.27711 -34.71810 -34.57545 -34.05783 -31.81254 -31.29133 -28.09734 -27.88706 -27.31517 -25.51418 -23.57850 -22.25643 -21.79265 -20.74613 -19.88839 -19.66858 -18.54288 -17.96116 -17.84053 -17.68137 -16.87516 -16.72837 -16.69315 -16.35261 -16.05453 -15.94282 -15.61902 -15.20847 -14.79209 -14.63428 -14.59068 -14.35872 -13.99976 -13.56871 -13.53239 -13.39924 -13.20043 -13.15962 -12.88480 -12.60662 -12.47294 -12.42098 -11.95613 -11.73409 -11.71470 -11.58991 -11.31760 -11.13720 -10.96032 -10.88321 -10.47483 -10.28877 -10.26483 -10.12648 -8.66924 -8.33778 -6.12340 1.24901 1.29875 1.43498 1.47339 1.52895 1.57245 1.58753 1.78881 1.90241 2.24055 2.28423 2.69144 2.99290 3.00504 3.32269 3.41886 3.59462 3.67312 3.83239 3.86109 3.89999 3.99894 4.08653 4.22781 4.28777 4.45258 4.47496 4.48749 4.59215 4.67745 4.69166 4.75616 4.78428 4.98907 4.99122 5.18920 5.22286 5.27706 5.42524 5.50034 5.98304 6.20600 6.45681 6.48590 6.57099 7.07301 7.19558 7.22443 8.75522 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010138 B = 0.002552 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.262353 B =10968.583923 C =12913.307396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.238 4.238 3 C 0.165 3.835 4 O -0.391 6.391 5 C 0.074 3.926 6 H 0.135 0.865 7 C -0.174 4.174 8 C 0.512 3.488 9 O -0.561 6.561 10 N -0.681 5.681 11 C 0.067 3.933 12 C 0.155 3.845 13 N -0.703 5.703 14 C 0.531 3.469 15 O -0.568 6.568 16 C -0.126 4.126 17 S -0.157 6.157 18 C -0.543 4.543 19 H 0.086 0.914 20 C 0.011 3.989 21 N -0.913 5.913 22 Si 1.000 3.000 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.255 1.255 26 C -0.160 4.160 27 C -0.129 4.129 28 H 0.249 0.751 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.041 0.959 33 H 0.104 0.896 34 H 0.422 0.578 35 H 0.039 0.961 36 H 0.083 0.917 37 H 0.414 0.586 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.271 0.729 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.120 0.880 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.941 21.161 24.083 32.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.238 4.238 3 C 0.091 3.909 4 O -0.311 6.311 5 C 0.014 3.986 6 H 0.153 0.847 7 C -0.231 4.231 8 C 0.298 3.702 9 O -0.438 6.438 10 N -0.337 5.337 11 C -0.021 4.021 12 C 0.030 3.970 13 N -0.357 5.357 14 C 0.317 3.683 15 O -0.447 6.447 16 C -0.277 4.277 17 S 0.070 5.930 18 C -0.691 4.691 19 H 0.104 0.896 20 C -0.194 4.194 21 N -0.549 5.549 22 Si 0.822 3.178 23 H -0.195 1.195 24 H -0.204 1.204 25 H -0.178 1.178 26 C -0.198 4.198 27 C -0.166 4.166 28 H 0.266 0.734 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.061 0.939 33 H 0.122 0.878 34 H 0.262 0.738 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.251 0.749 38 H 0.135 0.865 39 H 0.127 0.873 40 H 0.079 0.921 41 H 0.119 0.881 42 H 0.113 0.887 43 H 0.138 0.862 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.263 21.574 21.337 30.518 hybrid contribution 0.490 -1.420 1.758 2.312 sum -2.772 20.154 23.095 30.778 Atomic orbital electron populations 1.25875 0.97029 0.99677 0.96132 1.23250 0.95280 1.01862 1.03433 1.19478 0.84274 1.03225 0.83952 1.88095 1.20616 1.93930 1.28449 1.22105 0.82271 0.99497 0.94728 0.84740 1.22336 1.03309 0.93509 1.03949 1.21069 0.82589 0.77227 0.89289 1.90749 1.51501 1.48775 1.52741 1.45023 1.06857 1.62180 1.19624 1.20659 1.08172 0.88291 0.84984 1.21018 0.98935 0.81870 0.95199 1.45477 1.67028 1.09121 1.14074 1.20169 0.76994 0.85772 0.85354 1.90703 1.49103 1.84471 1.20373 1.23337 1.05825 0.94812 1.03697 1.85691 1.86363 1.05310 1.15598 1.23196 1.50186 0.96289 0.99401 0.89621 1.26170 0.95134 1.02495 0.95594 1.70197 1.46578 1.28555 1.09614 0.84926 0.78489 0.76359 0.78030 1.19467 1.20446 1.17826 1.23193 0.98538 0.94467 1.03590 1.23641 0.91883 0.95401 1.05710 0.73428 0.88131 0.88449 0.89034 0.93938 0.87774 0.73849 0.94230 0.89930 0.74891 0.86539 0.87346 0.92056 0.88109 0.88659 0.86217 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 19.25 74.32 1.43 -1.40 16 2 C -0.24 -4.60 13.73 31.13 0.43 -4.17 16 3 C 0.17 2.35 6.22 70.18 0.44 2.79 16 4 O -0.39 -8.48 9.48 -129.94 -1.23 -9.71 16 5 C 0.07 1.02 3.15 29.84 0.09 1.12 16 6 H 0.14 0.60 7.79 -2.39 -0.02 0.58 16 7 C -0.17 -1.87 9.42 71.98 0.68 -1.19 16 8 C 0.51 10.42 7.08 87.65 0.62 11.04 16 9 O -0.56 -18.28 15.89 15.99 0.25 -18.02 16 10 N -0.68 -8.87 4.41 -422.80 -1.86 -10.74 16 11 C 0.07 1.10 2.15 3.63 0.01 1.10 16 12 C 0.16 3.81 5.90 86.38 0.51 4.32 16 13 N -0.70 -17.86 5.40 -463.06 -2.50 -20.36 16 14 C 0.53 19.98 7.85 87.66 0.69 20.67 16 15 O -0.57 -27.45 15.86 -3.04 -0.05 -27.50 16 16 C -0.13 -4.91 6.16 71.24 0.44 -4.47 16 17 S -0.16 -8.77 20.57 -56.49 -1.16 -9.93 16 18 C -0.54 -30.78 9.50 67.95 0.65 -30.13 16 19 H 0.09 4.44 7.80 -2.91 -0.02 4.42 16 20 C 0.01 0.60 5.49 84.86 0.47 1.07 16 21 N -0.91 -56.45 13.22 21.65 0.29 -56.17 16 22 Si 1.00 43.28 29.55 68.60 2.03 45.31 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 26 C -0.16 -2.54 9.24 30.60 0.28 -2.26 16 27 C -0.13 -1.21 10.11 30.62 0.31 -0.90 16 28 H 0.25 2.11 7.80 -4.42 -0.03 2.08 16 29 H 0.10 0.86 7.87 -2.39 -0.02 0.84 16 30 H 0.10 0.85 8.09 -2.38 -0.02 0.83 16 31 H 0.09 0.66 7.87 -2.38 -0.02 0.65 16 32 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.10 0.45 7.47 -2.39 -0.02 0.43 16 34 H 0.42 1.94 7.97 -92.71 -0.74 1.20 16 35 H 0.04 1.30 8.13 -2.39 -0.02 1.28 16 36 H 0.08 1.94 7.91 -2.38 -0.02 1.92 16 37 H 0.41 7.07 7.65 -92.70 -0.71 6.36 16 38 H 0.12 3.93 8.14 -2.40 -0.02 3.91 16 39 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 40 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 41 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.12 0.96 8.06 -2.39 -0.02 0.94 16 44 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -94.39 402.51 2.37 -92.02 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -0.42 Total: 17.51 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 7.03 Total: -2.41 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -4.08 Total: -87.26 kcal Atomic # 8 Polarization: -54.21 SS G_CDS: -1.03 Total: -55.24 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.93 kcal Total: -94.39 2.37 -92.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759876811.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.264 kcal (2) G-P(sol) polarization free energy of solvation -94.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds